BAC Information

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BAC

Clone NameB6Ng01-012D19
Chromosome1 (Build37)
Map Location 96,717,629 - 96,890,665
singlet/doubletdoublet
Overlap genenone
Upstream geneIng5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
Downstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012D19.bB6Ng01-012D19.g
ACCDH847384DH847385
length1,095965
definitionDH847384|Mus musculus domesticus DNA, BAC clone: B6Ng01-012D19, 5' end.DH847385|Mus musculus domesticus DNA, BAC clone: B6Ng01-012D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,717,629 - 96,718,732)(96,889,707 - 96,890,665)
sequence
gaattcatcttgttccaaagtaaagcacttgtatggaagtggaacacatt
ctctctgggcagtggaggcttacattgtagcccttacttatgatcttcca
ctagggtaacacattttactttgtttattctggtgtataacagggagtat
tactcttacatcacaatatatttctataaaatatgaaataccctacttat
gaaagtgtaataaccctaagctattaccatagtatttttgtcactaatca
caacactaatagcttgacaacctaacctagtaccttgacttgcaagtctg
gaacactgttttctgggttgggatcagcaataccaatcagccttggttct
ccgtatttaatctatgtacttttcactactggagagaggtggtatcactt
aaatggaagtctctacagacaaatacttggagtctagtgggggaatgaat
cattacaatcattccctataagacagaatgcaggggctggtgagatggct
cagtggttaagagcgccaactgctcttccgaaagtcccgagttcaaatcc
cagcaaccacatggtggttcataaccatccgtaacgaaatctgatgacct
ctactggggtatctgaggatagctacagtgtacttacatataataaataa
atcttaaaaaaaaagacagaatgcagaagtaattgacataaagttcatgt
atgttaatttgtatataggtcttagagtaaatataattgttccagttatt
gacttcataatgcatgggcctattgcccatgtatatgtgagtttcaatat
tctattggatatcttagaatgagagaattgcccaagactaatgatgttcc
aaagtagttcatctctggagaaagctactgaacttgctggtgaacatgcc
attgattatacgtcaatattttgtaaacatgtgaacaaatgcaatttatg
ctttagaaaattaaaattactttgattatttaaaatagatgatcaaagta
tgagcatattcaggcaatcagtgagagtttggaatagaatttatcaggat
tgaagtagtcttatttgtggtttcagtcttaactctgctattttt
gaattcacttctgcctgttgtagtgaaaactgggtgaactttcttaagaa
ataaatcataaaaatgtgtgaggaaatgaagaacacagatcagaatttaa
atttttgagacatagttaaaatataaaatttataaacgaacctactgagc
ctataagccaggatgtaagttttaacttttctaggttctcattctaaaat
actgacgttaaaacattcacaaatgtgtttagatatgacaccatcactag
tgttttataaagaataactaatgagcctgaatacctgtttttgatgctac
tatttttcttatcgctgtgagaaaatacctgacaaaagcagcctagagaa
tgtaggacttatttcttgtcacagtataagtttattttctgtcgtgtaac
aggtccatcatggtggtaagagtggctttagctgtggtctcattgcaacc
atagtcaggaaacaaaagtgaatgcctgtgctcagatcactgttcttcct
attcatttgcaaattctagtctgtgggatctttgcttccacattcaagat
gcatttttacactttagttaaacctcttcagcagaacctgtcctgacaag
tttttcttctaggcattttaagacttaagttggctatcaagctaaagaac
aagcaaccagaccccccagagctcccagggacaaagccactaaccaaaga
gtacacatgaagggactacatgctccatatgcagcatcaatgggaggaga
ggcccttggtcctgtgaaggctcaatgccccagtgtaggggaatctcagg
aaggtgaggtgggagtgggtagggaagcacccccatagaagcaggggagc
agaatgggattgagagaggggtcaatatgatcagggacatgtacaaaata
ctcaaaactcagtaaaacaaagcagagcagtatatgtgactgtgtagttt
tattattcaaaaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_96717629_96718732
seq2: B6Ng01-012D19.b_42_1136

seq1  GAATTCATCTTGTTCCAAAGTAAAGCACTTGTATGGAAGTGGAACACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTGTTCCAAAGTAAAGCACTTGTATGGAAGTGGAACACATT  50

seq1  CTCTCTGGGCAGTGGAGGCTTACATTGTAGCCCTTACTTATGATCTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGGCAGTGGAGGCTTACATTGTAGCCCTTACTTATGATCTTCCA  100

seq1  CTAGGGTAACACATTTTACTTTGTTTATTCTGGTGTATAACAGGGAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGTAACACATTTTACTTTGTTTATTCTGGTGTATAACAGGGAGTAT  150

