BAC Information

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BAC

Clone NameB6Ng01-011P23
Chromosome1 (Build37)
Map Location 80,559,950 - 80,670,661
singlet/doubletdoublet
Overlap geneDock10
Upstream geneAp1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik
Downstream geneLOC665092, 9430031J16Rik, EG621020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011P23.bB6Ng01-011P23.g
ACCDH847214DH847215
length1,1371,063
definitionDH847214|Mus musculus domesticus DNA, BAC clone: B6Ng01-011P23, 5' end.DH847215|Mus musculus domesticus DNA, BAC clone: B6Ng01-011P23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,559,950 - 80,561,091)(80,669,591 - 80,670,661)
sequence
gaattcacaactgaagttgaggtcctagcaggtaaaactatatctcagtg
aagttgctgtgaaatgactatttccagcaatcaggctattttaatgaggg
gcacacacccatggtttggtgcttggggaagacgtccaacatttctggca
gaatatacatagatagaaagccttgcagatagaatctcagagtggttcat
tctagaatgagattactaggtacttcttcttgtagcaacatttctaccat
accagttattgttaaaagaagtttctaacacaaagggtcccggttcttct
ccagttgtatttctagacatttagaatgcacaagtctatgtttatcacca
tgtatgacttgaatgcatttccgttaaaagtcaacaactccaaagacctc
atctgtgtggataaaataggactgtaggttttgtatgtattataatgtaa
tttagaatgcttgtctttgcctctggattgggttgcttctgtacattcag
tggaaggatgtttggagcagagctatcagagtacaaacatcatcccaagt
tcactggcaccaattcccagccaactgaaaatgagaaaagaatacttcca
agtggacacttgataaggaacactgaagaagcagtgcacaccaatgagat
ggtcaaatggttcatgacagaagataaaggactcaacataccagaagcag
gtacaaatatacagtaactggggaaatgaaataatgcctgagaaaaacaa
taaaaagagctaagaaaacattgcagaagaaacatagagcattcaacaaa
cccagagaagtcttccttcattagcccagaaatttcatatatttccaatg
tcaacttcaaaggagcactgttttagctttctcctttgttcttttctttc
caccagtcccatatcacacatgcacatagcagttttgcattaacattaat
atagttagcccaccaattaaagaaatggaattctgctaagtgaacttgtg
ttctgaccgtggcgggtcgttatcaaatgtcaagatgagatctcctcact
tgggtgcagaatagtaatgaacagccacacagcacaggggaattgaatca
gggccctatcatgactccttaccctaatgtatgactg
gaattcagagactcaatgagtggtagtttgaggtgttgtggagaccagta
gtccagagattctttcaagtgggtcagttcagcatttaagagatgttaac
taaggttcacctaacgagacttaaccactaccacccagatgcacaacctg
aatgctgttaatcagagaaacactgtctgcatcccagcatgtggcacaca
taggctgcctctcttcctagggaagctctgttgtgtctggagatggttga
ctgtcacaatggaagagaattatataactggcaagaggagtaagatgcaa
acagcatctcctggacagaatccagaagatgcatccttagacatcccaca
ggagacaggattccccttgacaaagaatgaactggtccaaaacgtccaaa
tgtcagtaattaagttttagaaaatgtgatttagataataacgtagagag
acatggcaagcatagccacctttattaagttagacgcagaggaatggtcc
atgaaaaggagatgacatgaaatcagaggagggtgtgacagataaaacag
gaagctgggaagatctgaggcacagattttaatggctgactttactccag
gggtttctcctcactcaccccaatacacagcacaatgcaaccagtgtgtt
aattttcctgactgagagtccattagggaaagggaacactgaattgtata
gtaagtcttcagtctggcataaataaataatttgtagagggaggtggtct
ccacagaaacactactgggtgactgtggcctaaaacacagtttggatgaa
ctcatgtcctggtcactgtttctcaaggtgcagtctatgcagtatccgta
atgaacattagcaagatgctcagtgtaacaggtgactggttcatatacta
agacctgaggtaggaatctactgctttagcatctttccatttgtacatat
actgggaaattttctttggcacaggtagggtataggaggtaattatttta
tattatcaaagcagacttgattccaggttcttcctagcttgttgtgtata
tgaaaagagaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_80559950_80561091
seq2: B6Ng01-011P23.b_48_1184

seq1  GAATTCACAACTGAAGTTGAGGTCCTAGCAGGTAAAACTATATCTCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAACTGAAGTTGAGGTCCTAGCAGGTAAAACTATATCTCAGTG  50

seq1  AAGTTGCTGTGAAATGACTATTTCCAGCAATCAGGCTATTTTAATGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCTGTGAAATGACTATTTCCAGCAATCAGGCTATTTTAATGAGGG  100

seq1  GCACACACCCATGGTTTGGTGCTTGGGGAAGACGTCCAACATTTCTGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACCCATGGTTTGGTGCTTGGGGAAGACGTCCAACATTTCTGGCA  150

