BAC Information

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BAC

Clone NameB6Ng01-013C12
Chromosome1 (Build37)
Map Location 89,662,862 - 89,777,985
singlet/doubletdoublet
Overlap geneAtg16l1, Sag
Upstream gene4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d
Downstream geneUsp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013C12.bB6Ng01-013C12.g
ACCDH848046DH848047
length1,166996
definitionDH848046|Mus musculus domesticus DNA, BAC clone: B6Ng01-013C12, 5' end.DH848047|Mus musculus domesticus DNA, BAC clone: B6Ng01-013C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,776,795 - 89,777,985)(89,662,862 - 89,663,859)
sequence
gaattcagtcctgcagagtccagccagttctaggggctgcctctattcct
ctccccactaacgtccaagccacagcccctacctccagtttatttcactg
tgccctctattctaagatgactctatctggaatccctgaaagaaagacta
acaactaagaaaaccttccccacccccaccaataggactaaaatagccat
ggctgtggtgagaacccttctagccatgctgccttgctccattcctcatt
tcagcacactaactctctagggatgcttatcattccagacttttcttttt
gcccgagtattagaactgccaccaacactgagccatgttaggccttccag
cctgcacactggggtttgaagttgacagcaacatcccagctgctcctctg
acacctgcctaaggagtccagctttgagtcttaacagggcaggaactcac
cacccagggccagcagctgggaagcctagagataaagacctacatatttt
tgttcacacactaagatgcccgatgaccagagtagctcttagcccataaa
aaagattcacgagcctgtggttcccatctttctgaaaggaagctaactgt
aatagagttagttatgtgaccatttttccattttcagagaaaggggaaag
gaacagaaataatttttatgaaaaataaagcatgcttagtgacaaataaa
atctgacacctactatttattacaagccagatgagatggggctatagttc
agtggtagactgtgaataccacatccaaggctctgtgttcaattccaaca
tgaccaaaacgaacagacgaacaaacaacaaacaaccctaccaggaaata
actggtatgcaagtatttatcctgtgcatgagtactgagctcctaatgag
gctcctgagaggtcctctaacagtgcctcacctttgcagtttagcatagt
aaagtgttcggccctcgaagcttaaagtactcctcttgatcgctggaacg
agtgtctgtttgtcagcatgctctttgaggatggtcttgaagcacaaagc
acactgtgagctgcattctgagtgccattgcctgaacagctgttgtactg
atgaccaagtgtgcccctaaggcagcagcttacgaagaacagtcttgttc
ctctctagaccttgac
gaattctattccagtacttgcagcctggcgctcttttctgagaagagcaa
gggtgatgcccttgagttcctaggtgctccacacctgcctgaggaagtga
tggcattctcagttctccttgaccactgtgtgcagtcaccaatgtcttcc
actagggggagggccacagtggccctatgaagcacatgcctattgggtgc
tggaagacacatttgtaagcagaaagattgtttactagcagacttagatt
cagtgccttagagcggtggagagatccttccaaggccctttgccacttgg
aaatgcctggagcttccccttccctcgggttctttttccccaaaaagcta
cagttactagccgtctgtggtcggtaggcgcttcatcctgggtaggagct
agatggaccaggtgtggtggccagtgttcccattgctgctccctcaagct
cggcccgctgctctgcctgcggttgccgggctctgatgagggaaagcgcc
tctcaaactgtactttcaggatttcggagtatttacagaccatctctgac
ctggagacaaactgcctggacctgcgcaccaaactgcaggacctcgaggt
agccaaccagaccctgaaggatgagtatgacgccctgcagattactttta
ctgccctagaagagaaactgaggaaaactactgaggagaaccaggaactg
gtcaccagatggatggctgagaaggcccaagaagccaatcgcctcaatgc
agagaatgagaaggactccaggtgggacatctagctgcagttagtggaca
agcagaacctggttctttgaaaagaaaaacctgcctggcagctgtcaggg
tggtagtgggtggtagaggaaccatgagccagacaacactagccaaggta
gcattgtgggaatcgaaaattttacttttgccagaacatctgcagctgat
ggaagaatcagttggatccgtgtccctcacaccctcctagttcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89776795_89777985
seq2: B6Ng01-013C12.b_45_1210 (reverse)

seq1  GTCAAGGTCTGTGAGA-GAACAAGAACTGTTCTTCTGGTAGGCTGCTTGG  49
      ||||||||||  |||| ||||||| ||||||||||  ||| ||||||   
seq2  GTCAAGGTCT-AGAGAGGAACAAG-ACTGTTCTTC--GTAAGCTGCT---  43

seq1  CCCCTTAGGGGCACAACCTTGTTCATCAGTCACAACAGGCTGTTTCAGGG  99
        |||||||||||||  |||| |||||||| |||||| |||| |||| ||
seq2  -GCCTTAGGGGCACA--CTTGGTCATCAGT-ACAACA-GCTG-TTCA-GG  86

seq1  CAATGGGCACCTCAGAAATGCAGCTCACAGTGTGCTTTTGTGCTTTCAGA  149
      |||| |||| ||||| ||||||||||||||||||| |||||||||  |||
seq2  CAAT-GGCA-CTCAG-AATGCAGCTCACAGTGTGC-TTTGTGCTTCAAGA  132

