BAC Information

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BAC

Clone NameB6Ng01-010C20
Chromosome1 (Build37)
Map Location 65,041,599 - 65,205,466
singlet/doubletdoublet
Overlap gene4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1
Upstream geneKlf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141
Downstream genePip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010C20.bB6Ng01-010C20.g
ACCDH845921DH845922
length1,013941
definitionDH845921|Mus musculus domesticus DNA, BAC clone: B6Ng01-010C20, 5' end.DH845922|Mus musculus domesticus DNA, BAC clone: B6Ng01-010C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,204,464 - 65,205,466)(65,041,599 - 65,042,540)
sequence
gaattccaagtctagaataaatgcagactggaggattctgctctttgatt
tctcttctcctgtgacccagcctaagtattatcctaccccaagcagtaca
tttcacccatgggcaataatgggagctgtaccgtttggatttctgctgac
ctgctgcatttcttttatataaatgtgacttttttttcccagaagttgat
attaaacactattccagtctagtccttctaaactgttaattttaattaaa
atgaagtactaatgactcttctttgaagtgtttattatgtgtttttattt
aaaaagtgtttttcatttcttttcctattactgtaataagatacctagat
agaagcattttaaaggagaaagggttagttttggcaacagttcaaggtac
actcccagtgtagctgggaggtcagggtagcaggagcttgaagcagctgg
tcctgaagtagagaacaaggaatgcatgctagtgctcagcctagaaacca
agatggcgcttcccctagcccttaacagaaatcagagaatccctagtgta
tatacttagaggccatatcccaggtgattctgggctctgtcaagttgaaa
agtaacacagacacagacactagattatatcctagccatgggaatttgat
ttgaaaatattttttctcttaagaagtctactgtgagacagctgtggtgc
gtatctgtgatctcagcacttgggaggcagaggcaggcagatctctgagt
tccaagccagcctggtctacagagggagttccaggatgcccaaggctaca
cagaaaaaccctgtctccaaaaacaccaaacaaacaaaacgttgcttgag
gagtgaggtacatgaattaacagacagtgaggggaatctgctctgggagc
acagagtagtgctgcaagatcttgcttccagtgtaaggaaaaggacgacc
ttatggcctataaactatcagcgacactgattaattaagaatgtaagctt
gcctggaagtaaa
gaattccaaactagtagcctccatgaaaattgttaaacttcattgcttgt
agaaagaattatatttcccccctgggttttagctgaattcatcacccccc
atagttcagaaaaaaatattgacttctagagaaatcataggaaagcattc
ccacatggagatgtactgaacccaccaaccacaccccagctcctgtgtca
gcatgggtgtcaaagtgtatgacatggcgttgaagaagacagggtgttgt
gtctggggtggggtggtacatttcatctgagttgaagcttgatggcatgc
aaccgaagagcactgagttacaagtctattccttctcatcaaagacatct
agaagctgatacagtccaccctgcctgccatcacatgagtcacttacagt
gcattccattcctgtcttccttctttccactcttgccaccatgtcaggga
cccaggtcctccaggagcgccagatgtttttttgaggtaggagaaagtaa
aacagaaggaatgttgttcacattgctgcaaagatgcatctgagcaactc
cactgatgttttcatttgcaaccagacgacacataatcttatcctgctgc
tggtgaggctggaaactgaaagtcattgagggcacaatgtccggccagtg
agtgaggatcctgtgagtgagtgacctaagtgtccctccccatgcagtga
caaagcacctggtacttgaatgactaccagaatgtttcgggcaaggaaaa
tagcagataaaaatatctgtagattttcataacaagaattttaaaaaggt
ctggagatgtagctcaagggttaaacaactgtccaacatacatgagaccc
tgatacacacacacacacacaaacagacacacatacatatacacatatat
acacatacttactatatatagacaaagaagcactcatacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_65204464_65205466
seq2: B6Ng01-010C20.b_43_1037 (reverse)

seq1  TACATTCTTTAGTTTATGCAGTGTCTGCTGATAGTTTATTAGGCCCTTAG  50
      ||||||||| |  |||  ||||||| |||||||||||| |||||| | ||
seq2  TACATTCTTAA--TTAATCAGTGTC-GCTGATAGTTTA-TAGGCCATAAG  46

