BAC Information

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BAC

Clone NameB6Ng01-012I13
Chromosome1 (Build37)
Map Location 77,334,888 - 77,509,385
singlet/doubletdoublet
Overlap geneEpha4
Upstream geneLOC100039137, Tfdp1-ps
Downstream geneLOC100039330, Pax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012I13.bB6Ng01-012I13.g
ACCDH847601DH847602
length5511,167
definitionDH847601|Mus musculus domesticus DNA, BAC clone: B6Ng01-012I13, 5' end.DH847602|Mus musculus domesticus DNA, BAC clone: B6Ng01-012I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,508,829 - 77,509,385)(77,334,888 - 77,336,049)
sequence
caggtcctgggggtgagacagagagttggggtactcgggccgccaggaca
ggggcctcccattcccacccctcccccagcctgaagagccagcctccctg
atcaaattaataacccacagggtgtcttttagatgggcctttcgaccccc
aagcctgaagatcgtgctgggaaaggcagtgtggataggtttcgaattca
ttgcccctctttcaatgtcgtaggcacctgagaagggtaccgcagctcta
gaggcgtcttctcccttcccccctagcttggaggccgaatgttaggtgta
gcgcaagcatactaaatccattaggcagcactccatacctaaaattcaaa
ccagccatttcctggaggtggaggtctcatctcgcttgtcctccaaagga
cctacgaaaaaagagactgcttcagtgcgtttttgcattttaaccttacc
cttctggcaggcctccttgctggaactcaagatatttaaaaagcagaggg
tgcatacagtgggtctgtatttatttggggagggggggcataaggggagg
g
gaattcaaacacaagtggaactgggaacttggcttgtctcagaatcaata
aacttgtctctataatgaaagacaagagttgctagccagacctataagga
aaacatatctgttttgtgtactgcagacccctggtccatggacaatgtca
ctgaatgaaggcagaggccctccttgccggaaaggcaaactctgacctga
gcccaggaccgcctggttttaccaagtgctctcagatgcctgccttcaaa
agactggctggtttttatccaccggtgattgctcttagccatgctgaagc
ccgagtaagctttgccagtcacatcgctaggaatcgagagccaatcaaga
cagcatgattgatgctgatttgcagtttacaaaaagcaggaagagtgcat
aattttccatgtgattttttttcttgttttttttttttttccagaaacac
atctgaccctggataagttcatttatcgaggtttatttacttgtgctggc
cagtttcttaaaaagggagcccagtctttgttgcagagtttttttaaaaa
atcactttaaaatggagcaagatagatctttcaaaacaacaacaacaagt
ctagatccttatactatcttagtaaatttaattgatttgtataagaggaa
aactatttaggaaagaaaccagaaaatcacattactgtggtgacctaagt
atgaaatttaaagttaaaaatgtcagtaagccagatacattttagcttat
gaaaagcaccattctctacttctccccctcttgtctttctttggttcttt
gtctctttgtttctttctttctgtctgtcttttttatttggtgtttgctt
gtactgtttgctaagtgagagtgttatgtagcccaggctgctcctagaat
atactatgtagctaaagggtgctcttgagtttttgatgcttctcttctct
tatcttctaagtgctaggactatattctgtatcacagtcatggtttttat
gaggggctgaagttgagcctcagcgcttgtgaaactaagcaggcacttct
acaaagtgaactctatcctcacgttcctgcttcttcctgaaaggaataca
tttcaatctcactcctgaagattctgggagaggccaattggaggtaagta
tgagaggggttggacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_77508829_77509385
seq2: B6Ng01-012I13.b_48_604 (reverse)

seq1  CCCTCCCCTTATGCCCCCCCTCCCCAAATAAATACAGACCCACTGTATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCTTATGCCCCCCCTCCCCAAATAAATACAGACCCACTGTATGC  50

seq1  ACCCTCTGCTTTTTAAATATCTTGAGTTCCAGCAAGGAGGCCTGCCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTGCTTTTTAAATATCTTGAGTTCCAGCAAGGAGGCCTGCCAGAA  100

