BAC Information

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BAC

Clone NameB6Ng01-009I17
Chromosome1 (Build37)
Map Location 149,898,863 - 150,029,093
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009I17.bB6Ng01-009I17.g
ACCDH845457DH845458
length4921,014
definitionDH845457|Mus musculus domesticus DNA, BAC clone: B6Ng01-009I17, 5' end.DH845458|Mus musculus domesticus DNA, BAC clone: B6Ng01-009I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,028,598 - 150,029,093)(149,898,863 - 149,899,876)
sequence
gaattctctaaggacaaattcctgatgagactttatatcttcagtgacat
tttatcttgacaacacatcattcatcttggtagatgcaatatattatcag
tttttaaacataaattttgtagaaatatacttttatacattttatttgca
agggtttctgtaagaccaaaagatatctggatatttcaggctaagtatga
aacttttttaagagaacagtattctgtttcaataacaggctgccactaaa
tatcttatgcaatatctagagaatcttggattttccccctttctgccatt
cccttcttcctgacttccttcctttcttcatttattaattttttccctcc
cccacattctctttcttttcctgctcctccttttttgggggggggagggg
agacattttttcctgcagcagataggaatgaatatggagaccaatagtca
gacattatgtagagagagaaatagtgggttggggtaagagag
gaattcttcacatagggtaagatatatatatataaatatatatccattgg
attaagggaagtaattgaggctgagagttggagaaatagtctatttcaga
caaaaccacacagaattgttatctagcactaaatggtcagcactgaaatc
atccatatgactaatattagcaagactgagtggtgtagaggaattttaga
ccagcaacatggctgctaacatccaaaactgttctaggtctgtgtgaaca
gatggaatgcaggcacacatttaagtccagacaatgatctgtaattgagg
gttagacagagtgatgaatcagagaaaatctggacagaatgagtcagaga
taggatatgccaaactcttaggaaaaaagaatatttaaatgagagaggca
gttcagttcgttgagtggatttgagtgggggcagtccattttgagtcagt
gcagtgagtgaacttcattggaattgagtttgcttatgagctcacagcat
agttaagtgtaggttaacagaggcaaaggaagccagagaattaggagcca
ggtttgaacaaattgccagagttactatgaagccaaatagaacaattcag
tgagaggttgagaggagccaaattgaatgagtcagcttggagaggactct
gagtcagaacagctgagttgaacaggccagccagagttcagaaatagcaa
gaaagagcttattcagcagcaagtctcaggggctgaaaggattctaggtt
tagattatatttctatggaggctagaagatccagggctctatgtctaggt
tagaaagacagaggcagcaaacttgcaagacaacaattacatataataaa
ataaaagttacttttacagatcagcaagtagttctgaatgtgtaggctta
tatatgcatgcatatgcatgttagacagctaataaaaaagaagagatgca
tttaaatgagaataatataggagggcatagatggaggaatgcatttggaa
attcataattatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_150028598_150029093
seq2: B6Ng01-009I17.b_40_531 (reverse)

seq1  CTCTCTCTCCTACCCCAACCCACTATTTCTCTCTCTACATAATGTCTGAC  50
          ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ----CTCTCTTACCCCAACCCACTATTTCTCTCTCTACATAATGTCTGAC  46

seq1  TATTGGTCTCCATATTCATTCCTATCTGCTGCAGGAAGAAGTGTCTCCCC  100
      ||||||||||||||||||||||||||||||||||||| || |||||||||
seq2  TATTGGTCTCCATATTCATTCCTATCTGCTGCAGGAAAAAATGTCTCCCC  96

seq1  TCCCCCCCCCAAAAAAGGAGGAGCAGGAAAAGAAAGAGAATGTGGGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCCAAAAAAGGAGGAGCAGGAAAAGAAAGAGAATGTGGGGGAG  146

seq1  GGAAAAAATTAATAAATGAAGAAAGGAAGGAAGTCAGGAAGAAGGGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAATTAATAAATGAAGAAAGGAAGGAAGTCAGGAAGAAGGGAATG  196

seq1  GCAGAAAGGGGGAAAATCCAAGATTCTCTAGATATTGCATAAGATATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGGGGGAAAATCCAAGATTCTCTAGATATTGCATAAGATATTTA  246

seq1  GTGGCAGCCTGTTATTGAAACAGAATACTGTTCTCTTAAAAAAGTTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGCCTGTTATTGAAACAGAATACTGTTCTCTTAAAAAAGTTTCAT  296

seq1  ACTTAGCCTGAAATATCCAGATATCTTTTGGTCTTACAGAAACCCTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCCTGAAATATCCAGATATCTTTTGGTCTTACAGAAACCCTTGCA  346

seq1  AATAAAATGTATAAAAGTATATTTCTACAAAATTTATGTTTAAAAACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATGTATAAAAGTATATTTCTACAAAATTTATGTTTAAAAACTGA  396

seq1  TAATATATTGCATCTACCAAGATGAATGATGTGTTGTCAAGATAAAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATTGCATCTACCAAGATGAATGATGTGTTGTCAAGATAAAATGT  446

