BAC Information

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BAC

Clone NameB6Ng01-014F04
Chromosome1 (Build37)
Map Location 105,766,649 - 105,849,441
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014F04.bB6Ng01-014F04.g
ACCDH848902DH848903
length1,095974
definitionDH848902|Mus musculus domesticus DNA, BAC clone: B6Ng01-014F04, 5' end.DH848903|Mus musculus domesticus DNA, BAC clone: B6Ng01-014F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,766,649 - 105,767,755)(105,848,881 - 105,849,441)
sequence
gaattcactaactttcccctctgtgaagcgaaaccacaaagccctcccat
taacatgatgacatgaagtatttggtgagtatctagaatgctattaacag
ttttctagagcacatgaaagacacacacaagaaaactaaggtctgaagat
gttacacacattagtgtacaccctccatgggccaatgctgactttggctt
tctggcccaggtgtctgttgcatgcacctgctgaatagagaattctattc
cttgtcatttcttccaagttgctcatatttctgtttttaactcatctcca
tgtggatgactgaaatcctgaaccatcattctttagggccttagcccctt
ctttctagataccctctcccttcaacattccccttttactgactgggttg
agttcaagttgggcttggtcctgaagaaaatgtgaaaagcaagtgatctc
tctagcaggtcacagcttgtcctctgtgcctacaccagtctaggctgatt
tcctctaatgggtaccaggcgtttaatccactatttgtatcccctttatt
ataacaatactgaacattctttatctcttttacttaatgctgttgactag
atatttaataggcagaaaacatacttgtcatttcagtccaaaattttatt
atacagatgaggagagaaaatctaacaaaaagacgtacccaagcaaggta
ggaggtggagactctacttgataccctaaacacctcattatttcatttag
tattctctctatctaactcttgcctccctccatatattattgttcattgt
tttcatggagacatggtctcattgtgtattgttggcttacttgaaactca
aaatgaagaccacaatggcctggaactcataaacaacagctgactttgct
ttctgaatgctggcattaaagttgtacactccatgtcctgtgacttccat
cttaaattgtgatatgcacaaaagtctaatgatgcatcactaccctaatg
ttctttatgttctgttatcatcttcatttctacacactctggataccctg
atctttttatatgttcatagtttgatttttaaagaaataaaattt
gaattctataagaaaacaagattacaacatcatgaaaagcaagccagcac
taatccatgacctttgtatcagatcctgcatccagtatcctgccctgttt
gagttcttattctgacctccttcattaatgaacagtgctgtggatttgca
agctaaaaaatgtctttcctttccaagtttctttgctcatggtgttttat
cacagcaaaagaatccctaactaagatacagtaaaagaaagcataaactg
gaatagaagggttaaatggagataggatggaagaggatgataagggagaa
aacctggggagggacagctaacactatgagactttgaggagttttatagg
aatttaccatgatgaatccttcctaaaatgtaatcatacgagcaaggagt
ccaaataaaaatcaccaaataatggcagagtcatatagtcaattaatccc
cttccttccggggaaatctctactgccaggaataggttacatcatcagca
atgagttacacctaaatgagttgttggtcaaaacagcctcataaaaatct
ccaaaaaattcaggttgttgaaaagactattaattgttcaccaaaaattg
ttaagtcccctattgctgatgaaaaaaccatatatctcattatagtaata
ggaacaagattgctggtgaccaatgtgctgttatatttttttcaatcact
taatatgatagacataaattttatattgtttcaaaagattttatgatttc
taaattaaaaaaaccaaatttgatttatgaattgttttctgtgtaatggc
tataagatatctgtctgtcttttgtcatttatctaatctaaactatccta
tctatctatctatctatcatctatctatctatctatctagcatctatcta
ctatcatcttggaatctgtgtcactcatctaagtattattctatcatatc
tatcatctatctatctatcatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_105766649_105767755
seq2: B6Ng01-014F04.b_49_1143