seq1  GAATATACATAGATAGAAAGCCTTGCAGATAGAATCTCAGAGTGGTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATACATAGATAGAAAGCCTTGCAGATAGAATCTCAGAGTGGTTCAT  200

seq1  TCTAGAATGAGATTACTAGGTACTTCTTCTTGTAGCAACATTTCTACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATGAGATTACTAGGTACTTCTTCTTGTAGCAACATTTCTACCAT  250

seq1  ACCAGTTATTGTTAAAAGAAGTTTCTAACACAAAGGGTCCCGGTTCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTATTGTTAAAAGAAGTTTCTAACACAAAGGGTCCCGGTTCTTCT  300

seq1  CCAGTTGTATTTCTAGACATTTAGAATGCACAAGTCTATGTTTATCACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGTATTTCTAGACATTTAGAATGCACAAGTCTATGTTTATCACCA  350

seq1  TGTATGACTTGAATGCATTTCCGTTAAAAGTCAACAACTCCAAAGACCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGACTTGAATGCATTTCCGTTAAAAGTCAACAACTCCAAAGACCTC  400

seq1  ATCTGTGTGGATAAAATAGGACTGTAGGTTTTGTATGTATTATAATGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTGGATAAAATAGGACTGTAGGTTTTGTATGTATTATAATGTAA  450

seq1  TTTAGAATGCTTGTCTTTGCCTCTGGATTGGGTTGCTTCTGTACATTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATGCTTGTCTTTGCCTCTGGATTGGGTTGCTTCTGTACATTCAG  500

seq1  TGGAAGGATGTTTGGAGCAGAGCTATCAGAGTACAAACATCATCCCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGATGTTTGGAGCAGAGCTATCAGAGTACAAACATCATCCCAAGT  550

seq1  TCACTGGCACCAATTCCCAGCCAACTGAAAATGAGAAAAGAATACTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGCACCAATTCCCAGCCAACTGAAAATGAGAAAAGAATACTTCCA  600

seq1  AGTGGACACTTGATAAGGAACACTGAAGAAGCAGTGCACACCAATGAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACACTTGATAAGGAACACTGAAGAAGCAGTGCACACCAATGAGAT  650

seq1  GGTCAAATGGTTCATGACAGAAGATAAAGGACTCAACATACCAGAAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAATGGTTCATGACAGAAGATAAAGGACTCAACATACCAGAAGCAG  700

seq1  GTACAAATATACAGTAACTGGGGAAATGAAATAATGCCTGAGAAAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAATATACAGTAACTGGGGAAATGAAATAATGCCTGAGAAAAACAA  750

seq1  TAAAAAGAGCTAAGAAAACATTGCAGAAGAAACATAGAGCATTCAACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAGCTAAGAAAACATTGCAGAAGAAACATAGAGCATTCAACAAA  800

seq1  CCCAGAGAAGTCTTCCTTCATTAGCCCAGAAATTTCATATATTTCCAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGAAGTCTTCCTTCATTAGCCCAGAAATTTCATATATTTCCAATG  850

seq1  TCAACTTCAAAGGAGCACTGTTTTAGCTTTCTCCTTTGTTCTTTTCTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTCAAAGGAGCACTGTTTTAGCTTTCTCCTTTGTTCTTTTCTTTC  900

seq1  CACCAGTCCCATATCACACATGCACATAGCAGTTTTGCATTTAAACATTA  950
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  CACCAGTCCCATATCACACATGCACATAGCAGTTTTGCATT--AACATTA  948

seq1  ATATAGTTAGCCCACCAATTAAAAGAAATGGAATTCTGCTAAAGTGAACT  1000
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  ATATAGTTAGCCCACCAATT-AAAGAAATGGAATTCTGCT-AAGTGAACT  996

seq1  TGTGTTCTGACCGTGGCGGGTCGCCATCAAATGTCAGGGTGAGAACCTCT  1050
      |||||||||||||||||||||||  ||||||||||| | ||||| |  ||
seq2  TGTGTTCTGACCGTGGCGGGTCGTTATCAAATGTCAAGATGAGATCTCCT  1046

seq1  CACTT-GGTGCAGACAGGAAATGAGACAAGCCACACAGCACAGGGGATAT  1099
      ||||| ||||||||   | ||||| || |||||||||||||||||||  |
seq2  CACTTGGGTGCAGAATAGTAATGA-AC-AGCCACACAGCACAGGGGAATT  1094

seq1  G-ATCAGGGCCCTAATCATGACTCCTTACCTTAATGTATGACTG  1142
      | ||||||||||| |||||||||||||||| |||||||||||||
seq2  GAATCAGGGCCCT-ATCATGACTCCTTACCCTAATGTATGACTG  1137

seq1: chr1_80669591_80670661
seq2: B6Ng01-011P23.g_66_1128 (reverse)

