BAC Information

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BAC

Clone NameB6Ng01-009K18
Chromosome1 (Build37)
Map Location 167,142,466 - 167,276,617
singlet/doubletdoublet
Overlap geneTiprl, Gpr161, Iqwd1
Upstream geneF5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2
Downstream geneBrp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009K18.bB6Ng01-009K18.g
ACCDH845551DH845552
length1,1401,013
definitionDH845551|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K18, 5' end.DH845552|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(167,142,466 - 167,143,595)(167,275,612 - 167,276,617)
sequence
gaattccataagaaggaagaagaaatcagagcatctctagtttctacaac
aagcattatcagttatgatgttttgttattcataatacattttataattg
tgagaaatgagtaacagaaagcttgcctcgttatgtaagtaaatgtgccc
attgcatagcttccctcatcatccaatcaccaaatgattactaggtattc
ccataggtatgactgtccccataaaccccagctaacaggctgtttttgtt
tctgcactactgggaattgaacctgtgctcttaagcatattcacccttaa
ccgcagagcagcatctccagcctttggttttcttagaaaaagtctcacca
tgtagttcaaactaaagctggaattccacgcttcccagcagtctgtgtgt
tttaaagtactgcttatcctcagctttaggtccccaatgcctactccatt
aggagatagggagcaacactttgttcttcctttgacatagactggtttcc
ttcttacctagtggcccccaggctcactttggggtacaggaaagttttct
ctgttgaccttggctagcctgctgtgggcagccgtatctggttttcagga
tgtggccttctcgacacttgcacctcattcagcaatcgggggaaacccaa
ccttaaatcaatggtcccaagtgaagaacgtcaccagcaccctcccacca
gaggcagcagtcctcagtattctgcatatgcaactatggtccacgctgct
ttccagttcctcatcaagtcagccaagtttggcttccatttccttctttg
gtaggaattgtcctttgcctgtccaggactctccctccactccttcctcc
aggggcaagtaggctttgtcagatgcaattagggatgaaaacaggttttt
gcagcttttccccacaacaccctaaggcattttaaactctttagagcttc
ggaaccttagggtaggttgggcagggctttactctggtctccaagttact
tcctgctttgcctggcctcttacaggactttcgtgagcttcgctttggtt
ctttttcaggcacagacctttgggatctaagagccaaatcttaactgaga
agttagtaagtccctttaaatggagacttgtagtctattc
gaattctccacctgcttgctcctcctatgctgtctcccatagcatcattt
gctatataattagagctcacccagtaaagagtgcgtgcgcctgtgcctgc
tgtggctgcccttgcttcatccttgaggctgctgtagcttgttactgctt
agtgagggaccacttgccatggcctcgggtgtagttcattgcttctaaat
ttagaagtaattaataagttgacttatattttaaaaggagcaagttttaa
gaaattttactaataagaacccaaatcatttacagtctttaaaattagca
atatttggactactttccgtttctgaagaggctaaagtacattgtgcaca
ttgttgaaatgtccagctaacagaatacatgccttagaagtcactcttct
gtcgtttgatcactccaggtccggtctagaagtccagtgtgctgaaaatg
tgcccacaacaatttcttgatgctattttaaaagcccagtcaattaattt
agttagggtagagaaatggtcctcacaataagtatggtaaaagtcaaata
gttaaaacgttaaaacatgtagttagttgaacttcatcttaatttatatg
aaagctatagtagatctcacggttgcattcttgtgagtcaggatcttatg
taccttgaacttgctgtgtattttgaagatggctttttaatttctgatcc
tcctgcccccaactccagtgtgaggttacttactttgactctcagtattc
ttaaaggtttgtttaatattaagcaggtttgcattctggggctgaaacca
acatgaaaaggcaaagccttaacacataggccacaacagtcatatggggt
atttttaactgtgggagtgctcgtctctaaccatagcaagtcttatataa
aaatagctgggaacaggtacaggaattcaaatattttttcctcctacaag
gccagataattaaatattttaggctttgctgtcaggcagtaaagtagaaa
ctactaggaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_167142466_167143595
seq2: B6Ng01-009K18.b_47_1186

seq1  GAATTCCATAAGAAGGAAGAAGAAATCAGAGCATCTCTAGTTTCTACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAGAAGGAAGAAGAAATCAGAGCATCTCTAGTTTCTACAAC  50

seq1  AAGCATTATCAGTTATGATGTTTTGTTATTCATAATACATTTTATAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTATCAGTTATGATGTTTTGTTATTCATAATACATTTTATAATTG  100

seq1  TGAGAAATGAGTAACAGAAAGCTTGCCTCGTTATGTAAGTAAATGTGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATGAGTAACAGAAAGCTTGCCTCGTTATGTAAGTAAATGTGCCC  150

seq1  ATTGCATAGCTTCCCTCATCATCCAATCACCAAATGATTACTAGGTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATAGCTTCCCTCATCATCCAATCACCAAATGATTACTAGGTATTC  200