seq1  CCATCCTCAAAGAAGGCATGCTGACCAAACAGAACAACTCGTTCCAGCGA  199
      |||||||||||||  ||||||||| ||||||||   ||||||||||||||
seq2  CCATCCTCAAAGA--GCATGCTGA-CAAACAGA--CACTCGTTCCAGCGA  177

seq1  TCCAAGAGGAGGTACTTTAAGCTTCGAGGG-CGAACACTTTACTATGCTA  248
      | |||||||| ||||||||||||||||||| |||||||||||||||||| 
seq2  T-CAAGAGGA-GTACTTTAAGCTTCGAGGGCCGAACACTTTACTATGCT-  224

seq1  AAACTGCAAAGGTGAGGCACTGTTAGAGGACCTCCTCAGGAGCCTCATTA  298
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAACTGCAAAGGTGAGGCACTGTTAGAGGACCT-CTCAGGAGCCTCATTA  273

seq1  GGAGCTCAGTACTCATGCACAGGATAAATACTTGCATACCAGTTATTTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCAGTACTCATGCACAGGATAAATACTTGCATACCAGTTATTTCC  323

seq1  TGGTAGGGTTGTTTGTTGTTTGTTCGTCTGTTCGTTTTGGTCATGTTGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGGTTGTTTGTTGTTTGTTCGTCTGTTCGTTTTGGTCATGTTGGA  373

seq1  ATTGAACACAGAGCCTTGGATGTGGTATTCACAGTCTACCACTGAACTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACACAGAGCCTTGGATGTGGTATTCACAGTCTACCACTGAACTAT  423

seq1  AGCCCCATCTCATCTGGCTTGTAATAAATAGTAGGTGTCAGATTTTATTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCATCTCATCTGGCTTGTAATAAATAGTAGGTGTCAGATTTTATTT  473

seq1  GTCACTAAGCATGCTTTATTTTTCATAAAAATTATTTCTGTTCCTTTCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTAAGCATGCTTTATTTTTCATAAAAATTATTTCTGTTCCTTTCCC  523

seq1  CTTTCTCTGAAAATGGAAAAATGGTCACATAACTAACTCTATTACAGTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGAAAATGGAAAAATGGTCACATAACTAACTCTATTACAGTTA  573

seq1  GCTTCCTTTCAGAAAGATGGGAACCACAGGCTCGTGAATCTTTTTTATGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTTTCAGAAAGATGGGAACCACAGGCTCGTGAATCTTTTTTATGG  623

seq1  GCTAAGAGCTACTCTGGTCATCGGGCATCTTAGTGTGTGAACAAAAATAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAGCTACTCTGGTCATCGGGCATCTTAGTGTGTGAACAAAAATAT  673

seq1  GTAGGTCTTTATCTCTAGGCTTCCCAGCTGCTGGCCCTGGGTGGTGAGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTCTTTATCTCTAGGCTTCCCAGCTGCTGGCCCTGGGTGGTGAGTT  723

seq1  CCTGCCCTGTTAAGACTCAAAGCTGGACTCCTTAGGCAGGTGTCAGAGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCTGTTAAGACTCAAAGCTGGACTCCTTAGGCAGGTGTCAGAGGA  773

seq1  GCAGCTGGGATGTTGCTGTCAACTTCAAACCCCAGTGTGCAGGCTGGAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGGATGTTGCTGTCAACTTCAAACCCCAGTGTGCAGGCTGGAAG  823

seq1  GCCTAACATGGCTCAGTGTTGGTGGCAGTTCTAATACTCGGGCAAAAAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACATGGCTCAGTGTTGGTGGCAGTTCTAATACTCGGGCAAAAAGA  873

seq1  AAAGTCTGGAATGATAAGCATCCCTAGAGAGTTAGTGTGCTGAAATGAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTGGAATGATAAGCATCCCTAGAGAGTTAGTGTGCTGAAATGAGG  923

seq1  AATGGAGCAAGGCAGCATGGCTAGAAGGGTTCTCACCACAGCCATGGCTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGCAAGGCAGCATGGCTAGAAGGGTTCTCACCACAGCCATGGCTA  973

seq1  TTTTAGTCCTATTGGTGGGGGTGGGGAAGGTTTTCTTAGTTGTTAGTCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTCCTATTGGTGGGGGTGGGGAAGGTTTTCTTAGTTGTTAGTCTT  1023

seq1  TCTTTCAGGGATTCCAGATAGAGTCATCTTAGAATAGAGGGCACAGTGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGGGATTCCAGATAGAGTCATCTTAGAATAGAGGGCACAGTGAA  1073

seq1  ATAAACTGGAGGTAGGGGCTGTGGCTTGGACGTTAGTGGGGAGAGGAATA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTGGAGGTAGGGGCTGTGGCTTGGACGTTAGTGGGGAGAGGAATA  1123

