BAC Information

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BAC

Clone NameB6Ng01-006J02
Chromosome1 (Build37)7 (Build37)
Map Location 34,724,404 - 34,724,759127,977,585 - 127,978,158
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePrim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741
Downstream geneArhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006J02.bB6Ng01-006J02.g
ACCDH843388DH843389
length434568
definitionDH843388|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J02, 5' end.DH843389|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(34,724,404 - 34,724,759)(127,977,585 - 127,978,158)
sequence
gaattcattccttcttgggaatagagggaatgaggtgtgagtaagtttgt
gagtgtgtgtgtgtgtgggtgcgggtgtacgatggctgtatagagatccc
agcacagctggggggaggtcatctgctttaccactagatctcacccgctt
tcgctggtacaatgaacatcaaacgtacaaaaccggggcatggcaaaagc
tcagcccaagaaggtgccaatgacaacattcatgtgtcaaaccaatggtc
attggttctttcctctatgtccactgtcaggccagaccctggaaggggac
cagttcagcatagttgctccccacccccactgcactccccttatagaacc
cccatgtttttcatggttgggtcatagcaggccaggatactggtgcagtg
gatccacaaaaggtcagaatcctgactccatcag
ttctgtcctctctttatcgggtgggaaaggatacggtacccccacccaac
acacaaatccctgaaggattccgatgctaccctaattaccagcccctgtg
agattcacacaggaagggttggctcatttaaagaaactaaaggaggaagc
attgatgcagatgcagaagaaaggccactataaaccaatgacatagttta
tccgaatagggcaaccagtgagactggtttataagcgttctattaaaagc
catctccaactgtggaccaatgctagccagctaagagattttcaaagtca
ctttatgtcttcccaagctgaggatggtgcttgccaccaaacctgatgaa
tgtcctgtattcaattcctaggatctacaatcccacactgtagaaggaga
gaacagactcttgcaaattgttctctgacctccacacagacacggttgga
ggtggaagtctatcttctctaaggttaagggtgtggctcaggggaggagt
gctatccgaggatgccctgagttctactttcagcagcagtgacgaaagga
gaggggggaggagagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_34724404_34724759
seq2: B6Ng01-006J02.b_125_480

seq1  ACGATGGCTGTATAGAGATCCCAGCACAGCTGGGGGGAGGTCATCTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGGCTGTATAGAGATCCCAGCACAGCTGGGGGGAGGTCATCTGCTT  50

seq1  TACCACTAGATCTCACCCGCTTTCGCTGGTACAATGAACATCAAACGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTAGATCTCACCCGCTTTCGCTGGTACAATGAACATCAAACGTAC  100

seq1  AAAACCGGGGCATGGCAAAAGCTCAGCCCAAGAAGGTGCCAATGACAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCGGGGCATGGCAAAAGCTCAGCCCAAGAAGGTGCCAATGACAACA  150

seq1  TTCAGGTGTCAAACCAATGGTCATTGGTTCTTTCCTCTATGTCCACTGTC  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGTCAAACCAATGGTCATTGGTTCTTTCCTCTATGTCCACTGTC  200

seq1  AGGCCAGACCCTGGAAGGGGACCAGTTCAGCAGAGTTGCTCCCCACCCCC  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGCCAGACCCTGGAAGGGGACCAGTTCAGCATAGTTGCTCCCCACCCCC  250

seq1  ACTGCACTCCCCTTATAGAACCCCCATGTTTTTCATGGTTGGGTCATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACTCCCCTTATAGAACCCCCATGTTTTTCATGGTTGGGTCATAGC  300

seq1  AGGCCAGGAGACAGGTGCAGTGGAGCCACAAAAGGTCAGAATCCTGACTC  350
      ||||||||| || ||||||||||| |||||||||||||||||||||||||
seq2  AGGCCAGGATACTGGTGCAGTGGATCCACAAAAGGTCAGAATCCTGACTC  350

seq1  CATCAG  356
      ||||||
seq2  CATCAG  356

seq1: chr7_127977585_127978158
seq2: B6Ng01-006J02.g_68_641

seq1  GAATTCTTCTGTCCTCTCTTTATCGGGTGGGAAAGGATACGGTACCCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGTCCTCTCTTTATCGGGTGGGAAAGGATACGGTACCCCCA  50

seq1  CCCAACACACAAATCCCTGAAGGATTCCGATGCTACCCTAATTACCAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACACAAATCCCTGAAGGATTCCGATGCTACCCTAATTACCAGCC  100

seq1  CCTGTGAGATTCACACAGGAAGGGTTGGCTCATTTAAAGAAACTAAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGATTCACACAGGAAGGGTTGGCTCATTTAAAGAAACTAAAGGA  150

seq1  GGAAGCATTGATGCAGATGCAGAAGAAAGGCCACTATAAACCAATGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCATTGATGCAGATGCAGAAGAAAGGCCACTATAAACCAATGACAT  200

seq1  AGTTTATCCGAATAGGGCAACCAGTGAGACTGGTTTATAAGCGTTCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATCCGAATAGGGCAACCAGTGAGACTGGTTTATAAGCGTTCTATT  250

seq1  AAAAGCCATCTCCAACTGTGGACCAATGCTAGCCAGCTAAGAGATTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCATCTCCAACTGTGGACCAATGCTAGCCAGCTAAGAGATTTTCA  300

seq1  AAGTCACTTTATGTCTTCCCAAGCTGAGGATGGTGCTTGCCACCAAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACTTTATGTCTTCCCAAGCTGAGGATGGTGCTTGCCACCAAACCT  350

seq1  GATGAATGTCCTGTATTCAATTCCTAGGATCTACAATCCCACACTGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGTCCTGTATTCAATTCCTAGGATCTACAATCCCACACTGTAGA  400

seq1  AGGAGAGAACAGACTCTTGCAAATTGTTCTCTGACCTCCACACAGACACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAACAGACTCTTGCAAATTGTTCTCTGACCTCCACACAGACACG  450

seq1  GTTGGAGGTGGAAGTCTATCTTCTCTAAGGTTAAGGGTGTGGCTCAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGGTGGAAGTCTATCTTCTCTAAGGTTAAGGGTGTGGCTCAGGGG  500

seq1  AGGAGTGCTATCCGAGGATGCCCTGAGTTCTACTTTCAGCAGCAGTGACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGCTATCCGAGGATGCCCTGAGTTCTACTTTCAGCAGCAGTGACG  550

seq1  AAAGGAGAGGGGGGAGGAGAGAGG  574
      ||||||||||||||||||||||||
seq2  AAAGGAGAGGGGGGAGGAGAGAGG  574