BAC Information

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BAC

Clone NameB6Ng01-013A12
Chromosome1 (Build37)
Map Location 102,502,357 - 102,667,294
singlet/doubletdoublet
Overlap genenone
Upstream geneC230078M14Rik, LOC633295, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013A12.bB6Ng01-013A12.g
ACCDH847955DH847956
length1,054777
definitionDH847955|Mus musculus domesticus DNA, BAC clone: B6Ng01-013A12, 5' end.DH847956|Mus musculus domesticus DNA, BAC clone: B6Ng01-013A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,666,219 - 102,667,294)(102,502,357 - 102,503,132)
sequence
gaattcttcctctgcaaagaatactgaatacctgtttccaaagtatttaa
atcttagtgttcatctggatgtgaggcttctgctgcatttggagtagaag
tctgacacctagtctcttgtgttagaatgttcaactgcagactctaccag
tgtccatacaggtagctttttcatctgctcagatctcacttcagcaaatg
acacggggagatgctgttatcctatggttctctgtaaatgtatacaccaa
ggaggaagcatgcttccctatgtggtctctagtacattcaccagtcatca
gccaggaagttctgagtttacaggccagtgaccattgacactgaatatgt
gatcaggttctctattctctggcaactttccagggatgtctggtcacctg
gcctatccatgccaagaatactattacctaaaatgtactatatccactct
gctgtttaggtacttcccatccactcagtgagattgtcattgctacacag
aactcattttgtactctgtacttacagctgtatagttgaacccagtcttc
ctccacttcagtgatcccttcactggtagtcctgaataaatatctctcca
tctctccgtctccctctccgtctgcttctccctctccctctccctgtccc
tgtccttccctctcctgctccccctgtgtctcttgctttctctacttctg
tctttctttttctttgtttatgtgcatgcatatgtgtctgtgcatacaga
tatgtatgctgatatgtattaggaatctggatcctagagaaatactcagt
tgtcatctcatatgtggcaactacattttcttgttattattattaaaaaa
attatacagtatttcttagcatgattttctatcccttatttcctctcatg
ttctccttctcttctgactacattcttctttctctttctgataaataaac
agcaaattgaaatcaaagataaacaattgaaaaaatctacagcaaaggaa
agaactagaagaatatgcacagagagaaagaaaaaatttttaatatccac
aaaa
gaattctttaacagagttttacaagggagtaagtcacgaggtccaactga
tccccaatgactcagacaacaggcaacctaagtatgtacatcatgagtgg
aaagcagaaaatatagaaagtaaaactagactcttaaaagctactgtaaa
gggtgaaagcaacaatttattgttatttagttttaccttctatatttgct
gctttccactcatgatgtacatactttttttttcaggtgagagccatgga
agaatatataactttacattgtagcagtacattcacttggattaaggtag
ttgctcagatagagaattaagggcaagtaatattaattgttgtattgttc
tcttgaaggcaaggtaaataacagattgaaaagaccatcagtgttaagtg
aactcaagttatattattaattctgtctgtcagatccagtcaacattcca
gtcttcttagtatataagatatattttcattgtattatgtcattacagaa
ttggattctccaaagaagacattttttgctcaagtcactcacattgagtc
atacttttaatcacactgctagaaaaggagagacagcaggaagcccaggg
ctttattgttctaccagcctacaggccagtgagagatttctgctcaaaaa
aaaagtaagctgcatattccctgaggaataaaattgagactatactattt
tcatctataagtatacacatacctatctccactgtcacacatgtatgctt
ttacacagatggtcatgtgagtacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_102666219_102667294
seq2: B6Ng01-013A12.b_46_1099 (reverse)

seq1  TTTTGTGGATAATTTAAAAAATTTTTTTCTTTCTCTCTGTGCATATTCTT  50
      |||||||||||  |||||||  ||||||||||||||||||||||||||||
seq2  TTTTGTGGATA--TTAAAAA--TTTTTTCTTTCTCTCTGTGCATATTCTT  46