seq1  GAGGCAGCCCCTAGAACTGGCTGGACTCTGCAGGACTGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCCCCTAGAACTGGCTGGACTCTGCAGGACTGAATTC  1166

seq1: chr1_89662862_89663859
seq2: B6Ng01-013C12.g_67_1062

seq1  GAATTCTATTCCAGTACTTGCAGCCTGGCGCTCTTTTCTGAGAAGAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTCCAGTACTTGCAGCCTGGCGCTCTTTTCTGAGAAGAGCAA  50

seq1  GGGTGATGCCCTTGAGTTCCTAGGTGCTCCACACCTGCCTGAGGAAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATGCCCTTGAGTTCCTAGGTGCTCCACACCTGCCTGAGGAAGTGA  100

seq1  TGGCATTCTCAGTTCTCCTTGACCACTGTGTGCAGTCACCAATGTCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTCTCAGTTCTCCTTGACCACTGTGTGCAGTCACCAATGTCTTCC  150

seq1  ACTAGGGGGAGGGCCACAGTGGCCCTATGAAGCACATGCCTATTGGGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGGGAGGGCCACAGTGGCCCTATGAAGCACATGCCTATTGGGTGC  200

seq1  TGGAAGACACATTTGTAAGCAGAAAGATTGTTTACTAGCAGACTTAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGACACATTTGTAAGCAGAAAGATTGTTTACTAGCAGACTTAGATT  250

seq1  CAGTGCCTTAGAGCGGTGGAGAGATCCTTCCAAGGCCCTTTGCCACTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCTTAGAGCGGTGGAGAGATCCTTCCAAGGCCCTTTGCCACTTGG  300

seq1  AAATGCCTGGAGCTTCCCCTTCCCTCGGGTTCTTTTTCCCCAAAAAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCTGGAGCTTCCCCTTCCCTCGGGTTCTTTTTCCCCAAAAAGCTA  350

seq1  CAGTTACTAGCCGTCTGTGGTCGGTAGGCGCTTCATCCTGGGTAGGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACTAGCCGTCTGTGGTCGGTAGGCGCTTCATCCTGGGTAGGAGCT  400

seq1  AGATGGACCAGGTGTGGTGGCCAGTGTTCCCATTGCTGCTCCCTCAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACCAGGTGTGGTGGCCAGTGTTCCCATTGCTGCTCCCTCAAGCT  450

seq1  CGGCCCGCTGCTCTGCCTGCGGTTGCCGGGCTCTGATGAGGGAAAGCGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCGCTGCTCTGCCTGCGGTTGCCGGGCTCTGATGAGGGAAAGCGCC  500

seq1  TCTCAAACTGTACTTTCAGGATTTCGGAGTATTTACAGACCATCTCTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACTGTACTTTCAGGATTTCGGAGTATTTACAGACCATCTCTGAC  550

seq1  CTGGAGACAAACTGCCTGGACCTGCGCACCAAACTGCAGGACCTCGAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGACAAACTGCCTGGACCTGCGCACCAAACTGCAGGACCTCGAGGT  600

seq1  AGCCAACCAGACCCTGAAGGATGAGTATGACGCCCTGCAGATTACTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACCAGACCCTGAAGGATGAGTATGACGCCCTGCAGATTACTTTTA  650

seq1  CTGCCCTAGAAGAGAAACTGAGGAAAACTACTGAGGAGAACCAGGAACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTAGAAGAGAAACTGAGGAAAACTACTGAGGAGAACCAGGAACTG  700

seq1  GTCACCAGATGGATGGCTGAGAAGGCCCAAGAAGCCAATCGCCTCAATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCAGATGGATGGCTGAGAAGGCCCAAGAAGCCAATCGCCTCAATGC  750

seq1  AGAGAATGAGAAGGACTCCAGGTGGGACATCTAGCTGCAGTTAGTGGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGAGAAGGACTCCAGGTGGGACATCTAGCTGCAGTTAGTGGACA  800

seq1  AGCAGAACCTGGTTCTTTGAAAAGAAAAACCTGCCTGGCAGCTGTCAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAACCTGGTTCTTTGAAAAGAAAAACCTGCCTGGCAGCTGTCAGGG  850

seq1  TGGTAGT-GGTGGTAGAGGAGCCATGAGCCAGAAAACACTAGCCAAAGTA  899
      ||||||| |||||||||||| |||||||||||| |||||||||||| |||
seq2  TGGTAGTGGGTGGTAGAGGAACCATGAGCCAGACAACACTAGCCAAGGTA  900

seq1  GCAATGTGGGAATCGGAGAAATTTACATTTGCAAGAACATCTGCAGCTGA  949
      ||| |||||||||| || || ||||| ||||| |||||||||||||||||
seq2  GCATTGTGGGAATC-GAAAATTTTACTTTTGCCAGAACATCTGCAGCTGA  949

seq1  TTGGAGATACAGTTAGGATCCGTGTCCCCTACTACCTCCTAATTTCATG  998
      | | |||  ||||| |||||||||||||  ||  |||||| | ||||||
seq2  TGGAAGAATCAGTT-GGATCCGTGTCCCTCACACCCTCCT-AGTTCATG  996