BAC Information

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BAC

Clone NameB6Ng01-006M23
Chromosome1 (Build37)
Map Location 93,461,073 - 93,604,625
singlet/doubletdoublet
Overlap genenone
Upstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1
Downstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006M23.bB6Ng01-006M23.g
ACCDH843564DH843565
length1,0841,096
definitionDH843564|Mus musculus domesticus DNA, BAC clone: B6Ng01-006M23, 5' end.DH843565|Mus musculus domesticus DNA, BAC clone: B6Ng01-006M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,603,530 - 93,604,625)(93,461,073 - 93,462,178)
sequence
gaattcagttcccctgtagcctcccctcccccagccttaatggttccact
gtttacacctggatggagcttgccggctcaatcgttctgccacgcccact
gctggaaccggcagctttgctgttcggagccgtacacgtggtcaccctgc
tactggactccaagaatatttggtgggaatcaggcccctcccccttcctt
cataacggagtgctggaatagtaaaaattgaaccttgagcagagaccttt
gtcttggttccttcctcatctcgcgcagcccagcccctcttctcttccag
gtttccaaaatgcctttccaggctagaacccagacctgtgatctgctggc
cgggcacaacatccacctcaaatcctggtatgagtcagggactgtgaata
caactagctaccatctaaaaagaattataaatgctgtgtggagaaatgat
atctgagaccttggttctctttccaggtttttatgcatcctgtctggtga
tgagcagaaaaagaaaaccccatgtttacaagaaaacaagggtagaaatg
atcaagctggagtatgatcagcaacagagtatctgcttagcaggatactg
tggggggaaaggggagacaagtagacagatgggcagacacgcacagagag
tcagagagaaagataccggcagagagagacacagaaaacatattcaaggg
aaacaacagacaaaagaagttgacctgaagcagcctcagactatagacac
cagcttcaaaataactaaaatgtaaaacgattatcactcatgtgtttagc
tgagtaaagacacagttaaaaaaaattgtcaaagaagctggagactttta
atgggtattgagacatgttgaaaaatgttgaacacatgggtggatggacg
aatttgacgcagattatacacactgaagagagataggagcacttagcagg
gaagactgtcaggcgtgattcagagaagccacagaaggcaggttaggaga
aggactataagagaagggctgcaaggcacaggccctgctggatctgggag
gcagcacatggcaaaacctggaatgacggctgtg
gaattcattttgaaggttgaatttgatttttggaggaccacctgctgagg
ccctggggtgcgggtatcttaccctgggccttggaggctccctgaggtgc
ccttctctctcccagaccctggatcttaggtctggcttcacacccagcag
cctgagaggggcctcttggaaaatgtgcattcgtgcttttgaaatcccaa
gcgggctgtgcatgctgcttcggaaggagtgactgtggttccgagccaag
ttgtggtgagcagtgcactctgagctcccttcaagggaccctggggtcag
ctgggaggggtcttactccacccaagagctcgaatttcagggcttgtgaa
atgcaatgggaattccaggtgtgtgagaacaagctggttttgctgtgaga
agctttgcaggcaggagagcaagtcctaccaagtccagcttgctcccttt
gcatctactgctctaggcacttgggaaggcacctagtcccatccccgcaa
atgcatccctgactacttgcatctctctcccttagccatggtttctgggg
gctacttccctttcctgtgtctcttctgcacgttggtgacagctgttctc
cagtgctccatgaggtctgtgatcctgatcaagttccaccttaagactga
catatagattggccactcacctgtctctagggctgggctgggtgctgtga
gaacacgtgtgttttgggggcctggctgcagagtgctggtctcatgcagt
aggtctcttgcctgatgattaaaccttttgtttcctctcaaagacctgga
ggaccagattggtgatactcacttatgaactaaaactttgaaaaatcccc
tgagcgtcctaatactagtgtcttcttctgtccccattggtagaacacaa
caatggcagtttagttcccagacttggaaagagggacgtctgagatcaag
tgcctgtgtttggagtctacagagggtcttgcctctgcttcatgatggtg
cttagaatgctgcatcttcatatgtagaatcgcgggagggttgaagatcc
agcctagtcctaaaggccattcatatgaggagtcctcctgccctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93603530_93604625
seq2: B6Ng01-006M23.b_45_1128 (reverse)

