BAC Information

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BAC

Clone NameB6Ng01-007C13
Chromosome1 (Build37)
Map Location 41,847,374 - 41,975,529
singlet/doubletdoublet
Overlap genenone
Upstream geneMfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582, 2610017I09Rik, Pou3f3, Mrps9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007C13.bB6Ng01-007C13.g
ACCDH843815DH843816
length6821,076
definitionDH843815|Mus musculus domesticus DNA, BAC clone: B6Ng01-007C13, 5' end.DH843816|Mus musculus domesticus DNA, BAC clone: B6Ng01-007C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,974,848 - 41,975,529)(41,847,374 - 41,848,460)
sequence
gaattcaaggcactgccttcctttttaggacaacaccaaaattatcagct
ttctacccaaggtcccaataaggacaggattaagtgtaaggggaagggat
tcagacagtagcaaactgccattgtccctggcctctcaggttccctctat
ctaaatgcatcaaaaggatacagtgcaggtacaaaagaattcccctctta
attaaaggattactttctccctcagagtataccccagctttatggccggc
cctccttcctcaagctctttctcctagagcaaaggaagaagggcgacagg
agaactgaaagtgaccaggaagtccactccctgaagctgtggcacttaag
acggggctttcgagcttcaggctaggctccactttttggggaaaaggtta
ttttttctatccacagctttaaaagtctctgagacctatatctgggtcct
ttcagcgaaatcttgctagtgtatgcaatggtgtcagcatttggaagctg
attatgggatggatccctgcatatggcaatcactagatggtccatccttt
cgtcacagctccaaattttgtctctgtaatcggccatcactgcaaagaga
ggcccattggacttgcaaactttatatgccccagtacaggtgaacgccag
ggccaaaaagggggagtgggtgggtaggggag
gaattcatggccctggggagctgtgatgtggccctgaagtgggagaactt
caggagaggtagcatcacagccagaggaaagtatgaaaagacttcaaggg
aaagagggtcttcgaatccttcgtgatttttgaaaggctttataaagagt
attctcacaaagagacatggatcctctacagttgttgtttcaaatggcag
tacctactccaaggtctttaaaagtcatccataagaactaacagcacagt
ggcctcaaactcccaccatgcagaatagttgtgtatgactccactcaatg
agtatatttattgaagatgtgtattgctctccttttcttttccttggggg
catactgaaaggtatcattttgtttagtctgcacgggaatgactaatgca
tttcaatgagacaatgagaaggccaggtactggcaaatgagcaactaggg
cttataaacagagctgacaagactgtaaattattacaattatgttattat
ctagtgaaaagtcatcatgttgtcctatgacagaggtaatccaatagcag
atatgcataaaaataccacaattccaaaaaatcgaaaccattacatagca
acattatcctttaataatagccactagaaacaaatccttattaacagtgg
aattcatagataaatagataattgtaatatgctattaaagtatgaaaaat
tgaaatagtgtaagatttttgtcagtagggtatcatggatgggcctgaag
tacattatgttaaggaaaaacactggccacagaaaaacagacatgattct
attcaaaaggataattttaaaatgttaatgtcaatagaagtagagttaag
tataaagagttaacaaagtaggagcacagaccactcaatgtgtatgtttt
gccctgcagtaagagaaatactacatttcttaagtaatgaagaagaatat
aatcataaagttgaatattgtctcaaaagttaaaagggatttgtgtacag
tcacataatgaataaaacaggatggggtagaatgtgcttatccatatgga
aactggaggctgaaaaaatgcacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_41974848_41975529
seq2: B6Ng01-007C13.b_44_725 (reverse)

seq1  CTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCACCTGTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCACCTGTACT  50

seq1  GGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGC  100

seq1  CGATTACAGAGACAAAATTTGGAGCTGTGACGAAAGGATGGACCATCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTACAGAGACAAAATTTGGAGCTGTGACGAAAGGATGGACCATCTAG  150

