BAC Information

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BAC

Clone NameB6Ng01-011E05
Chromosome1 (Build37)
Map Location 83,769,715 - 83,958,457
singlet/doubletdoublet
Overlap genenone
Upstream geneHrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011E05.bB6Ng01-011E05.g
ACCDH846693DH846694
length1,1481,119
definitionDH846693|Mus musculus domesticus DNA, BAC clone: B6Ng01-011E05, 5' end.DH846694|Mus musculus domesticus DNA, BAC clone: B6Ng01-011E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,769,715 - 83,770,850)(83,957,343 - 83,958,457)
sequence
gaattcacaaaatgtctgcatattacttcatcctgtcatgtgttttaaat
acacacaattctgtttggcaattctatccccgtaatcccagtaccttata
aaaaattaaaatgtactgaaagaagttggtatgaactatccctatacaga
caacaatcatactttgaaaataaaagtcaatagtacttcaaaaatgctta
gcaacatacagagcatctttgcagtccataaagtgaggttcttttctagt
attatactttgaaaatgtacattttcttgggcttattcactattccttgt
tctttctctagtttctcctccttccctagagttttcctgtcaattatgat
gttttcaaaagaggtactgatagaattgagtttggtcgaaatgttaaata
tacacccccacacaggtatgcactcagacacagatatgcacccatatagg
caacacacacacacacagaaacacaaacttaccacacatacatacgcgca
cacacacacatgcaaatgcacatgcctacacacacacatacacacaggca
ttcactcacatagagagatgtttcccttcttatctatataggacatattc
ctagaggctcagtggacaccaaagccttcaatactgctgaaccctctatg
tactgtttgtctaatacatatattccatgtgatattttttgtctaagcta
gtatggataacaatagctaataagagaattattataaaaacataaaggtc
atttaaaattcataaattgtttatatctgggatttttctaagtactattt
tcagagcacagtcttaccatgggttaaagaaaatcacaatacacacacac
acacacacacacacacacacacacacacacacacacacacaccacagata
atagaaaactatgcagtttagaggtttagagtgcattctatttattctta
ggaatgctttgattttcatgggggacctcattccccctctccaatctaag
catggagtaacatcatttcatttctgagctgctctgctgagacatcatca
ggacaacactcattgaagtcaggcaggcaacctttaatggaggcatcaca
ctaagaagaaaagaaatctctctatatattctatactaaacatgagaa
gaattctagttccagaagtaaatctctgagagagacacaaagttttaaat
tttagtggccaaattctcctttgccggtgttttttaaattaattaattaa
ttaattaattatttcagtccgcatcactgctgtctcagcatgaagaaaac
aatgggctggttcggcagcagaactaacagagagtactcacaggtaggta
tttataccaactggctgaggaaagagaattggaagtcagatattatttat
cagagggtagagccgagacggaagccttggccaagttcctctctcttcag
atatggtggaactctacatttaagagagccataggaccttagtactttaa
ctcgagacttacctttcatgttcagtgaaaataattgggaaacaccgaga
aagcatatgacaattcagtaaccactttgtttaaaaaaggcaaatataga
tcttgggactctttgcctctcgactgtgcccacttgacatttgggagtct
ggtaaaagctttcaaaaaggcaaggaaagaagtctgttcaggtgatgttt
taaaaaagctttaatctatatgttcacccatgtcttcagttctggtgttt
ccttgactattactgccaacacttctctagtctctgccactgccacccct
gtaactcttgcttgtcttgctctcagggctcacaggcttgcccagagcaa
gaaaacatcttcttgtaaatagctcagtgaagtcaaccagtttccattgc
agtttatgatttgtagggccttgggttttctattgctatgataggatatc
atgactcaaagcaatttggaaaagaaaagagttcattttatcttatactt
acatgtaatggtccattactgagggaaggcagggcaggattccaagcagg
gcagggacatagaggcaggagctgaagcagagccatagaggagtgctgct
acagacctgctcagcatatcttgttcatgtgctttttatatatcctcagg
cctccctggcttctggaggagcatctgtcactggtgggctgggcctgccc
aattcaatcatcaatcaagaaaatggttctacacacttgacttccgacaa
gtgcgatagtctatttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_83769715_83770850
seq2: B6Ng01-011E05.b_42_1189

seq1  GAATTCACAAAATGTCTGCATATTACTTCATCCTGTCATGTGTTTTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAAATGTCTGCATATTACTTCATCCTGTCATGTGTTTTAAAT  50

seq1  ACACACAATTCTGTTTGGCAATTCTATCCCCGTAATCCCAGTACCTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAATTCTGTTTGGCAATTCTATCCCCGTAATCCCAGTACCTTATA  100

seq1  AAAAATTAAAATGTACTGAAAGAAGTTGGTATGAACTATCCCTATACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAAAATGTACTGAAAGAAGTTGGTATGAACTATCCCTATACAGA  150

seq1  CAACAATCATACTTTGAAAATAAAAGTCAATAGTACTTCAAAAATGCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATCATACTTTGAAAATAAAAGTCAATAGTACTTCAAAAATGCTTA  200