seq1  CACAGCCTGCATTCCAAGTTTT-CCATGTGCTGCCT-CCAGACTCCACCA  48
      |||||||  ||||||| ||||| ||||||||||||| ||||| |||| ||
seq2  CACAGCCGTCATTCCAGGTTTTGCCATGTGCTGCCTCCCAGA-TCCAGCA  49

seq1  GGACCTGCTGCCTTGCAGCCCTTCTCTCTAT-GTCCTCTCCCTAACCCTG  97
      || |||| ||||||||||||||||||| ||| |||||   ||||| ||||
seq2  GGGCCTG-TGCCTTGCAGCCCTTCTCT-TATAGTCCTTCTCCTAA-CCTG  96

seq1  CCTTCTGTGGCTTCTCTGAATTCACGCCTGGACAGTCTTCCCTGCTAAGT  147
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  CCTTCTGTGGCTTCTCTGAA-TCACGCCT-GACAGTCTTCCCTGCTAAGT  144

seq1  GCTCCTATTCTCTCTTCAGCTGTGTCTAATCTGCTGTCAAATTCGTCCAT  197
      ||||||| ||||||||||| ||||| |||||||| |||||||||||||||
seq2  GCTCCTA-TCTCTCTTCAG-TGTGTATAATCTGC-GTCAAATTCGTCCAT  191

seq1  ACACCCATGTGTTCAACATTTTTTCAACATGTCTCTAATACCCATTTAAA  247
       ||||||||||||||||| |||||||||||||||| ||||||||||  ||
seq2  CCACCCATGTGTTCAACA-TTTTTCAACATGTCTC-AATACCCATT--AA  237

seq1  AGGTCTCCAGCTTCTTTGACAATTTTTTTTAACTGTGTCTTTTACTCAGC  297
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGTCTCCAGCTTCTTTGACAATTTTTTTTAACTGTGTC-TTTACTCAGC  286

seq1  TAAACACATGAGTGATAATCGTTTTACATTTTAGTTATTTTGAAGCTGGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACATGAGTGATAATCGTTTTACATTTTAGTTATTTTGAAGCTGGT  336

seq1  GTCTATAGTCTGAGGCTGCTTCAGGTCAACTTCTTTTGTCTGTTGTTTCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATAGTCTGAGGCTGCTTCAGGTCAACTTCTTTTGTCTGTTGTTTCC  386

seq1  CTTGAATTTGTTTTCTGTCTCTCTCTCTGCCTGTCTCTTTCTCTCTGACT  447
      ||||||| |||||||||| |||||||||||| || |||||||||||||||
seq2  CTTGAATATGTTTTCTGTGTCTCTCTCTGCCGGTATCTTTCTCTCTGACT  436

seq1  CTCTGTGTGTGTCTGCCCATCTGTCTACTTGTCTCCCCTTTCCCCCCACA  497
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCGTGTCTGCCCATCTGTCTACTTGTCTCCCCTTTCCCCCCACA  486

seq1  GTATCCTGCTAAGCAGATACTCTGTTGCTGATCATACTCCAGCTTGATCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTGCTAAGCAGATACTCTGTTGCTGATCATACTCCAGCTTGATCA  536

seq1  TTTCTACCCTTGTTTTCTTGTAAACATGGGGTTTTCTTTTTCTGCTCATC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACCCTTGTTTTCTTGTAAACATGGGGTTTTCTTTTTCTGCTCATC  586

seq1  ACCAGACAGGATGTATAAAAACCTGGAAAGAGAACCAAGGTCTCAGATAT  647
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACCAGACAGGATGCATAAAAACCTGGAAAGAGAACCAAGGTCTCAGATAT  636

