BAC Information

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BAC

Clone NameB6Ng01-011M06
Chromosome1 (Build37)
Map Location 101,193,831 - 101,288,835
singlet/doubletdoublet
Overlap genenone
Upstream geneSlco6d1, LOC100041868, EG666182
Downstream geneC230078M14Rik, LOC633295, EG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011M06.bB6Ng01-011M06.g
ACCDH847056DH847057
length1,175945
definitionDH847056|Mus musculus domesticus DNA, BAC clone: B6Ng01-011M06, 5' end.DH847057|Mus musculus domesticus DNA, BAC clone: B6Ng01-011M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,287,632 - 101,288,835)(101,193,831 - 101,194,511)
sequence
gaattccaaatacatgttgtggcagaatataaatgtgtttgatctatagc
atggaataagttatcagaattatctgttgatcaccccactatagaaagaa
aaatccatttagtccacccaaagccttctaaaataggatgcatgcattat
ctgtgcattgaatggccagtaatcggagatgaaaacctgttttctgagca
ggtgttacctggtatgagaatgaatgatatttatatatgccttccaaata
aataaacacagacctcattacttattctaaaactgtcataaacagtatat
ctcctaaactagagagatatcaggttggagagttggatcagtgtgtgtat
gccattaatactaaacttgctgacctacattgcatttttgaaagatggaa
agacagaaatttttttccaacctctcctcaaccctccacatgcatgcatg
ctccacataagtaaataagtatgaaaagatacaaatgatctagttcttta
tatgcaacttttcttcccattcccacaatgtcagaacatggcagaatgca
gaactcgtacagtcttatttgagtcctctgttttgctctaaacccattct
gataaggctgtttagaaagtagttacttcatcaattcccagagcaaatag
cctcccagtatttggaatagagtcttgttgagcaggtgttaatatgttta
atttaaatgagtataactgcaagcaggttttataagctgttaaccgtttt
ggataaaatgaccttcacagtaacagcagcagtgactgatccaaacaggt
taagaattaatatgttttatgtaaacttcaaggtgcataaaaataaaaaa
agaaagagctgttaacattgactattggtttacagaatttggcagctaag
tgattaactattaacaagaggaaagcatataagaaaaatacatagaaaat
agcctcaaatttaatttaaggggctggaaagatgactcagtagttacaga
actgactgctttacagaggtctggtgctcatttcaggtacacatggtggc
tccctaacatctgtaatgggattctatgctcttttgttgtctgaaacagt
taccatgtttaattacatggataatataattttaacttaatttatggctg
agaaaacttctgagctaaccggttc
gaattccactgaagtaacagatcaggtatatagagtgggcttgttggttt
ttagacatatagttatatgtgaatttttttaaattcctaagaaggaaaaa
aagtgtaatgggcaatgatattttatgaaggtaaccccaagggttggaaa
taatcctgattttttttcttcatcccacatatattttttatttgatattc
tctctatttacatttcaaatgttatcccctttcccagttttacctcggga
aatcctccatcccatgttccctccacattttccatgagggtgttccccca
cccacccacacacttcctactccccaccctggcattccccaccactgctg
catcatgacttcaaaggaccaaaggcctttcctcccattggtgcccaaca
aagccatcctctgctacatatacagatggagccatgggtacctccatgtg
tacactttggttggtaatttaatccctgtgagttcttggggctctggttg
gttaatatttttgttctttttgggggctactcttcaatgaagtgctttct
ttaactcttccattggggacccctgctcataccaatggttggctgtgagc
atccatctctatatttgtcagactcctgtagaacctctcaggagatagct
atatcaggctcctgccaattgaattagtaccaattgttgaaaatgctgtc
ttttttccaatggaaggttttagttcctttgtcaaagatcaagtgaccat
aggtttgtgggttcaattttaggtcttcaattctattccattgatctatc
ttcctctcactctaccaatgccatgtgtttttaatcattatttctctgta
atacagctccaggaaagggatggtgatttcccccagatgttctattattg
ttgagatagttttactatcctggtttttttttgttatccaggtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_101287632_101288835
seq2: B6Ng01-011M06.b_47_1221 (reverse)

seq1  GAACGGGTTAGCTTTCAGTAAGTTTTCTCAGCATAAAATTAAGTTTTTAA  50
      |||| |||||||  |||| |||||||||||||   ||||||||||    |
seq2  GAACCGGTTAGC--TCAG-AAGTTTTCTCAGCCATAAATTAAGTT----A  43