seq1  GCAACATACAGAGCATCTTTGCAGTCCATAAAGTGAGGTTCTTTTCTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATACAGAGCATCTTTGCAGTCCATAAAGTGAGGTTCTTTTCTAGT  250

seq1  ATTATACTTTGAAAATGTACATTTTCTTGGGCTTATTCACTATTCCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACTTTGAAAATGTACATTTTCTTGGGCTTATTCACTATTCCTTGT  300

seq1  TCTTTCTCTAGTTTCTCCTCCTTCCCTAGAGTTTTCCTGTCAATTATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTAGTTTCTCCTCCTTCCCTAGAGTTTTCCTGTCAATTATGAT  350

seq1  GTTTTCAAAAGAGGTACTGATAGAATTGAGTTTGGTCGAAATGTTAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAAAAGAGGTACTGATAGAATTGAGTTTGGTCGAAATGTTAAATA  400

seq1  TACACCCCCACACAGGTATGCACTCAGACACAGATATGCACCCATATAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCCCACACAGGTATGCACTCAGACACAGATATGCACCCATATAGG  450

seq1  CAACACACACACACACAGAAACACAAACTTACCACACATACATACGCGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACACACACACACAGAAACACAAACTTACCACACATACATACGCGCA  500

seq1  CACACACACATGCAAATGCACATGCCTACACACACACATACACACAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATGCAAATGCACATGCCTACACACACACATACACACAGGCA  550

seq1  TTCACTCACATAGAGAGATGTTTCCCTTCTTATCTATATAGGACATATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCACATAGAGAGATGTTTCCCTTCTTATCTATATAGGACATATTC  600

seq1  CTAGAGGCTCAGTGGACACCAAAGCCTTCAATACTGCTGAACCCTCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGCTCAGTGGACACCAAAGCCTTCAATACTGCTGAACCCTCTATG  650

seq1  TACTGTTTGTCTAATACATATATTCCATGTGATATTTTTTGTCTAAGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTGTCTAATACATATATTCCATGTGATATTTTTTGTCTAAGCTA  700

seq1  GTATGGATAACAATAGCTAATAAGAGAATTATTATAAAAACATAAAGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGATAACAATAGCTAATAAGAGAATTATTATAAAAACATAAAGGTC  750

seq1  ATTTAAAATTCATAAATTGTTTATATCTGGGA-TTTTCTAAGTACTATTT  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTTAAAATTCATAAATTGTTTATATCTGGGATTTTTCTAAGTACTATTT  800

seq1  TCAGAGCACAGTC-TACCATGGGTTAAAG-AAATCACAAATACACACACA  847
      ||||||||||||| ||||||||||||||| ||||||| ||||||||||||
seq2  TCAGAGCACAGTCTTACCATGGGTTAAAGAAAATCAC-AATACACACACA  849

seq1  CACACACACACACACACACACACACACACACACACACACACACCACAGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACCACAGAT  899

seq1  AATAGGAAACTATTGCAGTTTAGAGGTTTAGAGTGCATTCTATTTATTCT  947
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAACTA-TGCAGTTTAGAGGTTTAGAGTGCATTCTATTTATTCT  948

seq1  TAGGAATGCTTTGATTTTCATGGGGGA-CTCAATCCCCC-CCCCAATCTA  995
      ||||||||||||||||||||||||||| |||| |||||| | ||||||||
seq2  TAGGAATGCTTTGATTTTCATGGGGGACCTCATTCCCCCTCTCCAATCTA  998

seq1  AGCATGGAGT-ACATCATTTCATTTCCTGAGCTGCCCTGCTGAG-CATCA  1043
      |||||||||| |||||||||||||| ||||||||| |||||||| |||||
seq2  AGCATGGAGTAACATCATTTCATTT-CTGAGCTGCTCTGCTGAGACATCA  1047

seq1  TCAGGACAACACTCCATGGAAGTCAGGCAGGC-AGCTTCAAT-GAGGCA-  1090
      ||||||||||||| ||| |||||||||||||| | ||| ||| |||||| 
seq2  TCAGGACAACACT-CATTGAAGTCAGGCAGGCAACCTTTAATGGAGGCAT  1096

seq1  CACACTCAAGAAGAA---GAATCTC---ATAT-TTCCATACTAAACATGA  1133
      |||||| ||||||||    ||||||   |||| ||| |||||||||||||
seq2  CACACT-AAGAAGAAAAGAAATCTCTCTATATATTCTATACTAAACATGA  1145

seq1  GAA  1136
      |||
seq2  GAA  1148

seq1: chr1_83957343_83958457
seq2: B6Ng01-011E05.g_65_1183 (reverse)

seq1  AAAAAAT-GACTATCACA-TTGTCCTGAAGTCAAGTGTGTAGAA-CATTA  47
      ||||||| ||||||| || |||| | |||||||||||||||||| |||| 
seq2  AAAAAATAGACTATCGCACTTGT-CGGAAGTCAAGTGTGTAGAACCATTT  49