seq1  CATTTCTCCACACAGCATTTATAATTCTTTCTAGATGGTAGCTAGTCGTA  697
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  CATTTCTCCACACAGCATTTATAATTCTTTTTAGATGGTAGCTAGTTGTA  686

seq1  TTCACAGTCCCTGACTCATACCAGGATTTGAGGTGGATGTTGTGCCCGGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGTCCCTGACTCATACCAGGATTTGAGGTGGATGTTGTGCCCGGC  736

seq1  CAGCAGATCACAGGTCTGGGTTCTAGCCTGGAAAGGCATTTTGGAAACCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATCACAGGTCTGGGTTCTAGCCTGGAAAGGCATTTTGGAAACCT  786

seq1  GGAAGAGAAGAGGGGCTGGGCTGCGCGAGATGAGGAAGGAACCAAGACAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAAGAGGGGCTGGGCTGCGCGAGATGAGGAAGGAACCAAGACAA  836

seq1  AGGTCTCTGCTCAAGGTTCAATTTTTACTATTCCAGCACTCCGTTATGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCTGCTCAAGGTTCAATTTTTACTATTCCAGCACTCCGTTATGAA  886

seq1  GGAAGGGGGAGGGGCCTGATTCCCACCAAATATTCTTGGAGTCCAGTAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGGGAGGGGCCTGATTCCCACCAAATATTCTTGGAGTCCAGTAGC  936

seq1  AGGGTGACCACGTGTACGGCTCCGAACAGCAAAGCTGCCGGTTCCAGCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGACCACGTGTACGGCTCCGAACAGCAAAGCTGCCGGTTCCAGCAG  986

seq1  TGGGCGTGGCAGAACGATTGAGCCGGCAAGCTCCATCCAGGTGTAAACAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGTGGCAGAACGATTGAGCCGGCAAGCTCCATCCAGGTGTAAACAG  1036

seq1  TGGAACCATTAAGGCTGGGGGAGGGGAGGCTACAGGTGGAACTGAATTC  1096
      |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGAACCATTAAGGCTGGGGGAGGGGAGGCTACAGG-GGAACTGAATTC  1084

seq1: chr1_93461073_93462178
seq2: B6Ng01-006M23.g_65_1160

seq1  GAATTCATTTTGAAGGTTGAATTTGATTTTTGGAGGACCACCTGCTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGAAGGTTGAATTTGATTTTTGGAGGACCACCTGCTGAGG  50

seq1  CCCTGGGGTGCGGGTATCTTACCCTGGGCCTTGGAGGCTCCCTGAGGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGTGCGGGTATCTTACCCTGGGCCTTGGAGGCTCCCTGAGGTGC  100

seq1  CCTTCTCTCTCCCAGACCCTGGATCTTAGGTCTGGCTTCACACCCAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTCTCCCAGACCCTGGATCTTAGGTCTGGCTTCACACCCAGCAG  150

seq1  CCTGAGAGGGGCCTCTTGGAAAATGTGCATTCGTGCTTTTGAAATCCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGGGGCCTCTTGGAAAATGTGCATTCGTGCTTTTGAAATCCCAA  200

seq1  GCGGGCTGTGCATGCTGCTTCGGAAGGAGTGACTGTGGTTCCGAGCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCTGTGCATGCTGCTTCGGAAGGAGTGACTGTGGTTCCGAGCCAAG  250

seq1  TTGTGGTGAGCAGTGCACTCTGAGCTCCCTTCAAGGGACCCTGGGGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGAGCAGTGCACTCTGAGCTCCCTTCAAGGGACCCTGGGGTCAG  300

seq1  CTGGGAGGGGTCTTACTCCACCCAAGAGCTCGAATTTCAGGGCTTGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGGGTCTTACTCCACCCAAGAGCTCGAATTTCAGGGCTTGTGAA  350

