BAC Information

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BAC

Clone NameB6Ng01-010B06
Chromosome1 (Build37)
Map Location 45,517,721 - 45,636,348
singlet/doubletdoublet
Overlap geneCol5a2, EG666799, LOC631429
Upstream geneTxn-ps1, Gulp1, LOC100041738, LOC100041752, LOC383640, Col3a1
Downstream geneLOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010B06.bB6Ng01-010B06.g
ACCDH845851DH845852
length1,1801,037
definitionDH845851|Mus musculus domesticus DNA, BAC clone: B6Ng01-010B06, 5' end.DH845852|Mus musculus domesticus DNA, BAC clone: B6Ng01-010B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,517,721 - 45,518,924)(45,635,299 - 45,636,348)
sequence
gaattcacaggtcaaaaagagaaatctcaagcaaagcatttcacatagag
aatttaataaggaaaagcaactgcctaatagaaaacacattgctggagtt
gccagcactaaaaggctgtcagctaggcccagtctgtgttttcagattcg
tattccattggggtttgctggactttcgaacttaggaaattattttcaaa
atttgaaattaaagaagatatattaactgtgtggtttttaaaaacttatt
ctaatatctatggaaggggatgagtgtatggctcagttggtagtgtttgc
ctagcaagcatgcggcctgagttttatgattaccccataaagttgtcatg
gagatacttgcctataatatcagtacttggaaggtagaaacttgaggatt
agaagtcaagatcatcatctgatacaaaataattttgaggccaacctaaa
ctaataaaaccttcttagtcaaaaaataaaataaaaataaatataaaaca
aaaagattaaaatatttgaggaaagaacttagaacatttatttgtcaaag
aatcattatattatcagtagaattattatctttaaataaatcattgatgt
ataggaatgactgagagcatgactgtgcatgaaattgggcttcagaaaaa
aaacacacagattatgcctactttgtctaaaaagatgaaaatgtagcaca
tctaaagaaatgtgcattaaggaggagttggcagatatcaatactctagt
gttgtctagtagaagtaagttccttccaagcgatttccaaggttttccta
accatatttgcctcttagacttgggaaaacaaatgggagggaaaagagtg
agattctgtgtatgaatcattaatgtacttaaataacacaaacaaaatat
tttaatgtaattaataattatttattcttggagttaattcaggaatgaca
aatgtttattacataatatttgtgttatgcaacccattgaattcattctt
agtatcatatattaacttgctatttaaaaaaaaaagaagaaaactgctag
agtacaaacacatgatcaagcaacttcatgtccaaaagcgagtagcgcat
tccactctatttattgatattgtaatcatggctagttcgagtacatagtg
aagtttctaccacatcaatgtccgaaaaac
gaattcatcttcttcgtgaacccggccaagggcgtctagggccccagagg
actctctccgctgcaggacccctagcacacccaggacctcgtgatcacct
gggagcacatgggcaacagaagcaacagagcttcctggacagggtcccat
caggccttcatcctcagccaagaggcagagctgagacccagacacctggg
caccttccttgccagaggagagttggcctacaaggagggctctgacccca
ggactcaggaggtggattagagctccagacttctggacatctgctttgca
agaggagagcttgcctgcagagtgctcttaccactggaactcaggtgaga
gttagactcccaggagtgctgacagaggctaacagaatcacaggaggttc
aagctccagccagagacagcatgaatattaacaccagatatttccagatg
gccaaaggcaaaggtaagattcttactaacagaaaccaagaacactgggc
atcatcagaacccagtacatccaccacagccagtcctggataccccaaca
tacccatgattccttaataactccagaatggttgacatagaaaaagcact
cttcatgcacagtggcacataaccctccttgttgtagatacattaagttt
aatccccgcctagtctatagtgctgcctcagccagagagtccatattaca
tcccaggtgtgagatgaacttttctaggcattggacgtcttcatctatgt
ctgcctttaggtactataatttttttcctgtaaggtcagtgaagctatcc
cagtgcctgctctggctaatcctgcccctaggattatggctagggttaat
gagatgggttccctttttgcctaatgaagtctccttcaatgtgtctacca
gagtctcaccagtgttttcttctgaatatagttatatgggtatactggac
taggatacagaacttcttttggggtaaaggattagaccctcatggggtca
gactgtgacagctgaccatgcttgtttgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_45517721_45518924
seq2: B6Ng01-010B06.b_34_1213