seq1  GTCTGTCCTTTTTCCTTACACTGGAAGCAGGATCTTGCAGCACTACTCTG  100
      ||| |||| |||||||||||||||||||| ||||||||||||||||||||
seq2  GTC-GTCC-TTTTCCTTACACTGGAAGCAAGATCTTGCAGCACTACTCTG  94

seq1  TGCTTCCAGAGCAGATTCCCCTCACTGTCTGTTAATTCATGTACCTCACT  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCAGAGCAGATTCCCCTCACTGTCTGTTAATTCATGTACCTCACT  144

seq1  CCTCAGCAAACGTTTTTGTTTGTTTTGGTGTTTTTGGAGACAGGGTTTTT  200
      |||||   |||| ||||||||| |||||||||||||||||||||||||||
seq2  CCTCAAGCAACG-TTTTGTTTG-TTTGGTGTTTTTGGAGACAGGGTTTTT  192

seq1  CTGTGTAGCCTTGGGCATCCTGGAACTCCCTCTGTAGACCAGGCTGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGCCTTGGGCATCCTGGAACTCCCTCTGTAGACCAGGCTGGCTT  242

seq1  GGAACTCAGAGATCTGCCTGCCTCTGCCTCCCAAGTGCTGAGATCACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCAGAGATCTGCCTGCCTCTGCCTCCCAAGTGCTGAGATCACAGA  292

seq1  TACGCACCACAGCTGTCTCACAGTAGACTTCTTAAGAGAAAAAATATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCACCACAGCTGTCTCACAGTAGACTTCTTAAGAGAAAAAATATTTT  342

seq1  CAAATCAAATTCCCATGGCTAGGATATAATCTAGTGTCTGTGTCTGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAAATTCCCATGGCTAGGATATAATCTAGTGTCTGTGTCTGTGTT  392

seq1  ACTTTTCAACTTGACAGAGCCCAGAATCACCTGGGATATGGCCTCTAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCAACTTGACAGAGCCCAGAATCACCTGGGATATGGCCTCTAAGT  442

seq1  ATATACACTAGGGATTCTCTGATTTCTGTTAAGGGCTAGGGGAAGCGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACTAGGGATTCTCTGATTTCTGTTAAGGGCTAGGGGAAGCGCCA  492

seq1  TCTTGGTTTCTAGGCTGAGCACTAGCATGCATTCCTTGTTCTCTACTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTTCTAGGCTGAGCACTAGCATGCATTCCTTGTTCTCTACTTCA  542

seq1  GGACCAGCTGCTTCAAGCTCCTGCTACCCTGACCTCCCAGCTACACTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGCTGCTTCAAGCTCCTGCTACCCTGACCTCCCAGCTACACTGGG  592

seq1  AGTGTACCTTGAACTGTTGCCAAAACTAACCCTTTCTCCTTTAAAATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACCTTGAACTGTTGCCAAAACTAACCCTTTCTCCTTTAAAATGCT  642

seq1  TCTATCTAGGTATCTTATTACAGTAATAGGAAAAGAAATGAAAAACACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTAGGTATCTTATTACAGTAATAGGAAAAGAAATGAAAAACACTT  692

seq1  TTTAAATAAAAACACATAATAAACACTTCAAAGAAGAGTCATTAGTACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAAAAACACATAATAAACACTTCAAAGAAGAGTCATTAGTACTT  742

seq1  CATTTTAATTAAAATTAACAGTTTAGAAGGACTAGACTGGAATAGTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAATTAAAATTAACAGTTTAGAAGGACTAGACTGGAATAGTGTTT  792

seq1  AATATCAACTTCTGGGAAAAAAAAGTCACATTTATATAAAAGAAATGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAACTTCTGGGAAAAAAAAGTCACATTTATATAAAAGAAATGCAG  842

seq1  CAGGTCAGCAGAAATCCAAACGGTACAGCTCCCATTATTGCCCATGGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAGCAGAAATCCAAACGGTACAGCTCCCATTATTGCCCATGGGTG  892

seq1  AAATGTACTGCTTGGGGTAGGATAATACTTAGGCTGGGTCACAGGAGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACTGCTTGGGGTAGGATAATACTTAGGCTGGGTCACAGGAGAAG  942

seq1  AGAAATCAAAGAGCAGAATCCTCCAGTCTGCATTTATTCTAGACTTGGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCAAAGAGCAGAATCCTCCAGTCTGCATTTATTCTAGACTTGGAA  992

