BAC Information

Click to search

BAC

Clone NameB6Ng01-008B22
Chromosome1 (Build37)
Map Location 92,028,833 - 92,176,757
singlet/doubletdoublet
Overlap geneIqca, Cxcr7
Upstream geneSh3bp4, LOC383542, EG665688, Centg2, Gbx2, Asb18
Downstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008B22.bB6Ng01-008B22.g
ACCDH844484DH844485
length1,0921,103
definitionDH844484|Mus musculus domesticus DNA, BAC clone: B6Ng01-008B22, 5' end.DH844485|Mus musculus domesticus DNA, BAC clone: B6Ng01-008B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,028,833 - 92,029,932)(92,175,634 - 92,176,757)
sequence
gaattcatttgggtcgtttgtaactccctcctcttgctgtttttgcactt
gaaggttctaataaatttacatcctatgctaacgagcatcctgtcctttg
ggcgcaaacatcttctcttctttagcgactctggtcatatgaattcaaat
ttgttaactggccacataaacagcaactcatttaaaaataaattagggat
attaaaaggagaggggaccatgataacatacgatgtattgaaatgcatgg
gctgtagattaatgcatcttaatgaaggctccccatgtgggcaaaccatc
acatttgccagctctccacagttaacgacccagaacggaataacgaaacc
tacatttccagcgaggtcctctgtcagcaaaacacacacacattaataat
tgatgttgctgtagaaatgtgacgtgaagcgacacttcctgagttttcag
gggaaggaagactccacgctccgttaatgtcgatgcttagctaatgttcg
acaggctttggattttaaaacccttgttgaaattaggaagagaaaacggt
catttataaaaatcttctcagtgtatttgtccccaatagactgggaatta
tgtggcgtggtgctggctattatccaaagatcttctgtctcggagtggtg
gttgtcaccctaaggggaagaacggatctctgctagtgaccttgttacac
ctgctctcccaggtcctgaacgtgtgcactgatgcttgggggcagtgctt
agatggacggccttggcacccaggtgtctgattttgtaaaaggaagatct
caggttgcagaacacctaactcttcatcagtcccattgtaccaagtggtg
ggtggcccatcatttcaaagtcatctgtctgtgtgtatatagcttgtgag
tccataaacgcacctactctgcgcaaggacagaacgaagcagatgtgaag
gtcttcaggaagagatcattttgtttcctctctgggttgacaagttcagt
atgaatctttagatccactatgttagctgcaccgatctgttaaagacagg
atgtttttctagcccattggagtcaattctttacgagtccag
gaattctcacgagcaggtggaagcctatgactgctgatcctgcctccttg
ttttatatcctcaagctactgtgacttccccgctgtcactaatgtcacag
tgagtataattggagtgccacttgccaaaagacagtggtgcccatcaaat
gctaaatcagtgtcctagagccagggtccacagacggtatgacatgtcag
tgatgtcagccgtgtcccacaagcagctgaaggagccactgagatcagtg
atgtcactctgatgatagtgccacccacagccccacaggccacctcttcc
agaactagttgacatccactctggaagctgcagaaagatccctcccaatg
ggacacgctcccaatgggacacgctcccaagccttccttttcctctaact
actggaacgttaacttcatcactaaagaatcaaaatatttaaaagatact
ctgcccaattaatgcagcgacacacagacagaagtgtttgtggggttttc
ggctttccttaattaaagatctccatggagaaataaacaaatactctcct
cttggcgacgctgagataagaactggagaatgcagtcgccagctaaggta
caggagcctctgtgcgccggcagcgtggttaatttagggagtagcctggt
cttcctgggtgatcccaggcaggtctcggagcctcgattgacttgtccag
gctgtaaagtcttgcagggatgttaagatcagtcaaggaatgcctataaa
gtgctttgaactcttagagttagacattaaataaatacccagtgttatta
gaactccgctggggccctcgaatgttcgaaatgggactttattataatac
cctctgaagtttgccaagaataaattgaatgggtaaagtcaacatacttg
gctgtacttaatccagcttggctatttgccagaacttgcatcatgacgca
tgaatagagtctctggagcagcatgaaggagccatgtgaaggcaactgct
cactagctccatatctcatgcatcgttcagctctaatggccgccccaaga
ggggaaaaccaactaaattaaaatatagggactaaagaaaggcctcttgc
att
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92028833_92029932
seq2: B6Ng01-008B22.b_44_1135