seq1  GAATTCACTAACTTTCCCCTCTGTGAAGCGAAACCACAAAGCCCTCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAACTTTCCCCTCTGTGAAGCGAAACCACAAAGCCCTCCCAT  50

seq1  TAACATGATGACATGAAGTATTTGGTGAGTATCTAGAATGCTATTAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGATGACATGAAGTATTTGGTGAGTATCTAGAATGCTATTAACAG  100

seq1  TTTTCTAGAGCACATGAAAGACACACACAAGAAAACTAAGGTCTGAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGAGCACATGAAAGACACACACAAGAAAACTAAGGTCTGAAGAT  150

seq1  GTTACACACATTAGTGTACACCCTCCATGGGCCAATGCTGACTTTGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACACATTAGTGTACACCCTCCATGGGCCAATGCTGACTTTGGCTT  200

seq1  TCTGGCCCAGGTGTCTGTTGCATGCACCTGCTGAATAGAGAATTCTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCCAGGTGTCTGTTGCATGCACCTGCTGAATAGAGAATTCTATTC  250

seq1  CTTGTCATTTCTTCCAAGTTGCTCATATTTCTGTTTTTAACTCATCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCATTTCTTCCAAGTTGCTCATATTTCTGTTTTTAACTCATCTCCA  300

seq1  TGTGGATGACTGAAATCCTGAACCATCATTCTTTAGGGCCTTAGCCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATGACTGAAATCCTGAACCATCATTCTTTAGGGCCTTAGCCCCTT  350

seq1  CTTTCTAGATACCCTCTCCCTTCAACATTCCCCTTTTACTGACTGGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGATACCCTCTCCCTTCAACATTCCCCTTTTACTGACTGGGTTG  400

seq1  AGTTCAAGTTGGGCTTGGTCCTGAAGAAAATGTGAAAAGCAAGTGATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGTTGGGCTTGGTCCTGAAGAAAATGTGAAAAGCAAGTGATCTC  450

seq1  TCTAGCAGGTCACAGCTTGTCCTCTGTGCCTACACCAGTCTAGGCTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAGGTCACAGCTTGTCCTCTGTGCCTACACCAGTCTAGGCTGATT  500

seq1  TCCTCTAATGGGTACCAGGCGTTTAATCCACTATTTGTATCCCCTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAATGGGTACCAGGCGTTTAATCCACTATTTGTATCCCCTTTATT  550

seq1  ATAACAATACTGAACATTCTTTATCTCTTTTACTTAATGCTGTTGACTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAATACTGAACATTCTTTATCTCTTTTACTTAATGCTGTTGACTAG  600

seq1  ATATTTAATAGGCAGAAAACATACTTGTCATTTCAGTCCAAAATTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAATAGGCAGAAAACATACTTGTCATTTCAGTCCAAAATTTTATT  650

seq1  ATACAGATGAGGAGAGAAAATCTAACAAAAAGACGTACCCAAGCAAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGATGAGGAGAGAAAATCTAACAAAAAGACGTACCCAAGCAAGGTA  700

seq1  GGAGGTGGAGACTCTACTTGATACCCTAAACACCTCATTATTTCATTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGAGACTCTACTTGATACCCTAAACACCTCATTATTTCATTTAG  750

seq1  TATTCTCTCTATCTAACTCTTGCCTCCCTCCATATATTATTGTTCATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCTCTATCTAACTCTTGCCTCCCTCCATATATTATTGTTCATTGT  800

seq1  TTTCATGGAGACATGGTCTCATTGTGTATTGTTGGCTTACTTGAAACTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGAGACATGGTCTCATTGTGTATTGTTGGCTTACTTGAAACTCA  850

seq1  AAATGAAGACCACAATGGCCTGGAACTCATAAACAACAGCTGACTTTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGACCACAATGGCCTGGAACTCATAAACAACAGCTGACTTTGCT  900

