BAC Information

Click to search

BAC

Clone NameB6Ng01-014M09
Chromosome1 (Build37)
Map Location 80,727,937 - 80,729,017
singlet/doubletsinglet
Overlap geneDock10
Upstream geneWdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik
Downstream geneLOC665092, 9430031J16Rik, EG621020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014M09.bB6Ng01-014M09.g
ACCDH849221DH849222
length1,081908
definitionDH849221|Mus musculus domesticus DNA, BAC clone: B6Ng01-014M09, 5' end.DH849222|Mus musculus domesticus DNA, BAC clone: B6Ng01-014M09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatctgcctccactttacttgcaaattaaagacaattccttaat
cctttaatgtatttataaggtaacatgtgttttctctgttttatactcca
tggctgaaaaaccagaatgtcaagaggactctaattttacatcagataag
ccaaacgagtttctggaacataccaaagctgacaattggtgctcacttat
ctcattcaatacctgtaacgaattactataataatgtgagccatggtgga
gcagtgctctgcagacaacgcaactcatcccttgtcttttaaaaataatc
ttcgtaaaacacacacacaaattagctgtggtgactatggcctccatttt
taccgaaagaaggttgcagctgtttacggttctgctgttaaaggacatca
cctggaagccctggacatgcaagaaagcatagacatgtagtctcctgacc
agctacaatagggttaaatgaaatctcagtcctgatcaatacctggagtt
aactcacatcagacactgtgcacttcattgtcttgttaagatcaaactct
tcttctttctaccccaaaagcagaatgtttagctctcaatagaaaaagaa
cctggtggatgaaggggatcagcagagtctgctaactgcaaatatccctt
gatttctcagaagtagatttattgttgcttttatgggatactcgagtggt
ggcaattcttgccaatctccaaaataggtctctagtttcttattctcttt
tctgtggacttcagtaagctgccacttagacaatagcaaaatttagtaat
tcaaaatttcccagaggtcagccagaataaaaaaatattaatttgtagta
acaaatatgaaatacagcttaaagctcaacagagggggaaaatgtcgaac
ggctgaaggaaaaatttcccatattaattgtacactttaaactgtcttat
tttttgtcacctagaattattttatgatgtcatttatttcccttaggcat
agcagatgtcagggccagtccaaaaaacttttcttaggtatcttttggat
taagaaaaattttgagaatagactttggata

gaattctttgctttttccatctatggtaattgagagtttggctgggtata
gtagcctaggctggcatttgtgttctcttagtgtctgtataacatctgtc
caggctcttctggctttcatagtctctggtgaaaagtctggtgtaattct
gataggcctttctttatatgttacttgacctttctcccttactgctttta
atattctctctttatttagtgcatttgttgttttgattattatgtgtcgg
aaggaatttcttttctggtccagtctatttggagttctgtaggcttcttg
tatgttcatgggcatgttattctctaggtttgggaagttttcttctatga
ttttgttgaagatattttctggtcctttaagttgaaaatcttcattttca
tcaactcctattatccgtaggtttggtcttctcattgtgtcctggatttc
ctggatattttgagttaggatctttttgcatattccattttctttgattg
ttgtgccgatgttctctatggaatcttctgcacctgagattctctcttcc
atctcttgttttctgtttgctgatgctcgcatctatggttccagatttct
ttcctaggttttctatctccagctttgcctcactttgggttttctttatt
gtgtctacttccctttttatgtcttagatggttttattcaattccatcac
ctgtttggtcgtgttttcctgcaattctttaggaatttttgtgtttcctc
tttaaagtcttctacctgtttagctgtgttctcctgtatttctttaatga
gttattaaagtccttcttgatgtcctctaccatcatcatgagatatgctt
ttaatccgggtcttgcttttttgggtgtgttggggtgcccagacaagtgg
ggtggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_80727937_80729017
seq2: B6Ng01-014M09.b_43_1123

seq1  GAATTCCATCTGCCTCCACTTTACTTGCAAATTAAAGACAATTCCTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTGCCTCCACTTTACTTGCAAATTAAAGACAATTCCTTAAT  50

seq1  CCTTTAATGTATTTATAAGGTAACATGTGTTTTCTCTGTTTTATACTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATGTATTTATAAGGTAACATGTGTTTTCTCTGTTTTATACTCCA  100

seq1  TGGCTGAAAAACCAGAATGTCAAGAGGACTCTAATTTTACATCAGATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAAAAACCAGAATGTCAAGAGGACTCTAATTTTACATCAGATAAG  150