seq1  AAATTATTTATTTATTCTATGTATATTAAAACATTGTAACTGTTTTCAGA  100
      ||||||  ||||   || ||||| ||| |||||| ||||||| |||||||
seq2  AAATTA--TATT--ATCCATGTA-ATT-AAACATGGTAACTG-TTTCAGA  86

seq1  CAAACAAAAAGAGGGCATAGGATCCCATTACAGATGTTAGTGAGCCACCA  150
      | ||||||   || |||||| ||||||||||||||||||| |||||||||
seq2  C-AACAAA---AGAGCATAGAATCCCATTACAGATGTTAGGGAGCCACCA  132

seq1  TGTGGTACTTGAAAATTGAGCACCAGACCTCTGTAAAAGCAGTCAGTTCT  200
      ||| |||| |||||  |||||||||||||||||| |||||||||||||||
seq2  TGT-GTACCTGAAA--TGAGCACCAGACCTCTGT-AAAGCAGTCAGTTCT  178

seq1  GTTAACTACTGAGTCATCTTTCCAGCCCCTTAAATTAAATTTTGAGGCTA  250
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  G-TAACTACTGAGTCATCTTTCCAGCCCCTTAAATTAAA-TTTGAGGCTA  226

seq1  TTTTTCTATTGTTATTTTTCCTTATATGCTTTCCTCTTGTTAATAGTTAA  300
       ||||||||   ||||||| ||||||||||||||||||||||||||||||
seq2  -TTTTCTAT--GTATTTTT-CTTATATGCTTTCCTCTTGTTAATAGTTAA  272

seq1  TCACCTTAGCTGCCAAATTCTGTAAACCAATAGTCAATGTTAACAGCTCT  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA-CTTAGCTGCCAAATTCTGTAAACCAATAGTCAATGTTAACAGCTCT  321

seq1  TTCTTTTTTTATTTTTATGCACCTTGAAGTTTACATAAAACATATTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTTATTTTTATGCACCTTGAAGTTTACATAAAACATATTAATT  371

seq1  CTTAACCTGTTTGGATCAGTCACTGCTGCTGTTACTGTGAAGGTCATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCTGTTTGGATCAGTCACTGCTGCTGTTACTGTGAAGGTCATTTT  421

seq1  ATCCAAAACGGTTAACAGCTTATAAAACCTGCTTGCAGTTATACTCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAACGGTTAACAGCTTATAAAACCTGCTTGCAGTTATACTCATTT  471

seq1  AAATTAAACATATTAACACCTGCTCAACAAGACTCTATTCCAAATACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAACATATTAACACCTGCTCAACAAGACTCTATTCCAAATACTGG  521

seq1  GAGGCTATTTGCTCTGGGAATTGATGAAGTAACTACTTTCTAAACAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTATTTGCTCTGGGAATTGATGAAGTAACTACTTTCTAAACAGCCT  571

seq1  TATCAGAATGGGTTTAGAGCAAAACAGAGGACTCAAATAAGACTGTACGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAATGGGTTTAGAGCAAAACAGAGGACTCAAATAAGACTGTACGA  621

seq1  GTTCTGCATTCTGCCATGTTCTGACATTGTGGGAATGGGAAGAAAAGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCATTCTGCCATGTTCTGACATTGTGGGAATGGGAAGAAAAGTTG  671

seq1  CATATAAAGAACTAGATCATTTGTATCTTTTCATACTTATTTACTTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAAGAACTAGATCATTTGTATCTTTTCATACTTATTTACTTATGT  721

seq1  GGAGCATGCATGCATGTGGAGGGTTGAGGAGAGGTTGGAAAAAAATTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATGCATGCATGTGGAGGGTTGAGGAGAGGTTGGAAAAAAATTTCT  771

seq1  GTCTTTCCATCTTTCAAAAATGCAATGTAGGTCAGCAAGTTTAGTATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCCATCTTTCAAAAATGCAATGTAGGTCAGCAAGTTTAGTATTAA  821

seq1  TGGCATACACACACTGATCCAACTCTCCAACCTGATATCTCTCTAGTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATACACACACTGATCCAACTCTCCAACCTGATATCTCTCTAGTTTA  871