seq1  TCTTAGTTTCTTTTCCCTTTTTGCTTGGTAGATTTTTTTCAATTTGTTTT  100
         |||||   |||||   ||||||  ||||| ||||||||| |||||| 
seq2  --CTAGTT--CTTTCC---TTTGCT--GTAGA-TTTTTTCAA-TTGTTT-  84

seq1  ATTCTTTGATTTTCAATTTGCCTGTTTATTTTATTCAGAAAGAGAAAGAA  150
        ||||||| |||||||||| ||||||||||   |||||||||||||| |
seq2  -ATCTTTGA-TTTCAATTTG-CTGTTTATTT--ATCAGAAAGAGAAAG-A  128

seq1  AGAATGTAGTCAGAAGAGAAGGAGAACATGAGAGGAAATAAGGGATAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTAGTCAGAAGAGAAGGAGAACATGAGAGGAAATAAGGGATAGAA  178

seq1  AATCATGCTAAGAAATACTGTATAATTTTTTTAATAATAATAACAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGCTAAGAAATACTGTATAATTTTTTTAATAATAATAACAAGAAA  228

seq1  ATGTAGTTGCCACATATGAGATGACAACTGAGTATTTCTCTAGGATCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTTGCCACATATGAGATGACAACTGAGTATTTCTCTAGGATCCAG  278

seq1  ATTCCTAATACATATCAGCATACATATCTGTATGCACAGACACATATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAATACATATCAGCATACATATCTGTATGCACAGACACATATGCA  328

seq1  TGCACATAAACAAAGAAAAAGAAAGACAGAAGTAGAGAAAGCAAGAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATAAACAAAGAAAAAGAAAGACAGAAGTAGAGAAAGCAAGAGACA  378

seq1  CAGGGGGAGCAGGAGAGGGAAGGACAGGGACAGGGAGAGGGAGAGGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGAGCAGGAGAGGGAAGGACAGGGACAGGGAGAGGGAGAGGGAGA  428

seq1  AGCAGACGGAGAGGGAGACGGAGAGATGGAGAGATATTTATTCAGGACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACGGAGAGGGAGACGGAGAGATGGAGAGATATTTATTCAGGACTA  478

seq1  CCAGTGAAGGGATCACTGAAGTGGAGGAAGACTGGGTTCAACTATACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAAGGGATCACTGAAGTGGAGGAAGACTGGGTTCAACTATACAGC  528

seq1  TGTAAGTACAGAGTACAAAATGAGTTCTGTGTAGCAATGACAATCTCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTACAGAGTACAAAATGAGTTCTGTGTAGCAATGACAATCTCACT  578

seq1  GAGTGGATGGGAAGTACCTAAACAGCAGAGTGGATATAGTACATTTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGATGGGAAGTACCTAAACAGCAGAGTGGATATAGTACATTTTAGG  628

seq1  TAATAGTATTCTTGGCATGGATAGGCCAGGTGACCAGACATCCCTGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTATTCTTGGCATGGATAGGCCAGGTGACCAGACATCCCTGGAAA  678

seq1  GTTGCCAGAGAATAGAGAACCTGATCACATATTCAGTGTCAATGGTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCAGAGAATAGAGAACCTGATCACATATTCAGTGTCAATGGTCACT  728

seq1  GGCCTGTAAACTCAGAACTTCCTGGCTGATGACTGGTGAATGTACTAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTAAACTCAGAACTTCCTGGCTGATGACTGGTGAATGTACTAGAG  778

seq1  ACCACATAGGGAAGCATGCTTCCTCCTTGGTGTATACATTTACAGAGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATAGGGAAGCATGCTTCCTCCTTGGTGTATACATTTACAGAGAAC  828

seq1  CATAGGATAACAGCATCTCCCCGTGTCATTTGCTGAAGTGAGATCTGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGATAACAGCATCTCCCCGTGTCATTTGCTGAAGTGAGATCTGAGC  878

seq1  AGATGAAAAAGCTACCTGTATGGACACTGGTAGAGTCTGCAGTTGAACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAAAGCTACCTGTATGGACACTGGTAGAGTCTGCAGTTGAACAT  928