seq1  CCAAACGAGTTTCTGGAACATACCAAAGCTGACAATTGGTGCTCACTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACGAGTTTCTGGAACATACCAAAGCTGACAATTGGTGCTCACTTAT  200

seq1  CTCATTCAATACCTGTAACGAATTACTATAATAATGTGAGCCATGGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCAATACCTGTAACGAATTACTATAATAATGTGAGCCATGGTGGA  250

seq1  GCAGTGCTCTGCAGACAACGCAACTCATCCCTTGTCTTTTAAAAATAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCTCTGCAGACAACGCAACTCATCCCTTGTCTTTTAAAAATAATC  300

seq1  TTCGTAAAACACACACACAAATTAGCTGTGGTGACTATGGCCTCCATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTAAAACACACACACAAATTAGCTGTGGTGACTATGGCCTCCATTTT  350

seq1  TACCGAAAGAAGGTTGCAGCTGTTTACGGTTCTGCTGTTAAAGGACATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGAAAGAAGGTTGCAGCTGTTTACGGTTCTGCTGTTAAAGGACATCA  400

seq1  CCTGGAAGCCCTGGACATGCAAGAAAGCATAGACATGTAGTCTCCTGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGCCCTGGACATGCAAGAAAGCATAGACATGTAGTCTCCTGACC  450

seq1  AGCTACAATAGGGTTAAATGAAATCTCAGTCCTGATCAATACCTGGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAATAGGGTTAAATGAAATCTCAGTCCTGATCAATACCTGGAGTT  500

seq1  AACTCACATCAGACACTGTGCACTTCATTGTCTTGTTAAGATCAAACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACATCAGACACTGTGCACTTCATTGTCTTGTTAAGATCAAACTCT  550

seq1  TCTTCTTTCTACCCCAAAAGCAGAATGTTTAGCTCTCAATAGAAAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTCTACCCCAAAAGCAGAATGTTTAGCTCTCAATAGAAAAAGAA  600

seq1  CCTGGTGGATGAAGGGGATCAGCAGAGTCTGCTAACTGCAAATATCCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGGATGAAGGGGATCAGCAGAGTCTGCTAACTGCAAATATCCCTT  650

seq1  GATTTCTCAGAAGTAGATTTATTGTTGCTTTTATGGGATACTCGAGTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCAGAAGTAGATTTATTGTTGCTTTTATGGGATACTCGAGTGGT  700

seq1  GGCAATTCTTGCCAATCTCCAAAATAGGTCTCTAGTTTCTTTATTCTCTT  750
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGCAATTCTTGCCAATCTCCAAAATAGGTCTCTAGTTTC-TTATTCTCTT  749

seq1  TTCTGTGGACTTCAGTAAGCTGCCACTTAGACAATAGCAAAAATTTAGTA  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCTGTGGACTTCAGTAAGCTGCCACTTAGACAATAGC-AAAATTTAGTA  798

seq1  ATTCAAAATTTCCCAGAGGTCAGCCAGAATAAAAAAATATT-ATTTGTAG  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTCAAAATTTCCCAGAGGTCAGCCAGAATAAAAAAATATTAATTTGTAG  848

seq1  TAACAAATATGAAATACAGCTTAAAGGCTCAACAGAGGGGGAAAAATGTC  899
      ||||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  TAACAAATATGAAATACAGCTTAAA-GCTCAACAGAGGGGG-AAAATGTC  896

seq1  G-ACAGCTGAAGGAAAAAATTCCCCATATTAATTGTACACTTTAAACTGT  948
      | || |||||||| ||||||| ||||||||||||||||||||||||||||
seq2  GAACGGCTGAAGG-AAAAATTTCCCATATTAATTGTACACTTTAAACTGT  945

seq1  CTTATTCTTTGTCA-CTAGGAATATTTTATGATGTCATTTATT--CCCTA  995
      |||||| ||||||| |||| | |||||||||||||||||||||  || ||
seq2  CTTATTTTTTGTCACCTAGAATTATTTTATGATGTCATTTATTTCCCTTA  995

seq1  GGCATAGCAGATGTCAGGG-CAGTCC-AAAAACTTTTCTTAAGTATCTTT  1043
      ||||||||||||||||||| |||||| |||||||||||||| ||||||||
seq2  GGCATAGCAGATGTCAGGGCCAGTCCAAAAAACTTTTCTTAGGTATCTTT  1045

seq1  TGGAATTAAAGAAAAATTTTGAG-ATAGAATTTTGGATA  1081
      ||||  | ||||||||||||||| |||| | ||||||||
seq2  TGGA--TTAAGAAAAATTTTGAGAATAG-ACTTTGGATA  1081


| Home | SequenceCutter | Blast | Download |