seq1  GAATTCATTTGGGTCGTTTGTAACTCCCTCCTCTTGCTGTTTTTGCACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGGGTCGTTTGTAACTCCCTCCTCTTGCTGTTTTTGCACTT  50

seq1  GAAGGTTCTAATAAATTTACATCCTATGCTAACGAGCATCCTGTCCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTCTAATAAATTTACATCCTATGCTAACGAGCATCCTGTCCTTTG  100

seq1  GGCGCAAACATCTTCTCTTCTTTAGCGACTCTGGTCATATGAATTCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCAAACATCTTCTCTTCTTTAGCGACTCTGGTCATATGAATTCAAAT  150

seq1  TTGTTAACTGGCCACATAAACAGCAACTCATTTAAAAATAAATTAGGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAACTGGCCACATAAACAGCAACTCATTTAAAAATAAATTAGGGAT  200

seq1  ATTAAAAGGAGAGGGGACCATGATAACATACGATGTATTGAAATGCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGGAGAGGGGACCATGATAACATACGATGTATTGAAATGCATGG  250

seq1  GCTGTAGATTAATGCATCTTAATGAAGGCTCCCCATGTGGGCAAACCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGATTAATGCATCTTAATGAAGGCTCCCCATGTGGGCAAACCATC  300

seq1  ACATTTGCCAGCTCTCCACAGTTAACGACCCAGAACGGAATAACGAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCCAGCTCTCCACAGTTAACGACCCAGAACGGAATAACGAAACC  350

seq1  TACATTTCCAGCGAGGTCCTCTGTCAGCAAAACACACACACATTAATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCCAGCGAGGTCCTCTGTCAGCAAAACACACACACATTAATAAT  400

seq1  TGATGTTGCTGTAGAAATGTGACGTGAAGCGACACTTCCTGAGTTTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGCTGTAGAAATGTGACGTGAAGCGACACTTCCTGAGTTTTCAG  450

seq1  GGGAAGGAAGACTCCACGCTCCGTTAATGTCGATGCTTAGCTAATGTTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAAGACTCCACGCTCCGTTAATGTCGATGCTTAGCTAATGTTCG  500

seq1  ACAGGCTTTGGATTTTAAAACCCTTGTTGAAATTAGGAAGAGAAAACGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTTGGATTTTAAAACCCTTGTTGAAATTAGGAAGAGAAAACGGT  550

seq1  CATTTATAAAAATCTTCTCAGTGTATTTGTCCCCAATAGACTGGGAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATAAAAATCTTCTCAGTGTATTTGTCCCCAATAGACTGGGAATTA  600

seq1  TGTGGCGTGGTGCTGGCTATTATCCAAAGATCTTCTGTCTCGGAGTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCGTGGTGCTGGCTATTATCCAAAGATCTTCTGTCTCGGAGTGGTG  650

seq1  GTTGTCACCCTAAGGGGAAGAACGGATCTCTGCTAGTGACCTTGTTACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCACCCTAAGGGGAAGAACGGATCTCTGCTAGTGACCTTGTTACAC  700

seq1  CTGCTCTCCCAGGTCCTGAACGTGTGCACTGATGCTTGGGGGCAGTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCCCAGGTCCTGAACGTGTGCACTGATGCTTGGGGGCAGTGCTT  750