seq1  GGAGATATACTGTTTATGACAGTTTTAGAATAAGTAATGAGGTCTGTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATATACTGTTTATGACAGTTTTAGAATAAGTAATGAGGTCTGTGTT  921

seq1  TATTTATTTGGAAGGCATATATAAATATCATTCATTCTCATACCAGGTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTGGAAGGCATATATAAATATCATTCATTCTCATACCAGGTAA  971

seq1  CACCTGCTCAGAAAACAGGTTTTCATCTCCGATTACTGGCCATTCAATGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTCAGAAAACAGGTTTTCATCTCCGATTACTGGCCATTCAATGC  1021

seq1  ACAGATAATGCATGCATCCTATTTTAGAAGGCTTTGGGTGGACTAAATGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAATGCATGCATCCTATTTTAGAAGGCTTTGGGTGGACTAAATGG  1071

seq1  ATTTTTCTTTCTATAGTGGGGTGATCAACAGATAATTCTGATAACTTATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTTCTATAGTGGGGTGATCAACAGATAATTCTGATAACTTATT  1121

seq1  CCATGCTATAGATCAAACACATTTATATTCTGCCACAACATGTATTTGGA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTATAGATCAAACACATTTATATTCTGCCACAACATGTATTTGGA  1171

seq1  ATTC  1204
      ||||
seq2  ATTC  1175

seq1: chr1_101193831_101194511
seq2: B6Ng01-011M06.g_65_745

seq1  GAATTCCACTGAAGTAACAGATCAGGTATATAGAGTGGGCTTGTTGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGAAGTAACAGATCAGGTATATAGAGTGGGCTTGTTGGTTT  50

seq1  TTAGACATATAGTTATATGTGAATTTTTTTAAATTCCTAAGAAGGAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACATATAGTTATATGTGAATTTTTTTAAATTCCTAAGAAGGAAAAA  100

seq1  AAGTGTAATGGGCAATGATATTTTATGAAGGTAACCCCAAGGGTTGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAATGGGCAATGATATTTTATGAAGGTAACCCCAAGGGTTGGAAA  150

seq1  TAATCCTGATTTTTTTTCTTCATCCCACATATATTTTTTATTTGATATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTGATTTTTTTTCTTCATCCCACATATATTTTTTATTTGATATTC  200

seq1  TCTCTATTTACATTTCAAATGTTATCCCCTTTCCCAGTTTTACCTCGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTTACATTTCAAATGTTATCCCCTTTCCCAGTTTTACCTCGGGA  250

seq1  AATCCTCCATCCCATGTTCCCTCCACATTTTCCATGAGGGTGTTCCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCATCCCATGTTCCCTCCACATTTTCCATGAGGGTGTTCCCCCA  300

seq1  CCCACCCACACACTTCCTACTCCCCACCCTGGCATTCCCCACCACTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACACACTTCCTACTCCCCACCCTGGCATTCCCCACCACTGCTG  350

seq1  CATCATGACTTCAAAGGACCAAAGGCCTTTCCTCCCATTGGTGCCCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGACTTCAAAGGACCAAAGGCCTTTCCTCCCATTGGTGCCCAACA  400

seq1  AAGCCATCCTCTGCTACATATACAGATGGAGCCATGGGTACCTCCATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATCCTCTGCTACATATACAGATGGAGCCATGGGTACCTCCATGTG  450

seq1  TACACTTTGGTTGGTAATTTAATCCCTGTGAGTTCTTGGGGCTCTGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTTGGTTGGTAATTTAATCCCTGTGAGTTCTTGGGGCTCTGGTTG  500

seq1  GTTAATATTTTTGTTCTTTTTGGGGGCTACTCTTCAATGAAGTGCTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATTTTTGTTCTTTTTGGGGGCTACTCTTCAATGAAGTGCTTTCT  550

seq1  TTAACTCTTCCATTGGGGACCCCTGCTCATACCAATGGTTGGCTGTGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTTCCATTGGGGACCCCTGCTCATACCAATGGTTGGCTGTGAGC  600

seq1  ATCCATCTCTATATTTGTCAGACTCCTGTAGAACCTCTCAGGAGATAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTCTATATTTGTCAGACTCCTGTAGAACCTCTCAGGAGATAGCT  650

seq1  ATATCAGGCTCCTGCCAATTGAATTAGTACC  681
      |||||||||||||||||||||||||||||||
seq2  ATATCAGGCTCCTGCCAATTGAATTAGTACC  681