BAC Information

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BAC

Clone NameB6Ng01-014I08
Chromosome1 (Build37)
Map Location 81,910,117 - 82,032,793
singlet/doubletdoublet
Overlap genenone
Upstream gene9430031J16Rik, EG621020, LOC433328, EG665145
Downstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014I08.bB6Ng01-014I08.g
ACCDH849038DH849039
length1,137359
definitionDH849038|Mus musculus domesticus DNA, BAC clone: B6Ng01-014I08, 5' end.DH849039|Mus musculus domesticus DNA, BAC clone: B6Ng01-014I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,910,117 - 81,911,256)(82,032,435 - 82,032,793)
sequence
gaattccatttaaacagctttatgaatagagtacccttctttgttgatga
gtaaatttcaaaatatttcctgtggctttacattggaataatactggaaa
gaaatctgatatgacaaataaaaattcctgaatgaacaaaggtgagaatt
gtgttgcataggcgccatatcgccaaggtctgaagttgcttaatccaaga
gtataaagcttggactatgtcttcgatccctgtgaacaaaggctgaactc
tggaggaagtgggacagctgttgttcagctatgctgtgagaaaagaaaaa
tctctactgatttcacagggatgcacagtccacccttctcaggttatcag
caattcactcattccttaatgcctacctcagagcccattgttctcatcac
gacagctgttgaggcaccctcaagttatttagtttatgccttctgtatgc
agtcatcatgggtattttatcatgtaatttcatatgtaatacgctcccag
gttgtttttctttgttttgttttgtttttaatgtcctagctttctgtaaa
ttcttgcaaccaaatactcaaggataacaaattgggctaatcagcttgaa
accctcattttgggaggcactcactgcttattttttcccataatttatgt
ttttattcacattacaaccttgtcacatcccgtatttcttcctctccttc
cagttctacccttacaaatctctcccctattacctccttctcttctcttc
aaagagggggaagcccctcttgggtaccactccaacctgggccatctagt
tctagtacgtacgactaagcacctcctctcccactaaggcccaatcaaga
agccaggtagggaaagcagattcaatgtcaagcaacagagtctgagacag
ccccactccagttgttagaggacccacatgaagactaagctgcacatttg
atatgaatgtggacaggagctaggtccagcccctgcatgctctttggttg
gtggtcagtctctgtgagtccccatagtcccagttagtgactctgtatat
tcttttgtggtgttcttgaacccttcagctgctcaattctgcccgaatca
atccacaaactccctaagcttcacatccgaatgtttg
tctgatgctttccccttatcatttgttagtttatgagctacatgagaaat
aggggctgggacggtatagtgggtcagaactttagtacagcagacacaat
acatgtagagacgctcagagaacatgtatacatcttcacactgagcacaa
ccataaactccctcttaagttaggaaagagggtctccagcatcctgtgaa
gtatcaaagggcccttctcaggcgttctacaccataatggtaacaactcc
aacgtgttagttagcttttccagccagtatactttacagaaataagattc
atataaggtataattttttttgaatttttaagctcagtgtgtgtgtttgg
ggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_81910117_81911256
seq2: B6Ng01-014I08.b_42_1178

seq1  GAATTCCATTTAAACAGCTTTATGAATAGAGTACCCTTCTTTGTTGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTAAACAGCTTTATGAATAGAGTACCCTTCTTTGTTGATGA  50

seq1  GTAAATTTCAAAATATTTCCTGTGGCTTTACATTGGAATAATACTGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTTCAAAATATTTCCTGTGGCTTTACATTGGAATAATACTGGAAA  100

seq1  GAAATCTGATATGACAAATAAAAATTCCTGAATGAACAAAGGTGAGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTGATATGACAAATAAAAATTCCTGAATGAACAAAGGTGAGAATT  150

seq1  GTGTTGCATAGGCGCCATATCGCCAAGGTCTGAAGTTGCTTAATCCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCATAGGCGCCATATCGCCAAGGTCTGAAGTTGCTTAATCCAAGA  200

seq1  GTATAAAGCTTGGACTATGTCTTCGATCCCTGTGAACAAAGGCTGAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAGCTTGGACTATGTCTTCGATCCCTGTGAACAAAGGCTGAACTC  250

seq1  TGGAGGAAGTGGGACAGCTGTTGTTCAGCTATGCTGTGAGAAAAGAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAGTGGGACAGCTGTTGTTCAGCTATGCTGTGAGAAAAGAAAAA  300

seq1  TCTCTACTGATTTCACAGGGATGCACAGTCCACCCTTCTCAGGTTATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTGATTTCACAGGGATGCACAGTCCACCCTTCTCAGGTTATCAG  350

seq1  CAATTCACTCATTCCTTAATGCCTACCTCAGAGCCCATTGTTCTCATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCACTCATTCCTTAATGCCTACCTCAGAGCCCATTGTTCTCATCAC  400

seq1  GACAGCTGTTGAGGCACCCTCAAGTTATTTAGTTTATGCCTTCTGTATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTGTTGAGGCACCCTCAAGTTATTTAGTTTATGCCTTCTGTATGC  450