seq1  TGATTGCCATATGCAGGGATCCATCCCATAATCAGCTTCCAAATGCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCCATATGCAGGGATCCATCCCATAATCAGCTTCCAAATGCTGAC  200

seq1  ACCATTGCATACACTAGCAAGATTTCGCTGAAAGGACCCAGATATAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGCATACACTAGCAAGATTTCGCTGAAAGGACCCAGATATAGGTC  250

seq1  TCAGAGACTTTTAAAGCTGTGGATAGAAAAAATAACCTTTTCCCCAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGACTTTTAAAGCTGTGGATAGAAAAAATAACCTTTTCCCCAAAAA  300

seq1  GTGGAGCCTAGCCTGAAGCTCGAAAGCCCCGTCTTAAGTGCCACAGCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCCTAGCCTGAAGCTCGAAAGCCCCGTCTTAAGTGCCACAGCTTC  350

seq1  AGGGAGTGGACTTCCTGGTCACTTTCAGTTCTCCTGTCGCCCTTCTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTGGACTTCCTGGTCACTTTCAGTTCTCCTGTCGCCCTTCTTCCT  400

seq1  TTGCTCTAGGAGAAAGAGCTTGAGGAAGGAGGGCCGGCCATAAAGCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTAGGAGAAAGAGCTTGAGGAAGGAGGGCCGGCCATAAAGCTGGG  450

seq1  GTATACTCTGAGGGAGAAAGTAATCCTTTAATTAAGAGGGGAATTCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTCTGAGGGAGAAAGTAATCCTTTAATTAAGAGGGGAATTCTTTT  500

seq1  GTACCTGCACTGTATCCTTTTGATGCATTTAGATAGAGGGAACCTGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGCACTGTATCCTTTTGATGCATTTAGATAGAGGGAACCTGAGAG  550

seq1  GCCAGGGACAATGGCAGTTTGCTACTGTCTGAATCCCTTCCCCTTACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGACAATGGCAGTTTGCTACTGTCTGAATCCCTTCCCCTTACACT  600

seq1  TAATCCTGTCCTTATTGGGACCTTGGGTAGAAAGCTGATAATTTTGGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTGTCCTTATTGGGACCTTGGGTAGAAAGCTGATAATTTTGGTGT  650

seq1  TGTCCTAAAAAGGAAGGCAGTGCCTTGAATTC  682
      ||||||||||||||||||||||||||||||||
seq2  TGTCCTAAAAAGGAAGGCAGTGCCTTGAATTC  682

seq1: chr1_41847374_41848460
seq2: B6Ng01-007C13.g_68_1143

seq1  GAATTCATGGCCCTGGGGAGCTGTGATGTGGCCCTGAAGTGGGAGAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCCCTGGGGAGCTGTGATGTGGCCCTGAAGTGGGAGAACTT  50

seq1  CAGGAGAGGTAGCATCACAGCCAGAGGAAAGTATGAAAAGACTTCAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGGTAGCATCACAGCCAGAGGAAAGTATGAAAAGACTTCAAGGG  100

seq1  AAAGAGGGTCTTCGAATCCTTCGTGATTTTTGAAAGGCTTTATAAAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGGTCTTCGAATCCTTCGTGATTTTTGAAAGGCTTTATAAAGAGT  150

seq1  ATTCTCACAAAGAGACATGGATCCTCTACAGTTGTTGTTTCAAATGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCACAAAGAGACATGGATCCTCTACAGTTGTTGTTTCAAATGGCAG  200

seq1  TACCTACTCCAAGGTCTTTAAAAGTCATCCATAAGAACTAACAGCACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACTCCAAGGTCTTTAAAAGTCATCCATAAGAACTAACAGCACAGT  250

seq1  GGCCTCAAACTCCCACCATGCAGAATAGTTGTGTATGACTCCACTCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAAACTCCCACCATGCAGAATAGTTGTGTATGACTCCACTCAATG  300