seq1  TACTCTTACATCACAATATATTTCTATAAAATATGAAATACCCTACTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTACATCACAATATATTTCTATAAAATATGAAATACCCTACTTAT  200

seq1  GAAAGTGTAATAACCCTAAGCTATTACCATAGTATTTTTGTCACTAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGTAATAACCCTAAGCTATTACCATAGTATTTTTGTCACTAATCA  250

seq1  CAACACTAATAGCTTGACAACCTAACCTAGTACCTTGACTTGCAAGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTAATAGCTTGACAACCTAACCTAGTACCTTGACTTGCAAGTCTG  300

seq1  GAACACTGTTTTCTGGGTTGGGATCAGCAATACCAATCAGCCTTGGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTGTTTTCTGGGTTGGGATCAGCAATACCAATCAGCCTTGGTTCT  350

seq1  CCGTATTTAATCTATGTACTTTTCACTACTGGAGAGAGGTGGTATCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTATTTAATCTATGTACTTTTCACTACTGGAGAGAGGTGGTATCACTT  400

seq1  AAATGGAAGTCTCTACAGACAAATACTTGGAGTCTAGTGGGGGAATGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAAGTCTCTACAGACAAATACTTGGAGTCTAGTGGGGGAATGAAT  450

seq1  CATTACAATCATTCCCTATAAGACAGAATGCAGGGGCTGGTGAGATGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAATCATTCCCTATAAGACAGAATGCAGGGGCTGGTGAGATGGCT  500

seq1  CAGTGGTTAAGAGCGCCAACTGCTCTTCCGAAAGTCCCGAGTTCAAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTAAGAGCGCCAACTGCTCTTCCGAAAGTCCCGAGTTCAAATCC  550

seq1  CAGCAACCACATGGTGGTTCATAACCATCCGTAACGAAATCTGATGACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACCACATGGTGGTTCATAACCATCCGTAACGAAATCTGATGACCT  600

seq1  CTACTGGGGTATCTGAGGATAGCTACAGTGTACTTACATATAATAAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGGGTATCTGAGGATAGCTACAGTGTACTTACATATAATAAATAA  650

seq1  ATCTTAAAAAAAAAGACAGAATGCAGAAGTAATTGACATAAAGTTCATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAAAAAAAAGACAGAATGCAGAAGTAATTGACATAAAGTTCATGT  700

seq1  ATGTTAATTTGTATATAGGTCTTAGAGTAAATATAATTGTTCCAGTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATTTGTATATAGGTCTTAGAGTAAATATAATTGTTCCAGTTATT  750

seq1  GACTTCATAATGCATGGGCCTATTGCCCATGTATATGTGAGTTTCAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCATAATGCATGGGCCTATTGCCCATGTATATGTGAGTTTCAATAT  800

seq1  TCTATTGGATATCTTAGAATGAGAGAATTGCCCAAGACTAATGATGTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGGATATCTTAGAATGAGAGAATTGCCCAAGACTAATGATGTTCC  850

seq1  AAAGTAGTTCATCTCTGGAGAAAGCTACTGAACTTGCTGGTGAACATGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGTTCATCTCTGGAGAAAGCTACTGAACTTGCTGGTGAACATGCC  900

seq1  ATTGATTATACGTCAATATTTTGTAAACATGTGAACAAATGCAATTTATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTATACGTCAATATTTTGTAAACATGTGAACAAATGCAATTTATG  950

seq1  CTTTAGAAAAATTAAAAAATTACTTTGATTATTTAAAATAGATGATCAAA  1000
      |||||||||| |   |||||||||||||||||||||||||||||||||||
seq2  CTTTAGAAAATT---AAAATTACTTTGATTATTTAAAATAGATGATCAAA  997

seq1  GTATGAGCATATCCAGGCAATCAGTGAGAGTTTGGAATAGAAATTTATCA  1050
      |||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  GTATGAGCATATTCAGGCAATCAGTGAGAGTTTGGAATAG-AATTTATCA  1046

seq1  GGAATTGAAGGTAGTCTTATTTGTGGTTTTCAGTCTTTAACTCTGCTATA  1100
      || |||||| |||||||||||||||| |||||||| ||||||||||||| 
seq2  GG-ATTGAA-GTAGTCTTATTTGTGG-TTTCAGTC-TTAACTCTGCTATT  1092

seq1  TTTT  1104
      ||| 
seq2  TTT-  1095

seq1: chr1_96889707_96890665
seq2: B6Ng01-012D19.g_65_1018 (reverse)