seq1  GGGTAAGGTTAAAATGCAAAAACGCACTGAAGCAGTCTCTTTTTTCGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGGTTAAAATGCAAAAACGCACTGAAGCAGTCTCTTTTTTCGTAG  150

seq1  GTCCTTTGGAGGACAAGCGAGATGAGACCTCCACCTCCAGGAAATGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGGAGGACAAGCGAGATGAGACCTCCACCTCCAGGAAATGGCTG  200

seq1  GTTTGAATTTTAGGTATGGAGTGCTGCCTAATGGATTTAGTATGCTTGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAATTTTAGGTATGGAGTGCTGCCTAATGGATTTAGTATGCTTGCG  250

seq1  CTACACCTAACATTCGGCCTCCAAGCTAGGGGGGAAGGGAGAAGACGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCTAACATTCGGCCTCCAAGCTAGGGGGGAAGGGAGAAGACGCCT  300

seq1  CTAGAGCTGCGGTACCCTTCTCAGGTGCCTACGACATTGAAAGAGGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCTGCGGTACCCTTCTCAGGTGCCTACGACATTGAAAGAGGGGCA  350

seq1  ATGAATTCGAAACCTATCCACACTGCCTTTCCCAGCACGATCTTCAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTCGAAACCTATCCACACTGCCTTTCCCAGCACGATCTTCAGGCT  400

seq1  TGGGGGTCGAAAGGCCCATCTAAAAGACACCCTGTGGGTTATTAATTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTCGAAAGGCCCATCTAAAAGACACCCTGTGGGTTATTAATTTGA  450

seq1  TCAGGGAGGCTGGCTCTTCAGGCTGGGGGAGGGGTGGGAATGGGAGGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAGGCTGGCTCTTCAGGCTGGGGGAGGGGTGGGAATGGGAGGCCC  500

seq1  CTGTCCTGGCGGCCCGAGTACCCCAACTCTCTGTCTCACCCCCAGGACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGCGGCCCGAGTACCCCAACTCTCTGTCTCACCCCCAGGACCT  550

seq1  GGAATTC  557
      |||||||
seq2  GGAATTC  557

seq1: chr1_77334888_77336049
seq2: B6Ng01-012I13.g_67_1233

seq1  GAATTCAAACACAAGTGGAACTGGGAACTTGGCTTGTCTCAGAATCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACACAAGTGGAACTGGGAACTTGGCTTGTCTCAGAATCAATA  50

seq1  AACTTGTCTCTATAATGAAAGACAAGAGTTGCTAGCCAGACCTATAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTCTCTATAATGAAAGACAAGAGTTGCTAGCCAGACCTATAAGGA  100

seq1  AAACATATCTGTTTTGTGTACTGCAGACCCCTGGTCCATGGACAATGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATCTGTTTTGTGTACTGCAGACCCCTGGTCCATGGACAATGTCA  150

seq1  CTGAATGAAGGCAGAGGCCCTCCTTGCCGGAAAGGCAAACTCTGACCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGAAGGCAGAGGCCCTCCTTGCCGGAAAGGCAAACTCTGACCTGA  200

seq1  GCCCAGGACCGCCTGGTTTTACCAAGTGCTCTCAGATGCCTGCCTTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGACCGCCTGGTTTTACCAAGTGCTCTCAGATGCCTGCCTTCAAA  250

seq1  AGACTGGCTGGTTTTTATCCACCGGTGATTGCTCTTAGCCATGCTGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCTGGTTTTTATCCACCGGTGATTGCTCTTAGCCATGCTGAAGC  300

seq1  CCGAGTAAGCTTTGCCAGTCACATCGCTAGGAATCGAGAGCCAATCAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTAAGCTTTGCCAGTCACATCGCTAGGAATCGAGAGCCAATCAAGA  350

seq1  CAGCATGATTGATGCTGATTTGCAGTTTACAAAAAGCAGGAAGAGTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGATTGATGCTGATTTGCAGTTTACAAAAAGCAGGAAGAGTGCAT  400

seq1  AATTTTCCATGTGATTTTTTTTCTTGTTTTTTTTTTTTTTCCAGAAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCATGTGATTTTTTTTCTTGTTTTTTTTTTTTTTCCAGAAACAC  450