seq1  TTC  1003
      |||
seq2  TTC  995

seq1: chr1_65041599_65042540
seq2: B6Ng01-010C20.g_64_1004

seq1  GAATTCCAAACTAGTAGCCTCCATGAAAATTGTTAAACTTCATTGCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACTAGTAGCCTCCATGAAAATTGTTAAACTTCATTGCTTGT  50

seq1  AGAAAGAATTATATTTCCCCCCTGGGTTTTAGCTGAATTCATCACCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAATTATATTTCCCCCCTGGGTTTTAGCTGAATTCATCACCCCCC  100

seq1  ATAGTTCAGAAAAAAATATTGACTTCTAGAGAAATCATAGGAAAGCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCAGAAAAAAATATTGACTTCTAGAGAAATCATAGGAAAGCATTC  150

seq1  CCACATGGAGATGTACTGAACCCACCAACCACACCCCAGCTCCTGTGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGAGATGTACTGAACCCACCAACCACACCCCAGCTCCTGTGTCA  200

seq1  GCATGGGTGTCAAAGTGTATGACATGGCGTTGAAGAAGACAGGGTGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGTGTCAAAGTGTATGACATGGCGTTGAAGAAGACAGGGTGTTGT  250

seq1  GTCTGGGGTGGGGTGGTACATTTCATCTGAGTTGAAGCTTGATGGCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGGTGGGGTGGTACATTTCATCTGAGTTGAAGCTTGATGGCATGC  300

seq1  AACCGAAGAGCACTGAGTTACAAGTCTATTCCTTCTCATCAAAGACATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAAGAGCACTGAGTTACAAGTCTATTCCTTCTCATCAAAGACATCT  350

seq1  AGAAGCTGATACAGTCCACCCTGCCTGCCATCACATGAGTCACTTACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGATACAGTCCACCCTGCCTGCCATCACATGAGTCACTTACAGT  400

seq1  GCATTCCATTCCTGTCTTCCTTCTTTCCACTCTTGCCACCATGTCAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCATTCCTGTCTTCCTTCTTTCCACTCTTGCCACCATGTCAGGGA  450

seq1  CCCAGGTCCTCCAGGAGCGCCAGATGTTTTTTTGAGGTAGGAGAAAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTCCTCCAGGAGCGCCAGATGTTTTTTTGAGGTAGGAGAAAGTAA  500

seq1  AACAGAAGGAATGTTGTTCACATTGCTGCAAAGATGCATCTGAGCAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGGAATGTTGTTCACATTGCTGCAAAGATGCATCTGAGCAACTC  550

seq1  CACTGATGTTTTCATTTGCAACCAGACGACACATAATCTTATCCTGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATGTTTTCATTTGCAACCAGACGACACATAATCTTATCCTGCTGC  600

seq1  TGGTGAGGCTGGAAACTGAAAGTCATTGAGGGCACAATGTCCGGCCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGGCTGGAAACTGAAAGTCATTGAGGGCACAATGTCCGGCCAGTG  650

seq1  AGTGAGGATCCTGTGAGTGAGTGACCTAAGTGTCCCTCCCCATGCAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGATCCTGTGAGTGAGTGACCTAAGTGTCCCTCCCCATGCAGTGA  700

seq1  CAAAGCACCTGGTACTTGAATGACTACCAGAATGTTTCGGGCAAGGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCACCTGGTACTTGAATGACTACCAGAATGTTTCGGGCAAGGAAAA  750

seq1  TAGCAGATAAAAATATCTGTAGA-TTTCATAACAAGAATTTTAAAAAGGT  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAGCAGATAAAAATATCTGTAGATTTTCATAACAAGAATTTTAAAAAGGT  800

seq1  CTGGAGATGTAGCTCAAGGGTAAAACAACTGTCCAACATACATGAGACCC  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGGAGATGTAGCTCAAGGGTTAAACAACTGTCCAACATACATGAGACCC  850

seq1  TTGATACACACACACACACACAAACAGACACACATACATATACACATATA  899
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGATACACACACACACACACAAACAGACACACATACATATACACATATA  899

seq1  TACACATACTTACATATATATAGACAAAGAAACACCCATACAC  942
      ||||||||||||| ||||||||||||||||| ||| |||||||
seq2  TACACATACTTAC-TATATATAGACAAAGAAGCACTCATACAC  941