seq1  AGATGGACGGCCTTGGCACCCAGGTGTCTGATTTTGTAAAAGGAAGATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACGGCCTTGGCACCCAGGTGTCTGATTTTGTAAAAGGAAGATCT  800

seq1  CAGGTTGCAGAACACCTAACTCTTCATCAGGTCCCATTGTACCAAGTGGT  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGGTTGCAGAACACCTAACTCTTCATCA-GTCCCATTGTACCAAGTGGT  849

seq1  GGGTGGCCCATCATTTCAAAGTCATCTGTCTGTGTGTATATAGC-TGTGA  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGGTGGCCCATCATTTCAAAGTCATCTGTCTGTGTGTATATAGCTTGTGA  899

seq1  GTCCATAAACGCACCTACTCTGCGCAAGGACAGACAGAAGCAGAAGTGAA  949
      ||||||||||||||||||||||||||||||||||  |||||||| |||||
seq2  GTCCATAAACGCACCTACTCTGCGCAAGGACAGAACGAAGCAGATGTGAA  949

seq1  GGTCTTCAGGGAGAGATCATTTTTGTTTCACTCTCTGGGTTGAACAAGTT  999
      |||||||||| |||||||| ||||||||| |||||||||||| |||||||
seq2  GGTCTTCAGGAAGAGATCA-TTTTGTTTC-CTCTCTGGGTTG-ACAAGTT  996

seq1  CAGTATGAATCTTTAAGATCCACTATGTTAGCATGCACCGATCTGTTAAA  1049
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  CAGTATGAATCTTT-AGATCCACTATGTTAGC-TGCACCGATCTGTTAAA  1044

seq1  GAGTAGGAGTGTTTTTCTAGCCCATTGGAGTCAATTTCTTTACGAGTTCA  1099
      ||  |||| ||||||||||||||||||||||||| |||||||||||| ||
seq2  GA-CAGGA-TGTTTTTCTAGCCCATTGGAGTCAA-TTCTTTACGAGTCCA  1091

seq1  G  1100
      |
seq2  G  1092

seq1: chr1_92175634_92176757
seq2: B6Ng01-008B22.g_67_1169 (reverse)

seq1  AATGCAAAGAGG-CTTTCTTTTGGGTCCTTATTTTTATTTTGTAATTT--  47
      ||||| |||||| ||||||||   |||| ||| |||      ||||||  
seq2  AATGC-AAGAGGCCTTTCTTT--AGTCCCTATATTT------TAATTTAG  41

seq1  TTGTTTTCCCCCTC-TCGTGCGGCCATTTAGAGCCTGGAACGAATGCATG  96
      ||| ||| |||||| | | ||||||| |||||||   ||||| |||||||
seq2  TTGGTTTTCCCCTCTTGGGGCGGCCA-TTAGAGC--TGAACG-ATGCATG  87

seq1  AAGATATGGAAGCCTAGTGGAGCAGTTGCCTTCACAATGGCTCCTTTCAT  146
       |||||||||   ||||| |||||||||||||||| |||||||| |||||
seq2  -AGATATGGA--GCTAGT-GAGCAGTTGCCTTCAC-ATGGCTCC-TTCAT  131

seq1  GCTGCCTCCAGAGACTTCTATTCATGCGTCATGATGCCAAGTTCTGGCAA  196
      |||| |||||||||| |||||||||||||||||||| |||||||||||||
seq2  GCTG-CTCCAGAGAC-TCTATTCATGCGTCATGATG-CAAGTTCTGGCAA  178

seq1  ATAAGCCAAGCTGGATTAAGTTACAGCCAAGTATGTTGACTTTACCCATT  246
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AT-AGCCAAGCTGGATTAAG-TACAGCCAAGTATGTTGACTTTACCCATT  226

seq1  CAATTTATTCTTGGCAAACTTCAGAGGGTATTTATAATAAAGTCCCATTT  296
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAATTTATTCTTGGCAAACTTCAGAGGGTA-TTATAATAAAGTCCCATTT  275

