BAC Information

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BAC

Clone NameB6Ng01-011F18
Chromosome1 (Build37)
Map Location 170,492,936 - 170,610,614
singlet/doubletdoublet
Overlap genenone
Upstream geneRxrg, Lmx1a, LOC100039879, Pbx1
Downstream geneEG383613, Nuf2, Rgs5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011F18.bB6Ng01-011F18.g
ACCDH846767DH846768
length1,141936
definitionDH846767|Mus musculus domesticus DNA, BAC clone: B6Ng01-011F18, 5' end.DH846768|Mus musculus domesticus DNA, BAC clone: B6Ng01-011F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,609,457 - 170,610,614)(170,492,936 - 170,493,551)
sequence
gaattctaagaggtagagaaatatggtcttcttgatgttgatggacccat
gaaatgaagtggcctattctatcttttcaatacctgcccatcagctggca
tgggttagtgccaaatgatttaatgccatgtctagtaagccacacaaatt
gtccattctagtaacacaagagagccaatcacaaggtgaaaggttttcta
gcttttcagaatgggactctaagggtgcctgtggtttagtaggaaaaaaa
aactacagacttaaacaacctgggtttgaatgtggttctacctcatattc
taagcacttcaactctgtctttccatttatcagctaagtggagtaaccat
gcttattttgctacactgtgaaaataaggaaatgtatccacttatacatt
tatgctttccttcatccacaactatctgatccatgtaggaaaagccatga
tgtcttgtgatagtttgaatttattaaggcgtaaatgtaagatattatat
tatcctcaagtgtcttcaaagtgctcctataaaaataagtattatccatt
tttattaatacagctctaggaaatgtgattgtccaaaaattcaatattcg
ataactaactagctcaccgagccatgatgataaagcagaattcccaatct
tcacataatttcaagtgaactacatcttaaaaataatacagaaatcattt
tatcctttatgatcttcatatcattttactgtgaagagctcaaattctgt
aggttttcccattagtaatcattatcaccatttgcctaaggcagtaatag
tcttgacacaactctttcctaatcactgaatagtacccaaaactttttaa
agagagatgggatgtgaaaataaaaagattttgagaggcagctataaatt
atactgtacgctggaagtgaggcaagagcaataattcccagccattggag
aattaatatagtcctctctgttcctgccttaagacttctctacacatgag
accagggggacatcaataagtgaaatgtaatgctaagtaaagtagaaatt
tcatgtccctttctattgagagcaatataaatctaagttcacttatctaa
cagttctaataaaccttacatgaatgccttaaattcatctg
gaattctagaaagataaaaaatttttttcaaagcagtgggagagaattct
agaaagataaaaaaattttttcaaaacagtgggagagacattatatataa
tgtcatatataaacattctttaataagtttgatagcaaaagtcaatatgc
tgatatagttaatgcactagtgtctaaaccaggaataggagcagcaataa
cagcgtgaggctgagttagttgctcagtggtacaacacatgtgccagtgt
accaggttctaggttccatcctaaaggctagaaagaccaaacaaagcaaa
gtaaaacaaaacaaaaataacaggaccaaaatcatgtaccgagaatactt
catttcaaatgttcttaaatttctcagatgatcaaaacctggggagtctg
gtactagtgttataattagaaaattcttagggaagttttttagggtaaaa
tgtccaaagacaatggacaataacaagaagctgtgtaaagttacaatgag
atagatagagtggttataaaggccaacactattataactattttatctcc
atgtttgatttccatacgattagtgagaataaaaatatcattctgagatg
tagcattattttaactgacttctatattacatcttggtgttctgtatgat
ttagaagactagtgcattgaaagcattattagtttatgctatgcggatac
attatatcaaaatatactttataatctcaatagatgagatagatggaggc
agacatataagggagacatgtttttatgtcttaaatgattttttttttac
aaatttaaattaaagtgtaactgtaggatgctaagtgtaaattgccatta
taaccacaagaattatctttagattatagagaagataaaggggaatggat
ttgaatattttcactatagcatttgtgctaaccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_170609457_170610614
seq2: B6Ng01-011F18.b_44_1184 (reverse)