seq1  TTCTGAATGCTGGCATTAAAGTTGTACACTCCATGTCCTGTGACTTCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCTGAATGCTGGCATTAAAGTTGTACACTCCATGTCCTGTGACTTCCA-  949

seq1  TCTTAAATTGTGATATTGCACAAAAGTCTAATGATGCATCAACTACCCTA  1000
      ||||||||||||||| |||||||||||||||||||||||| |||||||| 
seq2  TCTTAAATTGTGATA-TGCACAAAAGTCTAATGATGCATC-ACTACCCT-  996

seq1  AATGTTCTTTATGTTCTGTTTATTCATTCTTCATTTCCTACACACTCTGG  1050
      ||||||||||||||||||||   ||| ||||||||| |||||||||||||
seq2  AATGTTCTTTATGTTCTGTT--ATCA-TCTTCATTT-CTACACACTCTGG  1042

seq1  ATACCCCTGATCTTTTTATTATGTTCATAGTTTTGATTTTTATAGAATAT  1100
      ||| |||||||||||||| ||||||||||| ||||||||||| |||| ||
seq2  ATA-CCCTGATCTTTTTA-TATGTTCATAG-TTTGATTTTTAAAGAA-AT  1088

seq1  AATATTT  1107
      || ||||
seq2  AAAATTT  1095

seq1: chr1_105848881_105849441
seq2: B6Ng01-014F04.g_482_1039 (reverse)

seq1  TAGATGATAGATAGATAGATGATAGATATGATAGAATAATAACTTAGATG  50
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGATGATAGATAGATAGATGATAGATATGATAGAATAAT-ACTTAGATG  49

seq1  AGTGACACAGATTTCCAAGATGATAGTAGATAGATAGATAGATAGATAGA  100
      ||||||||||| ||||||||||||||||||||||| | ||||||||||||
seq2  AGTGACACAGA-TTCCAAGATGATAGTAGATAGAT-GCTAGATAGATAGA  97

seq1  TAGATAGATAGATAGATAGATAGATAGATAGGATAGTTTAGATTAGATAA  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGAT-GATAGATAGATAGATAGATAGGATAGTTTAGATTAGATAA  146

seq1  ATGACAAAAGACAGACAGATATCTTATAGCCATTACACAGAAAACAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAAAGACAGACAGATATCTTATAGCCATTACACAGAAAACAATTC  196

seq1  ATAAATC-AATTTGGTTTTTTTAATTTAGAAATCATAAAATCTTTTGAAA  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCAAATTTGGTTTTTTTAATTTAGAAATCATAAAATCTTTTGAAA  246

seq1  CAATATAAAATTTATGTCTATCATTATTAAGTGATTG-AAAAAATATAAC  298
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  CAATATAAAATTTATGTCTATCA-TATTAAGTGATTGAAAAAAATATAAC  295

seq1  AGCACATTGGTCACCAGCAATCTTGTTCCTATTACTATAATGAGATATAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTGGTCACCAGCAATCTTGTTCCTATTACTATAATGAGATATAT  345

seq1  GGTTTTTTCATCAGCAATAGGGGACTTAACAATTTTTGGTGAACAATTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTCATCAGCAATAGGGGACTTAACAATTTTTGGTGAACAATTAA  395

seq1  TAGTCTTTTCAACAACCTGAATTTTTTGGAGATTTTTATGAGGCTGTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTTTCAACAACCTGAATTTTTTGGAGATTTTTATGAGGCTGTTTT  445

seq1  GACCAACAACTCATTTAGGTGTAACTCATTGCTGATGATGTAACCTATTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAACAACTCATTTAGGTGTAACTCATTGCTGATGATGTAACCTATTC  495

seq1  CTGGCAGTAGAGATTTCCCCGGAAGGAAGGGGATTAATTGACTATATGAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGTAGAGATTTCCCCGGAAGGAAGGGGATTAATTGACTATATGAC  545

seq1  TCTGCCATTATTT  561
      |||||||||||||
seq2  TCTGCCATTATTT  558