BAC Information

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BAC

Clone NameB6Ng01-008O08
Chromosome1 (Build37)
Map Location 73,456,315 - 73,560,859
singlet/doubletdoublet
Overlap geneLOC672208
Upstream geneMarch4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc
Downstream geneLOC100043291, Tns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008O08.bB6Ng01-008O08.g
ACCDH844997DH844998
length2961,001
definitionDH844997|Mus musculus domesticus DNA, BAC clone: B6Ng01-008O08, 5' end.DH844998|Mus musculus domesticus DNA, BAC clone: B6Ng01-008O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,456,315 - 73,456,610)(73,559,877 - 73,560,859)
sequence
gaattcagcattcatgaaagtttccagagctggttggactccagagagcc
ccagggtgtgcccctgtcacctctgtactctggccagagcatggattgcc
ctctgactctggtctggccatagtacaataccacagagaggcccatatcc
ctgtcttaatctgctcagctcagagatgccccttccacactgcccctaag
ggcatcagccaatacactgccaggaaatgtaggcaccaggcaacatagtt
caaagagatagggagggcagatgccaggggtggaggtgggggtggg
gaattcttaattagaaactccacagcagtgtatatagtggggtgtgcatt
ggatcataaaggataaaggccctgaccttgtatgtacgtctctagttatt
tctttatgggtcagtgaagagaaatggatcagtaagaggggaaaagacaa
agtcaaaaaacactggagaatttgatgattcgctgcttctatgaaataat
ggttcgtgggaagctgaacaaaggtcagcttggcaacagccaaagaggag
gctgcttggcagctgtgtggattcgagagcacgtgcagtcagattgcttc
ttcccacaaggctacatgcctcaggggatgtgaagggcaggactcaagga
gacccaaggccagcaagcctaagaggcaggcatcaattgggctctgcatg
tgccttcacttctaataaccatcttggtaacctatttccttactttctgt
actaggtgtatggcaaccctctcaaaacaaatgtatctagcaactcaaaa
tcccacctgtatcaggctatatgtatccccctttctgagcaaaactataa
aggttaattttagcccctaataacaaacaaacaaataatttctatttaaa
tatactcttaatataattgattttgaagaatagaaagggtggtatgtctt
gaatttttttggatgcatgtataggaaggcaaaattatgttctctagtaa
actttctgggagaatctcctgtttaacatctgtgcctatgcataatttag
tacatatgattaacaccagatacattatggaaaaggacatagaccataaa
aaatgattgatgattctatatatggaatcaaaacaagacaaatccctccc
ttactatatccactataatttcaaatcgtctttcttttggatggcttaaa
ggaaactcccaaacaacaccgagccttcttgagcaaccccactcatgtgg
tctgctgtggatcttgacaatgaccccttttgatttgcccgtacttactt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_73456315_73456610
seq2: B6Ng01-008O08.b_45_340

seq1  GAATTCAGCATTCATGAAAGTTTCCAGAGCTGGTTGGACTCCAGAGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATTCATGAAAGTTTCCAGAGCTGGTTGGACTCCAGAGAGCC  50

seq1  CCAGGGTGTGCCCCTGTCACCTCTGTACTCTGGCCAGAGCATGGATTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTGTGCCCCTGTCACCTCTGTACTCTGGCCAGAGCATGGATTGCC  100

seq1  CTCTGACTCTGGTCTGGCCATAGTACAATACCACAGAGAGGCCCATATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTCTGGTCTGGCCATAGTACAATACCACAGAGAGGCCCATATCC  150

seq1  CTGTCTTAATCTGCTCAGCTCAGAGATGCCCCTTCCACACTGCCCCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTAATCTGCTCAGCTCAGAGATGCCCCTTCCACACTGCCCCTAAG  200

seq1  GGCATCAGCCAATACACTGCCAGGAAATGTAGGCACCAGGCAACATAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAGCCAATACACTGCCAGGAAATGTAGGCACCAGGCAACATAGTT  250

seq1  CAAAGAGATAGGGAGGGCAGATGCCAGGGGTGGAGGTGGGGGTGGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGATAGGGAGGGCAGATGCCAGGGGTGGAGGTGGGGGTGGG  296

seq1: chr1_73559877_73560859
seq2: B6Ng01-008O08.g_71_1051 (reverse)

seq1  AAAAGGGGTACATTGTCAAGATCCACAGCAGACCACATGAGTGGGGTTGC  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGGT-CATTGTCAAGATCCACAGCAGACCACATGAGTGGGGTTGC  49