seq1  CCATAGGTATGACTGTCCCCATAAACCCCAGCTAACAGGCTGTTTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGTATGACTGTCCCCATAAACCCCAGCTAACAGGCTGTTTTTGTT  250

seq1  TCTGCACTACTGGGAATTGAACCTGTGCTCTTAAGCATATTCACCCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACTACTGGGAATTGAACCTGTGCTCTTAAGCATATTCACCCTTAA  300

seq1  CCGCAGAGCAGCATCTCCAGCCTTTGGTTTTCTTAGAAAAAGTCTCACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGAGCAGCATCTCCAGCCTTTGGTTTTCTTAGAAAAAGTCTCACCA  350

seq1  TGTAGTTCAAACTAAAGCTGGAATTCCACGCTTCCCAGCAGTCTGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTCAAACTAAAGCTGGAATTCCACGCTTCCCAGCAGTCTGTGTGT  400

seq1  TTTAAAGTACTGCTTATCCTCAGCTTTAGGTCCCCAATGCCTACTCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTACTGCTTATCCTCAGCTTTAGGTCCCCAATGCCTACTCCATT  450

seq1  AGGAGATAGGGAGCAACACTTTGTTCTTCCTTTGACATAGACTGGTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATAGGGAGCAACACTTTGTTCTTCCTTTGACATAGACTGGTTTCC  500

seq1  TTCTTACCTAGTGGCCCCCAGGCTCACTTTGGGGTACAGGAAAGTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACCTAGTGGCCCCCAGGCTCACTTTGGGGTACAGGAAAGTTTTCT  550

seq1  CTGTTGACCTTGGCTAGCCTGCTGTGGGCAGCCGTATCTGGTTTTCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGACCTTGGCTAGCCTGCTGTGGGCAGCCGTATCTGGTTTTCAGGA  600

seq1  TGTGGCCTTCTCGACACTTGCACCTCATTCAGCAATCGGGGGAAACCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTTCTCGACACTTGCACCTCATTCAGCAATCGGGGGAAACCCAA  650

seq1  CCTTAAATCAATGGTCCCAAGTGAAGAACGTCACCAGCACCCTCCCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAATCAATGGTCCCAAGTGAAGAACGTCACCAGCACCCTCCCACCA  700

seq1  GAGGCAGCAGTCCTCAGTATTCTGCATATGCAACTATGGTCCACGCTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCAGTCCTCAGTATTCTGCATATGCAACTATGGTCCACGCTGCT  750

seq1  TTCCAGTTCCTCATCAAGTCAGCCAAGTTTGGCTTCCA-TTCCTTCTTTG  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCCAGTTCCTCATCAAGTCAGCCAAGTTTGGCTTCCATTTCCTTCTTTG  800

seq1  GTAGGAATTGTCCTTTGCCTGTCCAGGACTCTCCCTCCACTCC-TCCTCC  848
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTAGGAATTGTCCTTTGCCTGTCCAGGACTCTCCCTCCACTCCTTCCTCC  850

seq1  AGGGGCAAGTAGGCTTTGTCAGATGCAA-TAGGGATGAAAACAGGTTTTT  897
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGGGGCAAGTAGGCTTTGTCAGATGCAATTAGGGATGAAAACAGGTTTTT  900

seq1  GCAGC-TTTCCCCACAACACCCTAAGGCA-TTTAAACCCTTCAGAGC-TC  944
      ||||| ||||||||||||||||||||||| ||||||| ||| ||||| ||
seq2  GCAGCTTTTCCCCACAACACCCTAAGGCATTTTAAACTCTTTAGAGCTTC  950

seq1  GGAACC-TAGGGTAGG-TGGGCAGGGCTTTACCCCTGTC-CCCAGTTACT  991
      |||||| ||||||||| ||||||||||||||| |  ||| || |||||||
seq2  GGAACCTTAGGGTAGGTTGGGCAGGGCTTTACTCTGGTCTCCAAGTTACT  1000

seq1  TCCTGC-TTGCCTGGCCTCCTTACCAGGACTTTCGTGAGCTCCGC-TTGG  1039
      |||||| ||||||||||| |||| ||||||||||||||||| ||| ||||
seq2  TCCTGCTTTGCCTGGCCT-CTTA-CAGGACTTTCGTGAGCTTCGCTTTGG  1048

seq1  TTCTTTTCCAGGCACAGACCTTT-GGATCTAAGAGGCAAATCCTTAACTG  1088
      ||||||| ||||||||||||||| ||||||||||| ||||| ||||||||
seq2  TTCTTTTTCAGGCACAGACCTTTGGGATCTAAGAGCCAAAT-CTTAACTG  1097

seq1  AGAAAGTTAGTAAGTCCCCTTAAAT-GAGACTTGTAG-CTATTC  1130
      || ||||||||||||||| |||||| ||||||||||| ||||||
seq2  AG-AAGTTAGTAAGTCCCTTTAAATGGAGACTTGTAGTCTATTC  1140

seq1: chr1_167275612_167276617
seq2: B6Ng01-009K18.g_69_1081 (reverse)