seq1  CAGATGAATATTATAGCATTCATGTAAAGAGTTTATAGGAAACTGTTAAG  50
      ||||||||| |||  ||||||||||||   ||||||  | ||||||| ||
seq2  CAGATGAAT-TTAAGGCATTCATGTAA--GGTTTATTAG-AACTGTT-AG  45

seq1  ATTAAGTG-ACTTAGATATAATTATTTGGCTCTCAAATAGAAAAGGGGAC  99
      | |||||| ||||||||    |||| | |||||| ||||||||  |||||
seq2  A-TAAGTGAACTTAGAT----TTATATTGCTCTC-AATAGAAA--GGGAC  87

seq1  ATGAAATTTTCCTTACTTTACTTAGCATTACATTTTCACTAATTGATGTC  149
      |||||||||    ||||||||||||||||||| ||||||| |||||||||
seq2  ATGAAATTT---CTACTTTACTTAGCATTACA-TTTCACTTATTGATGTC  133

seq1  CCCCTGGTCTCATGTGTAGAGAAGTCTTAAGGCAGGAACAGAGAGGACTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGTCTCATGTGTAGAGAAGTCTTAAGGCAGGAACAGAGAGGACTA  183

seq1  TTATTAATTCTCCAATGGCTGGGAATTATTGCTCTTGCCTCACTTCCAGC  249
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TATTAATTCTCCAATGGCTGGGAATTATTGCTCTTGCCTCACTTCCAGC  232

seq1  GTACAGTATAATTTATAGCTGCCTCTCAAAATCTTTTTATTTTCACATCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTATAATTTATAGCTGCCTCTCAAAATCTTTTTATTTTCACATCC  282

seq1  CATCTCTCTTTAAAAAGTTTTGGGTACTATTCAGTGATTAGGAAAGAGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCTTTAAAAAGTTTTGGGTACTATTCAGTGATTAGGAAAGAGTT  332

seq1  GTGTCAAGACTATTACTGCCTTAGGCAAATGGTGATAATGATTACTAATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAAGACTATTACTGCCTTAGGCAAATGGTGATAATGATTACTAATG  382

seq1  GGAAAACCTACAGAATTTGAGCTCTTCACAGTAAAATGATATGAAGATCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACCTACAGAATTTGAGCTCTTCACAGTAAAATGATATGAAGATCA  432

seq1  TAAAGGATAAAATGATTTCTGTATTATTTTTAAGATGTAGTTCACTTGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGATAAAATGATTTCTGTATTATTTTTAAGATGTAGTTCACTTGAA  482

seq1  ATTATGTGAAGATTGGGAATTCTGCTTTATCATCATGGCTCGGTGAGCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTGAAGATTGGGAATTCTGCTTTATCATCATGGCTCGGTGAGCTA  532

seq1  GTTAGTTATCGAATATTGAATTTTTGGACAATCACATTTCCTAGAGCTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTATCGAATATTGAATTTTTGGACAATCACATTTCCTAGAGCTGT  582

seq1  ATTAATAAAAATGGATAATACTTATTTTTATAGGAGCACTTTGAAGACAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAAAAATGGATAATACTTATTTTTATAGGAGCACTTTGAAGACAC  632

seq1  TTGAGGATAATATAATATCTTACATTTACGCCTTAATAAATTCAAACTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGATAATATAATATCTTACATTTACGCCTTAATAAATTCAAACTAT  682

seq1  CACAAGACATCATGGCTTTTCCTACATGGATCAGATAGTTGTGGATGAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGACATCATGGCTTTTCCTACATGGATCAGATAGTTGTGGATGAAG  732

seq1  GAAAGCATAAATGTATAAGTGGATACATTTCCTTATTTTCACAGTGTAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCATAAATGTATAAGTGGATACATTTCCTTATTTTCACAGTGTAGC  782

seq1  AAAATAAGCATGGTTACTCCACTTAGCTGATAAATGGAAAGACAGAGTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGCATGGTTACTCCACTTAGCTGATAAATGGAAAGACAGAGTTG  832

seq1  AAGTGCTTAGAATATGAGGTAGAACCACATTCAAACCCAGGTTGTTTAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTTAGAATATGAGGTAGAACCACATTCAAACCCAGGTTGTTTAAG  882