seq1  CACTGAAGATATAAAGTCTCATCAGGAATTTGTCCTTAGAGAATTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAGATATAAAGTCTCATCAGGAATTTGTCCTTAGAGAATTC  492

seq1: chr1_149898863_149899876
seq2: B6Ng01-009I17.g_67_1080

seq1  GAATTCTTCACATAGGGTAAGATATATATATATAAATATATATCCATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACATAGGGTAAGATATATATATATAAATATATATCCATTGG  50

seq1  ATTAAGGGAAGTAATTGAGGCTGAGAGTTGGAGAAATAGTCTATTTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGGAAGTAATTGAGGCTGAGAGTTGGAGAAATAGTCTATTTCAGA  100

seq1  CAAAACCACACAGAATTGTTATCTAGCACTAAATGGTCAGCACTGAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCACACAGAATTGTTATCTAGCACTAAATGGTCAGCACTGAAATC  150

seq1  ATCCATATGACTAATATTAGCAAGACTGAGTGGTGTAGAGGAATTTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATATGACTAATATTAGCAAGACTGAGTGGTGTAGAGGAATTTTAGA  200

seq1  CCAGCAACATGGCTGCTAACATCCAAAACTGTTCTAGGTCTGTGTGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACATGGCTGCTAACATCCAAAACTGTTCTAGGTCTGTGTGAACA  250

seq1  GATGGAATGCAGGCACACATTTAAGTCCAGACAATGATCTGTAATTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAATGCAGGCACACATTTAAGTCCAGACAATGATCTGTAATTGAGG  300

seq1  GTTAGACAGAGTGATGAATCAGAGAAAATCTGGACAGAATGAGTCAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGACAGAGTGATGAATCAGAGAAAATCTGGACAGAATGAGTCAGAGA  350

seq1  TAGGATATGCCAAACTCTTAGGAAAAAAGAATATTTAAATGAGAGAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATATGCCAAACTCTTAGGAAAAAAGAATATTTAAATGAGAGAGGCA  400

seq1  GTTCAGTTCGTTGAGTGGATTTGAGTGGGGGCAGTCCATTTTGAGTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTTCGTTGAGTGGATTTGAGTGGGGGCAGTCCATTTTGAGTCAGT  450

seq1  GCAGTGAGTGAACTTCATTGGAATTGAGTTTGCTTATGAGCTCACAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGAGTGAACTTCATTGGAATTGAGTTTGCTTATGAGCTCACAGCAT  500

seq1  AGTTAAGTGTAGGTTAACAGAGGCAAAGGAAGCCAGAGAATTAGGAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGTGTAGGTTAACAGAGGCAAAGGAAGCCAGAGAATTAGGAGCCA  550

seq1  GGTTTGAACAAATTGCCAGAGTTACTATGAAGCCAAATAGAACAATTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAACAAATTGCCAGAGTTACTATGAAGCCAAATAGAACAATTCAG  600

seq1  TGAGAGGTTGAGAGGAGCCAAATTGAATGAGTCAGCTTGGAGAGGACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGTTGAGAGGAGCCAAATTGAATGAGTCAGCTTGGAGAGGACTCT  650

seq1  GAGCCAGAACAGCTGAGTTGAACAGGCCAGCCAGAGTTCAGAAATAGCAA  700
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGAACAGCTGAGTTGAACAGGCCAGCCAGAGTTCAGAAATAGCAA  700

seq1  GAAAGAGCTTATTCAGCAGCAAGTCTCAGGGGCTGAAAGGATTCTAGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGCTTATTCAGCAGCAAGTCTCAGGGGCTGAAAGGATTCTAGGTT  750

seq1  TAGATTATA-TTCTATGGAGGCTAGAAGATCCAGGGCTCTATGTCTAGGT  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTATATTTCTATGGAGGCTAGAAGATCCAGGGCTCTATGTCTAGGT  800

seq1  TAG-AAGACAGAGGCAGCAAACTTGCAAGACAACAATTACATATAAT-AA  847
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAGAAAGACAGAGGCAGCAAACTTGCAAGACAACAATTACATATAATAAA  850

seq1  ATAAAAGTTACTTTTACAGATCAGCAAGTAGTTCTGAATGTGTAGGCTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTTACTTTTACAGATCAGCAAGTAGTTCTGAATGTGTAGGCTTA  900

seq1  TATATGCATGCATATGCATGTTAGAACAGCTAATAAAAAAGAAGAGATGC  947
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TATATGCATGCATATGCATGTTAG-ACAGCTAATAAAAAAGAAGAGATGC  949

seq1  ATTTAAATGAGAATAATATAGGAGGGCATAGATGGAGGAATGAGATGAGG  997
      ||||||||||||||||||||||||||||||||||||||||||  ||  ||
seq2  ATTTAAATGAGAATAATATAGGAGGGCATAGATGGAGGAATG-CATTTGG  998

seq1  AAATTATATAATTATAT  1014
      |||||  ||||||||||
seq2  AAATT-CATAATTATAT  1014