seq1  GAATTCACAGGTCAAAAAGAGAAATCTCAAGCAAAGCATTTCACATAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGTCAAAAAGAGAAATCTCAAGCAAAGCATTTCACATAGAG  50

seq1  AATTTAATAAGGAAAAGCAACTGCCTAATAGAAAACACATTGCTGGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATAAGGAAAAGCAACTGCCTAATAGAAAACACATTGCTGGAGTT  100

seq1  GCCAGCACTAAAAGGCTGTCAGCTAGGCCCAGTCTGTGTTTTCAGATTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCACTAAAAGGCTGTCAGCTAGGCCCAGTCTGTGTTTTCAGATTCG  150

seq1  TATTCCATTGGGGTTTGCTGGACTTTCGAACTTAGGAAATTATTTTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCATTGGGGTTTGCTGGACTTTCGAACTTAGGAAATTATTTTCAAA  200

seq1  ATTTGAAATTAAAGAAGATATATTAACTGTGTGGTTTTTAAAAACTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAATTAAAGAAGATATATTAACTGTGTGGTTTTTAAAAACTTATT  250

seq1  CTAATATCTATGGAAGGGGATGAGTGTATGGCTCAGTTGGTAGTGTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATCTATGGAAGGGGATGAGTGTATGGCTCAGTTGGTAGTGTTTGC  300

seq1  CTAGCAAGCATGCGGCCTGAGTTTTATGATTACCCCATAAAGTTGTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAGCATGCGGCCTGAGTTTTATGATTACCCCATAAAGTTGTCATG  350

seq1  GAGATACTTGCCTATAATATCAGTACTTGGAAGGTAGAAACTTGAGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACTTGCCTATAATATCAGTACTTGGAAGGTAGAAACTTGAGGATT  400

seq1  AGAAGTCAAGATCATCATCTGATACAAAATAATTTTGAGGCCAACCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCAAGATCATCATCTGATACAAAATAATTTTGAGGCCAACCTAAA  450

seq1  CTAATAAAACCTTCTTAGTCAAAAAATAAAATAAAAATAAATATAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAAACCTTCTTAGTCAAAAAATAAAATAAAAATAAATATAAAACA  500

seq1  AAAAGATTAAAATATTTGAGGAAAGAACTTAGAACATTTATTTGTCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTAAAATATTTGAGGAAAGAACTTAGAACATTTATTTGTCAAAG  550

seq1  AATCATTATATTATCAGTAGAATTATTATCTTTAAATAAATCATTGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTATATTATCAGTAGAATTATTATCTTTAAATAAATCATTGATGT  600

seq1  ATAGGAATGACTGAGAGCATGACTGTGCATGAAATTGGGCTTCAGAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAATGACTGAGAGCATGACTGTGCATGAAATTGGGCTTCAGAAAAA  650

seq1  AAACACACAGATTATGCCTACTTTGTCTAAAAAGATGAAAATGTAGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACAGATTATGCCTACTTTGTCTAAAAAGATGAAAATGTAGCACA  700

seq1  TCTAAAGAAATGTGCATTAAGGAGGAGTTGGCAGATATCAATACTCTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGAAATGTGCATTAAGGAGGAGTTGGCAGATATCAATACTCTAGT  750

seq1  GTTGTCTAGTAGAAGTAAGTTCCTTCCAAGCGATTTCCAAGGTTTTCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTAGTAGAAGTAAGTTCCTTCCAAGCGATTTCCAAGGTTTTCCTA  800