seq1  AATAAAACTACACTGTTCACATATACTGCTCTTGCTTTGTTTTACTAGGT  50
      ||||||||||||| | ||||||||||||||| |||||||||||||| |  
seq2  AATAAAACTACACAG-TCACATATACTGCTC-TGCTTTGTTTTACT-GAG  47

seq1  TTTTGAGTATTTTGTACAATGT-CCTGATCATATTGAACCCCTCTCTCAA  99
      ||||||||||||||||| |||| ||||||||||||| |||||||||||||
seq2  TTTTGAGTATTTTGTAC-ATGTCCCTGATCATATTG-ACCCCTCTCTCAA  95

seq1  CTCCCATTCTGCTCCCCTGCTTCTATGAGGGTGCTTCCCTACCCACTCCC  149
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  -TCCCATTCTGCTCCCCTGCTTCTATGGGGGTGCTTCCCTACCCACTCCC  144

seq1  ACCTCACCTTCCTGAGATTCCCCTACACTGGGGCATTGAGCCTTCACAGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACCTTCCTGAGATTCCCCTACACTGGGGCATTGAGCCTTCACAGG  194

seq1  ACCAAGGGCCTCTCCTCCCATTGATGCTGCATATGGAGCATGTAGTCCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGGCCTCTCCTCCCATTGATGCTGCATATGGAGCATGTAGTCCCT  244

seq1  TCATGTGTACTCTTTGGTTAGTGGCTTTGTCCCTGGGAGCTCTGGGGGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTACTCTTTGGTTAGTGGCTTTGTCCCTGGGAGCTCTGGGGGGT  294

seq1  CTGGTTGCTTGTTCTTTAGCTTGATAGCCAACTTAAGTCTTAAAATGCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGCTTGTTCTTTAGCTTGATAGCCAACTTAAGTCTTAAAATGCCT  344

seq1  AGAAGAAAAACTTGTCAGGACAGGTTCTGCTGAAGAGGTTTAACTAAAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAACTTGTCAGGACAGGTTCTGCTGAAGAGGTTTAACTAAAGT  394

seq1  GTAAAAATGCATCTTGAATGTGGAAGCAAAGATCCCACAGACTAGAATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATGCATCTTGAATGTGGAAGCAAAGATCCCACAGACTAGAATTT  444

seq1  GCAAATGAATAGGAAGAACAGTGATCTGAGCACAGGCATTCACTTTTGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGAATAGGAAGAACAGTGATCTGAGCACAGGCATTCACTTTTGTT  494

seq1  TCCTGACTATGGTTGCAATGAGACCACAGCTAAAGCCACTCTTACCACCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACTATGGTTGCAATGAGACCACAGCTAAAGCCACTCTTACCACCA  544

seq1  TGATGGACCTGTTACACGACAGAAAATAAACTTATACTGTGACAAGAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGACCTGTTACACGACAGAAAATAAACTTATACTGTGACAAGAAAT  594

seq1  AAGTCCTACATTCTCTAGGCTGCTTTTGTCAGGTATTTTCTCACAGCGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTACATTCTCTAGGCTGCTTTTGTCAGGTATTTTCTCACAGCGAT  644

seq1  AAGAAAAATAGTAGCATCAAAAACAGGTATTCAGGCTCATTAGTTATTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATAGTAGCATCAAAAACAGGTATTCAGGCTCATTAGTTATTCT  694

seq1  TTATAAAACACTAGTGATGGTGTCATATCTAAACACATTTGTGAATGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAACACTAGTGATGGTGTCATATCTAAACACATTTGTGAATGTTT  744

seq1  TAACGTCAGTATTTTAGAATGAGAACCTAGAAAAGTTAAAACTTACATCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTCAGTATTTTAGAATGAGAACCTAGAAAAGTTAAAACTTACATCC  794

seq1  TGGCTTATAGGCTCAGTAGGTTCGTTTATAAATTTTATATTTTAACTATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTATAGGCTCAGTAGGTTCGTTTATAAATTTTATATTTTAACTATG  844

seq1  TCTCAAAAATTTAAATTCTGATCTGTGTTCTTCATTTCCTCACACATTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAATTTAAATTCTGATCTGTGTTCTTCATTTCCTCACACATTTT  894

seq1  TATGATTTATTTCTTAAGAAAGTTCACCCAGTTTTCACTACAACAGGCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTATTTCTTAAGAAAGTTCACCCAGTTTTCACTACAACAGGCAG  944

seq1  AAGTGAATTC  959
      ||||||||||
seq2  AAGTGAATTC  954