seq1  AGTCATCATGGGTATTTTATCATGTAATTTCATATGTAATACGCTCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCATGGGTATTTTATCATGTAATTTCATATGTAATACGCTCCCAG  500

seq1  GTTGTTTTTCTTTGTTTTGTTTTGTTTTTAATGTCCTAGCTTTCTGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTTCTTTGTTTTGTTTTGTTTTTAATGTCCTAGCTTTCTGTAAA  550

seq1  TTCTTGCAACCAAATACTCAAGGATAACAAATTGGGCTAATCAGCTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCAACCAAATACTCAAGGATAACAAATTGGGCTAATCAGCTTGAA  600

seq1  ACCCTCATTTTGGGAGGCACTCACTGCTTATTTTTTCCCATAATTTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCATTTTGGGAGGCACTCACTGCTTATTTTTTCCCATAATTTATGT  650

seq1  TTTTATTCACATTACAACCTTGTCACATCCCGTATTTCTTCCTCTCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCACATTACAACCTTGTCACATCCCGTATTTCTTCCTCTCCTTC  700

seq1  CAGTTCTACCCTTACAAATCTCTCCCCTATTACCTCCTTCTCTTCTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTACCCTTACAAATCTCTCCCCTATTACCTCCTTCTCTTCTCTTC  750

seq1  AAAGAGGGGGAAGCCCCTCTTGGGTACCACTCCAACCTGGGCCATCTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGGGGAAGCCCCTCTTGGGTACCACTCCAACCTGGGCCATCTAGT  800

seq1  TCTAGTACGTACGACTAAGCACCTCCTCTCCCACTAAGGCCCAATCAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTACGTACGACTAAGCACCTCCTCTCCCACTAAGGCCCAATCAAGA  850

seq1  AGCCAGGTAGGGAAAGCAGATTCAATGTCAAGCAACAGAGTCTGAGACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGTAGGGAAAGCAGATTCAATGTCAAGCAACAGAGTCTGAGACAG  900

seq1  CCCCACTCCAGTTGTTAGAGGACCCACATGAAGACTAAGCTGCACATTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCCAGTTGTTAGAGGACCCACATGAAGACTAAGCTGCACATTTG  950

seq1  ATATGAATGTGGACAGGGAGCTAGGTCCAGCCCCTGCATGCTCTTTGGTT  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATATGAATGTGGACA-GGAGCTAGGTCCAGCCCCTGCATGCTCTTTGGTT  999

seq1  GGTGGTTCAGTCTCTGTGAGTCCCCATAGTCCCAGGTTAGTTGACTCTGT  1050
      ||||| |||||||||||||||||||||||||||| ||||| |||||||||
seq2  GGTGG-TCAGTCTCTGTGAGTCCCCATAGTCCCA-GTTAG-TGACTCTGT  1046

seq1  ATATCTTTTTGTGGTGTTCTTGACCCCTTCAGCCTGCTCAATTCTGCCCC  1100
      ||||  ||||||||||||||||| |||||||| ||||||||||||| |||
seq2  ATATTCTTTTGTGGTGTTCTTGAACCCTTCAG-CTGCTCAATTCTG-CCC  1094

seq1  GAATC-ATCCACAAAACTCCCTAAGCT--CCATCCG-ATGTTTG  1140
      ||||| |||||| ||||||||||||||   |||||| |||||||
seq2  GAATCAATCCAC-AAACTCCCTAAGCTTCACATCCGAATGTTTG  1137

seq1: chr1_82032435_82032793
seq2: B6Ng01-014I08.g_72_430 (reverse)

seq1  CCCCCCCCCCCAAACACACACACTGAGCTTAAAAATTCAAAAAAAATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCAAACACACACACTGAGCTTAAAAATTCAAAAAAAATTAT  50

seq1  ACCTTATATGAATCTTATTTCTGTAAAGTATACTGGCTGGAAAAGCTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATATGAATCTTATTTCTGTAAAGTATACTGGCTGGAAAAGCTAAC  100

seq1  TAACACGTTGGAGTTGTTACCATTATGGTGTAGAACGCCTGAGAAGGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACGTTGGAGTTGTTACCATTATGGTGTAGAACGCCTGAGAAGGGCC  150

seq1  CTTTGATACTTCACAGGATGCTGGAGACCCTCTTTCCTAACTTAAGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATACTTCACAGGATGCTGGAGACCCTCTTTCCTAACTTAAGAGGG  200

seq1  AGTTTATGGTTGTGCTCAGTGTGAAGATGTATACATGTTCTCTGAGCGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATGGTTGTGCTCAGTGTGAAGATGTATACATGTTCTCTGAGCGTC  250

seq1  TCTACATGTATTGTGTCTGCTGTACTAAAGTTCTGACCCACTATACCGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATGTATTGTGTCTGCTGTACTAAAGTTCTGACCCACTATACCGTC  300

seq1  CCAGCCCCTATTTCTCATGTAGCTCATAAACTAACAAATGATAAGGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCTATTTCTCATGTAGCTCATAAACTAACAAATGATAAGGGGAA  350

seq1  AGCATCAGA  359
      |||||||||
seq2  AGCATCAGA  359