seq1  GGCCTACTAGTAGTTTCTACTTTACTGCCTGGCAGCAAAGCCTAAAATAT  50
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGCCTCCTAGTAGTTTCTACTTTACTGCCTGACAGCAAAGCCTAAAATAT  50

seq1  TT-ATTATCTGGCCTTGTGGGAGAAAAAAATTGTCTGAATTCCTGTACCT  99
      || ||||||||||||||| |||| |||||| | | |||||||||||||||
seq2  TTAATTATCTGGCCTTGTAGGAGGAAAAAA-TATTTGAATTCCTGTACCT  99

seq1  GTT-CCAGCTGTTTTTATAT-AGACTTGCTATGGTTAGAGACGAGCACT-  146
      ||| |||||| ||||||||| |||||||||||||||||||||||||||| 
seq2  GTTCCCAGCTATTTTTATATAAGACTTGCTATGGTTAGAGACGAGCACTC  149

seq1  CCACAGTT-AAAATA-CCCATATGACTGTTGTGGCCTATGTGTCTAAGGC  194
      |||||||| |||||| ||||||||||||||||||||||||||| ||||||
seq2  CCACAGTTAAAAATACCCCATATGACTGTTGTGGCCTATGTGT-TAAGGC  198

seq1  TTTGCCTTTTCATGTTGGTTTCAGCCCCAGAATGCAAACCTGCTTAATAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTTTCATGTTGGTTTCAGCCCCAGAATGCAAACCTGCTTAATAT  248

seq1  TAAACAAACCTTTAAGAATACTGAGAGTC-AAGTAAGTAACCTCACACTG  293
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAAACAAACCTTTAAGAATACTGAGAGTCAAAGTAAGTAACCTCACACTG  298

seq1  GAGTTGGGGGCAGGAGGATCAGAAATT-AAAAGCCATCTTC-AAATACAC  341
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  GAGTTGGGGGCAGGAGGATCAGAAATTAAAAAGCCATCTTCAAAATACAC  348

seq1  AGCAAGTTCAAGGTACATAAGATCCTGACTCACAAGAATGCAACCGTGAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTTCAAGGTACATAAGATCCTGACTCACAAGAATGCAACCGTGAG  398

seq1  ATCTACTATAGCTTTCATATAAATTAAGATGAAGTTCAACTAACTACATG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTATAGCTTTCATATAAATTAAGATGAAGTTCAACTAACTACATG  448

seq1  TTTTAACGTTTTAACTATTTGACTTTTACCATACTTATTGTGAGGACCAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACGTTTTAACTATTTGACTTTTACCATACTTATTGTGAGGACCAT  498

seq1  TTCTCTACCCTAACTAAATTAATTGACTGGGCTTTTAAAATAGCATCAAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTACCCTAACTAAATTAATTGACTGGGCTTTTAAAATAGCATCAAG  548

seq1  AAATTGTTGTGGGCACATTTTCAGCACACTGGACTTCTAGACCGGACCTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTGTGGGCACATTTTCAGCACACTGGACTTCTAGACCGGACCTG  598

seq1  GAGTGATCAAACGACAGAAGAGTGACTTCTAAGGCATGTATTCTGTTAGC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATCAAACGACAGAAGAGTGACTTCTAAGGCATGTATTCTGTTAGC  648

seq1  TGGACATTTCAACAATGTGCACAATGTACTTTAGCCTCTTCAGAAACGGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATTTCAACAATGTGCACAATGTACTTTAGCCTCTTCAGAAACGGA  698

seq1  AAGTAGTCCAAATATTGCTAATTTTAAAGACTGTAAATGATTTGGGTTCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTCCAAATATTGCTAATTTTAAAGACTGTAAATGATTTGGGTTCT  748

seq1  TATTAGTAAAATTTCTTAAAACTTGCTCCTTTTAAAATATAAGTCAACTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTAAAATTTCTTAAAACTTGCTCCTTTTAAAATATAAGTCAACTT  798

seq1  ATTAATTACTTCTAAATTTAGAAGCAATGAACTACACCCGAGGCCATGGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTACTTCTAAATTTAGAAGCAATGAACTACACCCGAGGCCATGGC  848

seq1  AAGTGGTCCCTCACTAAGCAGTAACAAGCTACAGCAGCCTCAAGGATGAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTCCCTCACTAAGCAGTAACAAGCTACAGCAGCCTCAAGGATGAA  898

seq1  GCAAGGGCAGCCACAGCAGGCACAGGCGCACGCACTCTTTACTGGGTGAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGCAGCCACAGCAGGCACAGGCGCACGCACTCTTTACTGGGTGAG  948

seq1  CTCTAATTATATAGCAAATGATGCTATGGGAGACAGCATAGGAGGAGCAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATTATATAGCAAATGATGCTATGGGAGACAGCATAGGAGGAGCAA  998

seq1  GCAGGTGGAGAATTC  1006
      |||||||||||||||
seq2  GCAGGTGGAGAATTC  1013