seq1  ATGCAATGGGAATTCCAGGTGTGTGAGAACAAGCTGGTTTTGCTGTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATGGGAATTCCAGGTGTGTGAGAACAAGCTGGTTTTGCTGTGAGA  400

seq1  AGCTTTGCAGGCAGGAGAGCAAGTCCTACCAAGTCCAGCTTGCTCCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCAGGCAGGAGAGCAAGTCCTACCAAGTCCAGCTTGCTCCCTTT  450

seq1  GCATCTACTGCTCTAGGCACTTGGGAAGGCACCTAGTCCCATCCCCGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTACTGCTCTAGGCACTTGGGAAGGCACCTAGTCCCATCCCCGCAA  500

seq1  ATGCATCCCTGACTACTTGCATCTCTCTCCCTTAGCCATGGTTTCTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCCCTGACTACTTGCATCTCTCTCCCTTAGCCATGGTTTCTGGGG  550

seq1  GCTACTTCCCTTTCCTGTGTCTCTTCTGCACGTTGGTGACAGCTGTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTCCCTTTCCTGTGTCTCTTCTGCACGTTGGTGACAGCTGTTCTC  600

seq1  CAGTGCTCCATGAGGTCTGTGATCCTGATCAAGTTCCACCTTAAGACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCCATGAGGTCTGTGATCCTGATCAAGTTCCACCTTAAGACTGA  650

seq1  CATATAGATTGGCCACTCACCTGTCTCTAGGGCTGGGCTGGGTGCTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGATTGGCCACTCACCTGTCTCTAGGGCTGGGCTGGGTGCTGTGA  700

seq1  GAACACGTGTGTTTTGGGGGCCTGGCTGCAGAGTGCTGGTCTCATGCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACGTGTGTTTTGGGGGCCTGGCTGCAGAGTGCTGGTCTCATGCAGT  750

seq1  AGGTCTCTTGCCTGATGATTAAACCTTTTGTTTCCTCTCAAAGACCTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCTTGCCTGATGATTAAACCTTTTGTTTCCTCTCAAAGACCTGGA  800

seq1  GGACCAGATTGGTGATACTCACTTATGAACTAAAACTTTGAAAAATCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGATTGGTGATACTCACTTATGAACTAAAACTTTGAAAAATCCCC  850

seq1  TGAGCGTCCTAATACTAGTGTCTTCTTCTGTCCCCATTGGTAGAACACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGTCCTAATACTAGTGTCTTCTTCTGTCCCCATTGGTAGAACACAA  900

seq1  CAATGGCAGTTTAGTTCCCAGACTTGGAAAGAGGGGACGTCTGAGATCAA  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAATGGCAGTTTAGTTCCCAGACTTGGAAAGA-GGGACGTCTGAGATCAA  949

seq1  GGTGCCTGTGGTTTTGGAGTCTACAGAGGGTCTTGCCTCTGCTTCCATGA  1000
       |||||||||  |||||||||||||||||||||||||||||||| |||||
seq2  -GTGCCTGTG--TTTGGAGTCTACAGAGGGTCTTGCCTCTGCTT-CATGA  995

seq1  TGGTGCTTAGAATGCTGCATCTTCATATGGTAGAATCGGCGGAGGGTGAG  1050
      |||||||||||||||||||||||||||| |||||||||  |||||||   
seq2  TGGTGCTTAGAATGCTGCATCTTCATAT-GTAGAATCGCGGGAGGGTTGA  1044

seq1  AGATCCAGGCTAGTTCCTATAAGCCCATTCATTATGATGGAGTCCTCCTG  1100
      |||||||| |||| ||||| ||| ||||||| ||||| ||||||||||||
seq2  AGATCCAGCCTAG-TCCTA-AAGGCCATTCA-TATGA-GGAGTCCTCCTG  1090

seq1  CCCTAA  1106
      ||||||
seq2  CCCTAA  1096