seq1  TCAAG-AGGCTCGGTTGTTGTTT-GGAGTTTCCTTTAAAGCCATCCAAGA  98
      ||||| |||||||| |||||||| |||||||||||| ||||||||||| |
seq2  TCAAGAAGGCTCGG-TGTTGTTTGGGAGTTTCCTTT-AAGCCATCCAAAA  97

seq1  GAAAGAGGATTTGAGTTATTAGTGGATATAGTAAGGGTGGGGTTTTGTCT  148
      |||||| |||||||  |  ||||||||||||||||||  ||| |||||||
seq2  GAAAGACGATTTGAAATTATAGTGGATATAGTAAGGG-AGGGATTTGTCT  146

seq1  TGTTTTGATT-CATATATTAGATCATTCAATCATTTTTCTATGGTCTATG  197
      |||||||||| |||||||   |||| |||||||||||| |||||||||||
seq2  TGTTTTGATTCCATATATAGAATCA-TCAATCATTTTT-TATGGTCTATG  194

seq1  TCCTTTTCCATAATGTATCTGGTGTTAATCATATGTACTAAATTATGCAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCCATAATGTATCTGGTGTTAATCATATGTACTAAATTATGCAT  244

seq1  AGGCACAGATGTTAAACAGGAGATTCTCCCAGAAAGTTTACTAGAGAACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGATGTTAAACAGGAGATTCTCCCAGAAAGTTTACTAGAGAACA  294

seq1  TAATTTTGCCTTCCTATACATGCATCCAAAAAAATTCAAGACATACCACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGCCTTCCTATACATGCATCCAAAAAAATTCAAGACATACCACC  344

seq1  CTTTCTATTCTTCAAAATCAATTATATTAAGAGTATATTTAAATAGAAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATTCTTCAAAATCAATTATATTAAGAGTATATTTAAATAGAAAT  394

seq1  TATTTGTTTGTTTGTTATTAGGGGCTAAAATTAACCTTTATAGTTTTGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTTGTTTGTTATTAGGGGCTAAAATTAACCTTTATAGTTTTGCT  444

seq1  CAGAAAGGGGGATACATATAGCCTGATACAGGTGGGATTTTGAGTTGCTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGGGGATACATATAGCCTGATACAGGTGGGATTTTGAGTTGCTA  494

seq1  GATACATTTGTTTTGAGAGGGTTGCCATACACCTAGTACAGAAAGTAAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATTTGTTTTGAGAGGGTTGCCATACACCTAGTACAGAAAGTAAGG  544

seq1  AAATAGGTTACCAAGATGGTTATTAGAAGTGAAGGCACATGCAGAGCCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGTTACCAAGATGGTTATTAGAAGTGAAGGCACATGCAGAGCCCA  594

seq1  ATTGATGCCTGCCTCTTAGGCTTGCTGGCCTTGGGTCTCCTTGAGTCCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGCCTGCCTCTTAGGCTTGCTGGCCTTGGGTCTCCTTGAGTCCTG  644

seq1  CCCTTCACATCCCCTGAGGCATGTAGCCTTGTGGGAAGAAGCAATCTGAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCACATCCCCTGAGGCATGTAGCCTTGTGGGAAGAAGCAATCTGAC  694

seq1  TGCACGTGCTCTCGAATCCACACAGCTGCCAAGCAGCCTCCTCTTTGGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGTGCTCTCGAATCCACACAGCTGCCAAGCAGCCTCCTCTTTGGCT  744

seq1  GTTGCCAAGCTGACCTTTGTTCAGCTTCCCACGAACCATTATTTCATAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCAAGCTGACCTTTGTTCAGCTTCCCACGAACCATTATTTCATAGA  794

seq1  AGCAGCGAATCATCAAATTCTCCAGTGTTTTTTGACTTTGTCTTTTCCCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCGAATCATCAAATTCTCCAGTGTTTTTTGACTTTGTCTTTTCCCC  844

seq1  TCTTACTGATCCATTTCTCTTCACTGACCCATAAAGAAATAACTAGAGAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTGATCCATTTCTCTTCACTGACCCATAAAGAAATAACTAGAGAC  894

seq1  GTACATACAAGGTCAGGGCCTTTATCCTTTATGATCCAATGCACACCCCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATACAAGGTCAGGGCCTTTATCCTTTATGATCCAATGCACACCCCA  944

seq1  CTATATACACTGCTGTGGAGTTTCT-CTTAAGAATTC  983
      |||||||||||||||||||||||||  ||||||||||
seq2  CTATATACACTGCTGTGGAGTTTCTAATTAAGAATTC  981