seq1  ACCATATTTGCCTCTTAGACTTGGGAAAACAAATGGGAGGGAAAAGAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATTTGCCTCTTAGACTTGGGAAAACAAATGGGAGGGAAAAGAGTG  850

seq1  AGATTCTGTGTATGAATCAATAAATGTACTTAAATAACACAAACAAAATA  900
      |||||||||||||||||| || ||||||||||||||||||||||||||| 
seq2  AGATTCTGTGTATGAATC-ATTAATGTACTTAAATAACACAAACAAAAT-  898

seq1  ATTTTAATGTAATTAATAATTATTTATCCTT-GAGTTAATTCAGGGAATG  949
      ||||||||||||||||||||||||||| ||| ||||||||||| ||||||
seq2  ATTTTAATGTAATTAATAATTATTTATTCTTGGAGTTAATTCA-GGAATG  947

seq1  ACAAATGTTTATTACATAATATTGGTGTTATGCAACCCATTGAAATTCAT  999
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  ACAAATGTTTATTACATAATATTTGTGTTATGCAACCCATTG-AATTCAT  996

seq1  TCTTAGCTATCATATATTAACATGTCTATTTAAAAAAAAAAGAAAGAAAA  1049
      |||||| |||||||||||||| || |||||||||||||||||||   |||
seq2  TCTTAG-TATCATATATTAACTTG-CTATTTAAAAAAAAAAGAA--GAAA  1042

seq1  ACTGCTAGAAGTACAAACACATGATCAAGCAACCTCATGGTCCCCAAGAA  1099
      |||||||| |||||||||||||||||||||||| |||| ||||   | ||
seq2  ACTGCTAG-AGTACAAACACATGATCAAGCAACTTCAT-GTCC---AAAA  1087

seq1  GCCAGAGTAGCCACATTTCACATCTATTTTAATGATA-TGTAATCATGGC  1148
      ||  |||||| | |||| ||| |||| |||| ||||| ||||||||||| 
seq2  GC--GAGTAG-CGCATTCCAC-TCTA-TTTATTGATATTGTAATCATGG-  1131

seq1  CTAGTTTCTAGAGACATAAGTAGAAGTTTCCTACCACATCAACATTCCAG  1198
      |||| ||| ||  |||| ||| ||||||| |||||||||||  ||  | |
seq2  CTAG-TTCGAG-TACAT-AGT-GAAGTTT-CTACCACATCA--ATGTCCG  1174

seq1  AAAAAC  1204
      ||||||
seq2  AAAAAC  1180

seq1: chr1_45635299_45636348
seq2: B6Ng01-010B06.g_65_1101 (reverse)

seq1  CCCCCCCCCCCAACAAGCATGGTCAGCTTGTTCAACAGTTCTGACCCCAT  50
      |||||||||| |||||||||||||||| |||   |||| |||||||||||
seq2  CCCCCCCCCCAAACAAGCATGGTCAGC-TGT--CACAG-TCTGACCCCAT  46

seq1  GGAGGGTCTTAATTCCTTTACCCC-AAAGGAGTTCTGTATTCTAGTCCAG  99
       ||||||||  | ||||||||||| |||| |||||||||| |||||||||
seq2  -GAGGGTCT--AATCCTTTACCCCAAAAGAAGTTCTGTATCCTAGTCCAG  93

seq1  TTATTACCCCATATAACCTATTATTCAGAAG-AAACACTGGTGAGAACTC  148
       |||   ||||||||| ||| |||||||||| ||||||||||||| ||||
seq2  -TAT--ACCCATATAA-CTA-TATTCAGAAGAAAACACTGGTGAG-ACTC  137

seq1  TGGTAGAACACATTGAAGGAGACTTCATTAGGCAAAAAAGGGAACCCATC  198
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGTAG-ACACATTGAAGGAGACTTCATTAGGC-AAAAAGGGAACCCATC  185