seq1  AGTATATTTATTGAAGATGTGTATTGCTCTCCTTTTCTTTTCCTTGGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTTATTGAAGATGTGTATTGCTCTCCTTTTCTTTTCCTTGGGGG  350

seq1  CATACTGAAAGGTATCATTTTGTTTAGTCTGCACGGGAATGACTAATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGAAAGGTATCATTTTGTTTAGTCTGCACGGGAATGACTAATGCA  400

seq1  TTTCAATGAGACAATGAGAAGGCCAGGTACTGGCAAATGAGCAACTAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATGAGACAATGAGAAGGCCAGGTACTGGCAAATGAGCAACTAGGG  450

seq1  CTTATAAACAGAGCTGACAAGACTGTAAATTATTACAATTATGTTATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAACAGAGCTGACAAGACTGTAAATTATTACAATTATGTTATTAT  500

seq1  CTAGTGAAAAGTCATCATGTTGTCCTATGACAGAGGTAATCCAATAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGAAAAGTCATCATGTTGTCCTATGACAGAGGTAATCCAATAGCAG  550

seq1  ATATGCATAAAAATACCACAATTCCAAAAAATCGAAACCATTACATAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATAAAAATACCACAATTCCAAAAAATCGAAACCATTACATAGCA  600

seq1  ACATTATCCTTTAATAATAGCCACTAGAAACAAATCCTTATTAACAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATCCTTTAATAATAGCCACTAGAAACAAATCCTTATTAACAGTGG  650

seq1  AATTCATAGATAAATAGATAATTGTAATATGCTATTAAAGTATGAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATAGATAAATAGATAATTGTAATATGCTATTAAAGTATGAAAAAT  700

seq1  TGAAATAGTGTAAGATTTTTGTCAGTAGGGTATCATGGATGGGCCTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAGTGTAAGATTTTTGTCAGTAGGGTATCATGGATGGGCCTGAAG  750

seq1  TACATTATGTTAAGGAAAAACACTGGCCACAGAAAAACAGACATGATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTATGTTAAGGAAAAACACTGGCCACAGAAAAACAGACATGATTCT  800

seq1  ATTCAAAAGGATAATTTTAAAATGTTAATGTCAATAGAAGTAGAGTTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAAGGATAATTTTAAAATGTTAATGTCAATAGAAGTAGAGTTAAG  850

seq1  TATAAAGAGTTAACAAAGTAGGAGCACAGACCACTCAATGTGTATGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGAGTTAACAAAGTAGGAGCACAGACCACTCAATGTGTATGTTTT  900

seq1  GCCCTGCAGTAAGAGAAATACTACA-TTCTTAAGTAATG-AGAAGAATAT  948
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  GCCCTGCAGTAAGAGAAATACTACATTTCTTAAGTAATGAAGAAGAATAT  950

seq1  AATCAATAAAGTTGAATTAATTGTCTCAAAAGTTAAAAGGAATTTGTGTA  998
      |||| ||||||||||||  ||||||||||||||||||||| |||||||||
seq2  AATC-ATAAAGTTGAAT--ATTGTCTCAAAAGTTAAAAGGGATTTGTGTA  997

seq1  CAGTCACCATAAATGATAAAAACAGGATGGGGTAGAATGTGCTTAATCCC  1048
      |||||| ||| |||||  |||||||||||||||||||||||||| |||| 
seq2  CAGTCA-CAT-AATGAATAAAACAGGATGGGGTAGAATGTGCTT-ATCC-  1043

seq1  AATTATTGGGAAACT-GAGGCTGGAAAAAAATCCCACTTC  1087
          ||  ||||||| |||||||  |||||||  ||||||
seq2  ----ATATGGAAACTGGAGGCTG--AAAAAAT-GCACTTC  1076