seq1  TCTGTAGTTTTTTTTTCCTACTAAACCACAGGCACCCTTAGAGTCCCATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGTTTTTTTTTCCTACTAAACCACAGGCACCCTTAGAGTCCCATT  932

seq1  CTGAAAAGCTAGAAAACCTTTCACCTTGTGATTGGCTCTCTTGTGTTACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGCTAGAAAACCTTTCACCTTGTGATTGGCTCTCTTGTGTTACT  982

seq1  AGAATGGACAATTTGTGTGGCTTACTAGACATGGCATTAAATCATTTGGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGACAATTTGTGTGGCTTACTAGACATGGCATTAAATCATTTGGC  1032

seq1  ACTAACCCATGCCAGCTGATGGGCAGGTATTGAAAAGATAGAATAGGCCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCCATGCCAGCTGATGGGCAGGTATTGAAAAGATAGAATAGGCCA  1082

seq1  CTTCATTTCATGGGTCCATCAACATCAAGAAGACCATATTTCTCTACCTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTCATGGGTCCATCAACATCAAGAAGACCATATTTCTCTACCTC  1132

seq1  TTAGAATTC  1158
      |||||||||
seq2  TTAGAATTC  1141

seq1: chr1_170492936_170493551
seq2: B6Ng01-011F18.g_63_678

seq1  GAATTCTAGAAAGATAAAAAATTTTTTTCAAAGCAGTGGGAGAGAATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAAAGATAAAAAATTTTTTTCAAAGCAGTGGGAGAGAATTCT  50

seq1  AGAAAGATAAAAAAATTTTTTCAAAACAGTGGGAGAGACATTATATATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATAAAAAAATTTTTTCAAAACAGTGGGAGAGACATTATATATAA  100

seq1  TGTCATATATAAACATTCTTTAATAAGTTTGATAGCAAAAGTCAATATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATATATAAACATTCTTTAATAAGTTTGATAGCAAAAGTCAATATGC  150

seq1  TGATATAGTTAATGCACTAGTGTCTAAACCAGGAATAGGAGCAGCAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAGTTAATGCACTAGTGTCTAAACCAGGAATAGGAGCAGCAATAA  200

seq1  CAGCGTGAGGCTGAGTTAGTTGCTCAGTGGTACAACACATGTGCCAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTGAGGCTGAGTTAGTTGCTCAGTGGTACAACACATGTGCCAGTGT  250

seq1  ACCAGGTTCTAGGTTCCATCCTAAAGGCTAGAAAGACCAAACAAAGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTTCTAGGTTCCATCCTAAAGGCTAGAAAGACCAAACAAAGCAAA  300

seq1  GTAAAACAAAACAAAAATAACAGGACCAAAATCATGTACCGAGAATACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACAAAACAAAAATAACAGGACCAAAATCATGTACCGAGAATACTT  350

seq1  CATTTCAAATGTTCTTAAATTTCTCAGATGATCAAAACCTGGGGAGTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAAATGTTCTTAAATTTCTCAGATGATCAAAACCTGGGGAGTCTG  400

seq1  GTACTAGTGTTATAATTAGAAAATTCTTAGGGAAGTTTTTTAGGGTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAGTGTTATAATTAGAAAATTCTTAGGGAAGTTTTTTAGGGTAAAA  450

seq1  TGTCCAAAGACAATGGACAATAACAAGAAGCTGTGTAAAGTTACAATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAAGACAATGGACAATAACAAGAAGCTGTGTAAAGTTACAATGAG  500

seq1  ATAGATAGAGTGGTTATAAAGGCCAACACTATTATAACTATTTTATCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGAGTGGTTATAAAGGCCAACACTATTATAACTATTTTATCTCC  550

seq1  ATGTTTGATTTCCATACGATTAGTGAGAATAAAAATATCATTCTGAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGATTTCCATACGATTAGTGAGAATAAAAATATCATTCTGAGATG  600

seq1  TAGCATTATTTTAACT  616
      ||||||||||||||||
seq2  TAGCATTATTTTAACT  616