seq1  TCTTGATTGATGATTGATTTGGGCAGGCCCAGCCCA-CAGTGACAG-TGC  95
      ||||||||||||||||| |||||||||||||||||| ||||||||| |||
seq2  TCTTGATTGATGATTGAATTGGGCAGGCCCAGCCCACCAGTGACAGATGC  99

seq1  TCCTCCAGA--GCAGGTGGGCCTGA-GATATATAAGAAAGCACACTGAAC  142
      |||||||||   ||||  ||||||| ||||||||| |||||||| |||||
seq2  TCCTCCAGAAGCCAGGGAGGCCTGAGGATATATAA-AAAGCACA-TGAAC  147

seq1  AAGATATGCTGAGCAGGTCTGTAAGCAGCACTCCTCTATGGCTTCTGCTT  192
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  AAGATATGCTGAGCAGGTCTGT-AGCAGCACTCCTCTATGGC-TCTGCTT  195

seq1  CAGCTCCTGCCTCTATGTCCCTGCCCTGCTTGGATTCCTGCCCTGCCTTC  242
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAGCTCCTGCCTCTATGTCCCTGCCCTGCTTGGAATCCTGCCCTGCCTTC  245

seq1  CCTCAGTAATGGACCATTACATGTAAGTATAAGATGAAATGAACTCTTTT  292
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCTCAGTAATGGACCATTACATGTAAGTATAAGATAAAATGAACTCTTTT  295

seq1  C-TCTCCAAATTGCTTTGAGTCATGATATCCTATCATAGCAATAGAAAAC  341
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCAAATTGCTTTGAGTCATGATATCCTATCATAGCAATAGAAAAC  345

seq1  CCAAGGCCCTACAAATCATAAACTGCAATGGAAACTGGTTGACTTCACTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCCCTACAAATCATAAACTGCAATGGAAACTGGTTGACTTCACTG  395

seq1  AGCTATTTACAAGAAGATGTTTTCTTGCTCTGGGCAAGCCTGTGAGCCCT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTACAAGAAGATGTTTTCTTGCTCTGGGCAAGCCTGTGAGCCCT  445

seq1  GAGAGCAAGACAAGCAAGAGTTACAGGGGTGGCAGTGGCAGAGACTAGAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAAGACAAGCAAGAGTTACAGGGGTGGCAGTGGCAGAGACTAGAG  495

seq1  AAGTGTTGGCAGTAATAGTCAAGGAAACACCAGAACTGAAGACATGGGTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTGGCAGTAATAGTCAAGGAAACACCAGAACTGAAGACATGGGTG  545

seq1  AACATATAGATTAAAGCTTTTTTAAAACATCACCTGAACAGACTTCTTTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATAGATTAAAGCTTTTTTAAAACATCACCTGAACAGACTTCTTTC  595

seq1  CTTGCCTTTTTGAAAGCTTTTACCAGACTCCCAAATGTCAAGTGGGCACA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTTTTGAAAGCTTTTACCAGACTCCCAAATGTCAAGTGGGCACA  645

seq1  GTCGAGAGGCAAAGAGTCCCAAGATCTATATTTGCCTTTTTTAAACAAAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAGAGGCAAAGAGTCCCAAGATCTATATTTGCCTTTTTTAAACAAAG  695

seq1  TGGTTACTGAATTGTCATATGCTTTCTCGGTGTTTCCCAATTATTTTCAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACTGAATTGTCATATGCTTTCTCGGTGTTTCCCAATTATTTTCAC  745

seq1  TGAACATGAAAGGTAAGTCTCGAGTTAAAGTACTAAGGTCCTATGGCTCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATGAAAGGTAAGTCTCGAGTTAAAGTACTAAGGTCCTATGGCTCT  795

seq1  CTTAAATGTAGAGTTCCACCATATCTGAAGAGAGAGGAACTTGGCCAAGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATGTAGAGTTCCACCATATCTGAAGAGAGAGGAACTTGGCCAAGG  845

seq1  CTTCCGTCTCGGCTCTACCCTCTGATAAATAATATCTGACTTCCAATTCT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGTCTCGGCTCTACCCTCTGATAAATAATATCTGACTTCCAATTCT  895

seq1  CTTTCCTCAGCCAGTTGGTATAAATACCTACCTGTGAGTACTCTCTGTTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCAGCCAGTTGGTATAAATACCTACCTGTGAGTACTCTCTGTTA  945

seq1  GTTCTGCTGCCGAACCAGCCCATTGTTTTCTTCATGCTGAGACAGCAGTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCTGCCGAACCAGCCCATTGTTTTCTTCATGCTGAGACAGCAGTG  995

seq1  ATGCGGACTGAAATAATTAATTAATTAATTAATTAATTTAAAAAACACCG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGACTGAAATAATTAATTAATTAATTAATTAATTTAAAAAACACCG  1045

seq1  GCAAAGGAGAATTTGGCCACTAAAATTTAAAACTTTGTGTCTCTCTCAGA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGAGAATTTGGCCACTAAAATTTAAAACTTTGTGTCTCTCTCAGA  1095

seq1  GATTTACTTCTGGAACTAGAATTC  1115
      ||||||||||||||||||||||||
seq2  GATTTACTTCTGGAACTAGAATTC  1119