seq1  TCATTAACCCTAGCCATAATCCTAGGGGCAGGATTAGCCAGAGCAGGCAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAACCCTAGCCATAATCCTAGGGGCAGGATTAGCCAGAGCAGGCAC  235

seq1  TGGGATAGCTTCACTGACCTTACAGGAAAAAAATTATAGTACCTAAAGGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAGCTTCACTGACCTTACAGGAAAAAAATTATAGTACCTAAAGGC  285

seq1  AGACATAGATGAAGACGTCCAATGCCTAGAAAAGTTCATCTCACACCTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGATGAAGACGTCCAATGCCTAGAAAAGTTCATCTCACACCTGG  335

seq1  GATGTAATATGGACTCTCTGGCTGAGGCAGCACTATAGACTAGGCGGGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAATATGGACTCTCTGGCTGAGGCAGCACTATAGACTAGGCGGGGA  385

seq1  TTAAACTTAATGTATCTACAACAAGGAGGGTTATGTGCCACTGTGCATGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTAATGTATCTACAACAAGGAGGGTTATGTGCCACTGTGCATGA  435

seq1  AGAGTGCTTTTTCTATGTCAACCATTCTGGAGTTATTAAGGAATCATGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCTTTTTCTATGTCAACCATTCTGGAGTTATTAAGGAATCATGGG  485

seq1  TATGTTGGGGTATCCAGGACTGGCTGTGGTGGATGTACTGGGTTCTGATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGGGGTATCCAGGACTGGCTGTGGTGGATGTACTGGGTTCTGATG  535

seq1  ATGCCCAGTGTTCTTGGTTTCTGTTAGTAAGAATCTTACCTTTGCCTTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAGTGTTCTTGGTTTCTGTTAGTAAGAATCTTACCTTTGCCTTTG  585

seq1  GCCATCTGGAAATATCTGGTGTTAATATTCATGCTGTCTCTGGCTGGAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTGGAAATATCTGGTGTTAATATTCATGCTGTCTCTGGCTGGAGC  635

seq1  TTGAACCTCCTGTGATTCTGTTAGCCTCTGTCAGCACTCCTGGGAGTCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCTCCTGTGATTCTGTTAGCCTCTGTCAGCACTCCTGGGAGTCTA  685

seq1  ACTCTCACCTGAGTTCCAGTGGTAAGAGCACTCTGCAGGCAAGCTCTCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCACCTGAGTTCCAGTGGTAAGAGCACTCTGCAGGCAAGCTCTCCT  735

seq1  CTTGCAAAGCAGATGTCCAGAAGTCTGGAGCTCTAATCCACCTCCTGAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAAGCAGATGTCCAGAAGTCTGGAGCTCTAATCCACCTCCTGAGT  785

seq1  CCTGGGGTCAGAGCCCTCCTTGTAGGCCAACTCTCCTCTGGCAAGGAAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGTCAGAGCCCTCCTTGTAGGCCAACTCTCCTCTGGCAAGGAAGG  835

seq1  TGCCCAGGTGTCTGGGTCTCAGCTCTGCCTCTTGGCTGAGGATGAAGGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGGTGTCTGGGTCTCAGCTCTGCCTCTTGGCTGAGGATGAAGGCC  885

seq1  TGATGGGACCCTGTCCAGGAAGCTCTGTTGCTTCTGTTGCCCATGTGCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGACCCTGTCCAGGAAGCTCTGTTGCTTCTGTTGCCCATGTGCTC  935

seq1  CCAGGTGATCACGAGGTCCTGGGTGTGCTAGGGGTCCTGCAGCGGAGAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGATCACGAGGTCCTGGGTGTGCTAGGGGTCCTGCAGCGGAGAGA  985

seq1  GTCCTCTGGGGCCCTAGACGCCCTTGGCCGGGTTCACGAAGAAGATGAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGGGGCCCTAGACGCCCTTGGCCGGGTTCACGAAGAAGATGAAT  1035

seq1  TC  1050
      ||
seq2  TC  1037