seq1  CGAACATTCGAGGGCCCCAGCGGAGTTCTAATAACACTGGGTATTTATTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACATTCGAGGGCCCCAGCGGAGTTCTAATAACACTGGGTATTTATTT  325

seq1  AATGTCTAACTCTAAGAGTTCAAAGCACTTTATAGGCATTCCTTGACTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTAACTCTAAGAGTTCAAAGCACTTTATAGGCATTCCTTGACTGA  375

seq1  TCTTAACATCCCTGCAAGACTTTACAGCCTGGACAAGTCAATCGAGGCTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACATCCCTGCAAGACTTTACAGCCTGGACAAGTCAATCGAGGCTC  425

seq1  CGAGACCTGCCTGGGATCACCCAGGAAGACCAGGCTACTCCCTAAATTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACCTGCCTGGGATCACCCAGGAAGACCAGGCTACTCCCTAAATTAA  475

seq1  CCACGCTGCCGGCGCACAGAGGCTCCTGTACCTTAGCTGGCGACTGCATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCTGCCGGCGCACAGAGGCTCCTGTACCTTAGCTGGCGACTGCATT  525

seq1  CTCCAGTTCTTATCTCAGCGTCGCCAAGAGGAGAGTATTTGTTTATTTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTTCTTATCTCAGCGTCGCCAAGAGGAGAGTATTTGTTTATTTCT  575

seq1  CCATGGAGATCTTTAATTAAGGAAAGCCGAAAACCCCACAAACACTTCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGATCTTTAATTAAGGAAAGCCGAAAACCCCACAAACACTTCTG  625

seq1  TCTGTGTGTCGCTGCATTAATTGGGCAGAGTATCTTTTAAATATTTTGAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTCGCTGCATTAATTGGGCAGAGTATCTTTTAAATATTTTGAT  675

seq1  TCTTTAGTGATGAAGTTAACGTTCCAGTAGTTAGAGGAAAAGGAAGGCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTGATGAAGTTAACGTTCCAGTAGTTAGAGGAAAAGGAAGGCTT  725

seq1  GGGAGCGTGTCCCATTGGGAGCGTGTCCCATTGGGAGGGATCTTTCTGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCGTGTCCCATTGGGAGCGTGTCCCATTGGGAGGGATCTTTCTGCA  775

seq1  GCTTCCAGAGTGGATGTCAACTAGTTCTGGAAGAGGTGGCCTGTGGGGCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAGAGTGGATGTCAACTAGTTCTGGAAGAGGTGGCCTGTGGGGCT  825

seq1  GTGGGTGGCACTATCATCAGAGTGACATCACTGATCTCAGTGGCTCCTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGGCACTATCATCAGAGTGACATCACTGATCTCAGTGGCTCCTTC  875

seq1  AGCTGCTTGTGGGACACGGCTGACATCACTGACATGTCATACCGTCTGTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTGTGGGACACGGCTGACATCACTGACATGTCATACCGTCTGTG  925

seq1  GACCCTGGCTCTAGGACACTGATTTAGCATTTGATGGGCACCACTGTCTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGGCTCTAGGACACTGATTTAGCATTTGATGGGCACCACTGTCTT  975

seq1  TTGGCAAGTGGCACTCCAATTATACTCACTGTGACATTAGTGACAGCGGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAGTGGCACTCCAATTATACTCACTGTGACATTAGTGACAGCGGG  1025

seq1  GAAGTCACAGTAGCTTGAGGATATAAAACAAGGAGGCAGGATCAGCAGTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCACAGTAGCTTGAGGATATAAAACAAGGAGGCAGGATCAGCAGTC  1075

seq1  ATAGGCTTCCACCTGCTCGTGAGAATTC  1124
      ||||||||||||||||||||||||||||
seq2  ATAGGCTTCCACCTGCTCGTGAGAATTC  1103