seq1  ATCTGACCCTGGATAAGTTCATTTATCGAGGTTTATTTACTTGTGCTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACCCTGGATAAGTTCATTTATCGAGGTTTATTTACTTGTGCTGGC  500

seq1  CAGTTTCTTAAAAAGGGAGCCCAGTCTTTGTTGCAGAGTTTTTTTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTTAAAAAGGGAGCCCAGTCTTTGTTGCAGAGTTTTTTTAAAAA  550

seq1  ATCACTTTAAAATGGAGCAAGATAGATCTTTCAAAACAACAACAACAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTTAAAATGGAGCAAGATAGATCTTTCAAAACAACAACAACAAGT  600

seq1  CTAGATCCTTATACTATCTTAGTAAATTTAATTGATTTGTATAAGAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCCTTATACTATCTTAGTAAATTTAATTGATTTGTATAAGAGGAA  650

seq1  AACTATTTAGGAAAGAAACCAGAAAATCACATTACTGTGGTGACCTAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTAGGAAAGAAACCAGAAAATCACATTACTGTGGTGACCTAAGT  700

seq1  ATGAAATTTAAAGTTTAAAAATGTCAGTAAGCCAGATACATTTTAGCTTA  750
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTTAAAG-TTAAAAATGTCAGTAAGCCAGATACATTTTAGCTTA  749

seq1  TGAAAAGCACCATTCTCTACTTCTCCCCCTCTTGTCTTTCTTTGTTTCTT  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGAAAAGCACCATTCTCTACTTCTCCCCCTCTTGTCTTTCTTTGGTTCTT  799

seq1  TGTCTCTTTGTTTCTTTCTTTCTGTCTGTCTTTTTTATTTGTTGTTTGCT  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTCTCTTTGTTTCTTTCTTTCTGTCTGTCTTTTTTATTTGGTGTTTGCT  849

seq1  TGTACTGTTTGCTAAGTGAGAGTGTTATGTAGCCCAGGCTGCCCCT-GGA  899
      |||||||||||||||||||||||||||||||||||||||||| ||| | |
seq2  TGTACTGTTTGCTAAGTGAGAGTGTTATGTAGCCCAGGCTGCTCCTAGAA  899

seq1  TATACTATGTAGCT-AAGGGTGCCCTTGAGTTTTTGATGC-TCTCCTCTC  947
      |||||||||||||| |||||||| |||||||||||||||| |||| ||||
seq2  TATACTATGTAGCTAAAGGGTGCTCTTGAGTTTTTGATGCTTCTCTTCTC  949

seq1  -TATCTCCCAAGTGCTAGGACTATATCCTGTATCCACAGTACATGG-TTT  995
       ||||| | ||||||||||||||||| |||||| |||||| ||||| |||
seq2  TTATCTTCTAAGTGCTAGGACTATATTCTGTAT-CACAGT-CATGGTTTT  997

seq1  TATGAGGTGCTGAGGTTGAGCC-CAGCGCTTGTGCAGACTAAGCAGGCAC  1044
      ||||||| ||||| |||||||| ||||||||||| | |||||||||||||
seq2  TATGAGGGGCTGAAGTTGAGCCTCAGCGCTTGTG-AAACTAAGCAGGCAC  1046

seq1  -TCTACCAAGTGAACCCCATCCTCACGTCCCTGCTCCCTCCCTGAAAGGT  1093
       ||||| |||||||| | |||||||||| ||||||  || ||||||||| 
seq2  TTCTACAAAGTGAACTCTATCCTCACGTTCCTGCT-TCTTCCTGAAAGGA  1095

seq1  AT-CATTTTCCCATCTCCACT-CTGAGGA-TCT-GGAGAGG-CAACTGGA  1138
      || |||||  | |||| |||| |||| || ||| ||||||| ||| ||||
seq2  ATACATTT--CAATCT-CACTCCTGAAGATTCTGGGAGAGGCCAATTGGA  1142

seq1  GGTAGGTAGGA-AGGGGTTGGACCT  1162
      |||| ||| || |||||||||||||
seq2  GGTAAGTATGAGAGGGGTTGGACCT  1167