seq1  GATTCTCTTTTTTAATATTTCCCGCAACAGGTTAGGGAGAACCTGGAATC  50
      |||||||||||   |||     | ||||| | |||| |||||||||||| 
seq2  GATTCTCTTTTCATATA-----CACAACAAGCTAGGAAGAACCTGGAAT-  44

seq1  CAGGTCTGCTTTGAT-ATATAAAATATATACCTTCCTTATACCCTACCCT  99
      || |||||||||||| ||||||||||  |||||  | ||||||||| |||
seq2  CAAGTCTGCTTTGATAATATAAAATAATTACCT--CCTATACCCTA-CCT  91

seq1  GTTGCCAAAGAAAATTTCCCAGTATATGTACAAATGGAAAGATGCTAAAG  149
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TGCCAAAGAAAATTTCCCAGTATATGTACAAATGGAAAGATGCTAAAG  140

seq1  CAGTAGATTCCTACCTCAGGTCTTAGTATATGAACCAGTCACCTGTTACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGATTCCTACCTCAGGTCTTAGTATATGAACCAGTCACCTGTTACA  190

seq1  CTGAGCATCTTGCTAATGTTCATTACGGATACTGCATAGACTGCACCTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCATCTTGCTAATGTTCATTACGGATACTGCATAGACTGCACCTTG  240

seq1  AGAAACAGTGACCAGGACATGAGTTCATCC-AACTGTGTTTTAGGCCACA  298
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGAAACAGTGACCAGGACATGAGTTCATCCAAACTGTGTTTTAGGCCACA  290

seq1  GTCACCCAGTAGTGTTTCTGTGGAGACCACCTCCCTCTACAAATTATTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCAGTAGTGTTTCTGTGGAGACCACCTCCCTCTACAAATTATTTA  340

seq1  TTTATGCCAGACTGAAGACTTACTATACAATTCAGTGTTCCCTTTCCCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCCAGACTGAAGACTTACTATACAATTCAGTGTTCCCTTTCCCTA  390

seq1  ATGGACTCTCAGTCAGGAAAATTAACACACTGGTTGCATTGTGCTGTGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTCTCAGTCAGGAAAATTAACACACTGGTTGCATTGTGCTGTGTA  440

seq1  TTGGGGTGAGTGAGGAGAAACCCCTGGAGTAAAGTCAGCCATTAAAATCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTGAGTGAGGAGAAACCCCTGGAGTAAAGTCAGCCATTAAAATCT  490

seq1  GTGCCTCAGATCTTCCCAGCTTCCTGTTTTATCTGTCACACCCTCCTCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCAGATCTTCCCAGCTTCCTGTTTTATCTGTCACACCCTCCTCTG  540

seq1  ATTTCATGTCATCTCCTTTTCATGGACCATTCCTCTGCGTCTAACTTAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGTCATCTCCTTTTCATGGACCATTCCTCTGCGTCTAACTTAAT  590

seq1  AAAGGTGGCTATGCTTGCCATGTCTCTCTACGTTATTATCTAAATCACAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGGCTATGCTTGCCATGTCTCTCTACGTTATTATCTAAATCACAT  640

seq1  TTTCTAAAACTTAATTACTGACATTTGGACGTTTTGGACCAGTTCATTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAACTTAATTACTGACATTTGGACGTTTTGGACCAGTTCATTCT  690

seq1  TTGTCAAGGGGAATCCTGTCTCCTGTGGGATGTCTAAGGATGCATCTTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGGGGAATCCTGTCTCCTGTGGGATGTCTAAGGATGCATCTTCT  740

seq1  GGATTCTGTCCAGGAGATGCTGTTTGCATCTTACTCCTCTTGCCAGTTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTGTCCAGGAGATGCTGTTTGCATCTTACTCCTCTTGCCAGTTAT  790

seq1  ATAATTCTCTTCCATTGTGACAGTCAACCATCTCCAGACACAACAGAGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCTCTTCCATTGTGACAGTCAACCATCTCCAGACACAACAGAGCT  840

seq1  TCCCTAGGAAGAGAGGCAGCCTATGTGTGCCACATGCTGGGATGCAGACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGGAAGAGAGGCAGCCTATGTGTGCCACATGCTGGGATGCAGACA  890

seq1  GTGTTTCTCTGATTAACAGCATTCAGGTTGTGCATCTGGGTGGTAGTGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTCTGATTAACAGCATTCAGGTTGTGCATCTGGGTGGTAGTGGT  940

seq1  TAAGTCTCGTTAGGTGAACCTTAGTTAACATCTCTTAAATGCTGAACTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTCGTTAGGTGAACCTTAGTTAACATCTCTTAAATGCTGAACTGA  990

seq1  CCCACTTGAAAGAATCTCTGGACTACTGGTCTCCACAACACCTCAAACTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTGAAAGAATCTCTGGACTACTGGTCTCCACAACACCTCAAACTA  1040

seq1  CCACTCATTGAGTCTCTGAATTC  1071
      |||||||||||||||||||||||
seq2  CCACTCATTGAGTCTCTGAATTC  1063