seq1  TCTAACACAAGAGACTAGGTGTCAGACTTCTACTCCAAATGCAGCAGAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACACAAGAGACTAGGTGTCAGACTTCTACTCCAAATGCAGCAGAAG  978

seq1  CCTCACATCCAGATGAACACTAAGATTTAAATACTTTGGAAACAGGTATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACATCCAGATGAACACTAAGATTTAAATACTTTGGAAACAGGTATT  1028

seq1  CAGTATTCTTTGCAGAGGAAGAATTC  1076
      ||||||||||||||||||||||||||
seq2  CAGTATTCTTTGCAGAGGAAGAATTC  1054

seq1: chr1_102502357_102503132
seq2: B6Ng01-013A12.g_62_838

seq1  GAATTCTTTAACAGAGTTTTACAAGGGAGTAAGTCACGAGGTCCAACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAACAGAGTTTTACAAGGGAGTAAGTCACGAGGTCCAACTGA  50

seq1  TCCCCAATGACTCAGACAACAGGCAACCTAAGTATGTACATCATGAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAATGACTCAGACAACAGGCAACCTAAGTATGTACATCATGAGTGG  100

seq1  AAAGCAGAAAATATAGAAAGTAAAACTAGACTCTTAAAAGCTACTGTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAAAATATAGAAAGTAAAACTAGACTCTTAAAAGCTACTGTAAA  150

seq1  GGGTGAAAGCAACAATTTATTGTTATTTAGTTTTACCTTCTATATTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAAAGCAACAATTTATTGTTATTTAGTTTTACCTTCTATATTTGCT  200

seq1  GCTTTCCACTCATGATGTACATACTTTTTTTTTCAGGTGAGAGCCATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCACTCATGATGTACATACTTTTTTTTTCAGGTGAGAGCCATGGA  250

seq1  AGAATATATAACTTTACATTGTAGCAGTACATTCACTTGGATTAAGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATATAACTTTACATTGTAGCAGTACATTCACTTGGATTAAGGTAG  300

seq1  TTGCTCAGATAGAGAATTAAGGGCAAGTAATATTAATTGTTGTATTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGATAGAGAATTAAGGGCAAGTAATATTAATTGTTGTATTGTTC  350

seq1  TCTTGAAGGCAAGGTAAATAACAGATTGAAAAGACCATCAGTGTTAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAGGCAAGGTAAATAACAGATTGAAAAGACCATCAGTGTTAAGTG  400

seq1  AACTCAAGTTATATTATTAATTCTGTCTGTCAGATCCAGTCAACATTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGTTATATTATTAATTCTGTCTGTCAGATCCAGTCAACATTCCA  450

seq1  GTCTTCTTAGTATATAAGATATATTTTCATTGTATTATGTCATTACAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTAGTATATAAGATATATTTTCATTGTATTATGTCATTACAGAA  500

seq1  TTGGATTCTCCAAAGAAGACATTTTTTGCTCAAGTCACTCACATTGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTCTCCAAAGAAGACATTTTTTGCTCAAGTCACTCACATTGAGTC  550

seq1  ATACTTTTAATCACACTGCTAG-AAAGGAGAGACAGCAGGAAGCCCAGGG  599
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATACTTTTAATCACACTGCTAGAAAAGGAGAGACAGCAGGAAGCCCAGGG  600

seq1  CTTTATTGTTCTACCAGCCTACAGGCCAGTGAGAGA-TTCTGCTCAAAAA  648
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTTATTGTTCTACCAGCCTACAGGCCAGTGAGAGATTTCTGCTCAAAAA  650

seq1  AAAAGTAAGCTGCATATTCCCTGAGGAATAAAATTGAGACTATACTATTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAGCTGCATATTCCCTGAGGAATAAAATTGAGACTATACTATTT  700

seq1  TCAATCTATAAGTATACACATACCTATCTCCACTGTCACACATGTATGCT  748
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-ATCTATAAGTATACACATACCTATCTCCACTGTCACACATGTATGCT  749

seq1  TTTACACAGATGGTCATGTGAGTACACA  776
      ||||||||||||||||||||||||||||
seq2  TTTACACAGATGGTCATGTGAGTACACA  777