BAC Information

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BAC

Clone NameB6Ng01-015K07
Chromosome1 (Build37)
Map Location 48,469,991 - 48,586,123
singlet/doubletdoublet
Overlap geneLOC674566
Upstream geneLOC666869, LOC546734
Downstream geneLOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015K07.bB6Ng01-015K07.g
ACCDH849843DH849844
length922946
definitionDH849843|Mus musculus domesticus DNA, BAC clone: B6Ng01-015K07, 5' end.DH849844|Mus musculus domesticus DNA, BAC clone: B6Ng01-015K07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,469,991 - 48,470,761)(48,585,511 - 48,586,123)
sequence
gaattctcctcaatatttacaaatcctacactagcgcagttctaagttca
acattaccaccttagcatttcttcttgatatggactccgatttttctaga
tttgaatttcctttctggatatgtacaatgatcatagaaaaacacaaatt
aagaactgttgtagttcttaatcacagacagcagtgtaggatctgttctt
ctaatataaaattgacaggaaatagccaatatgttaacatgtgtgctgta
ttcaagataaaaaccttgataaacccgggcttccttgccagcggagttgc
ctgaaaccagcaagggcccacacaggattccccacgggatcctaagacct
ctgttgagtggaacacagctccggccccaatccaatcacacggaacctga
gactgcagtacatagggaagcagactacccgggcctgacctggggcacaa
ggcccttcccctccactcgagccccgggctaccttgccagcggagtcacg
tgacacccgcaagggcccacacaggattccacaagggatcctaagacctc
tagtgagtggaacacaacttctgccaggagtccggttcgaacaccagata
tctgggtacctgccctgcaagaagagagctttcctgcagagaatactcta
cccactgaaactaagaagagtgctaccctcccaggtctgcttatagaggc
taacagagtcacctgaagaacaagctcttaacagagacaactataacagc
tagcttcagagattaccagatggcgaaaggcaaacgtaagaatcctacta
acagaaatctagaccattcaccatcatcagaacgcagcactcccacccca
cctagtcctgggcaccccaacacaaccgaaaatctagacccagatttaaa
atatttctcatgatgatgatag
gaattccagtatgtgactgttgtggatgatatttgccgcaacatgtgaca
aagaatatacattgatcacagttattttttttttaaagaggcaataaact
attttacctaatatcatttcatctattaaaacagttacctaatgagtaac
attatttaatacaaattgatgatcagggcttgaaactcacacaattattt
gtatattcaacttagagtctcctaaatcaatactgtacaaatcttttcat
gtgatttcttagtatagaagtattctataaatgtttatggataatatgaa
tagtttaattgaaaatacaatttcttgacttgagagaaggattgaaacac
agtgagagattgttataacataaaaaattaatgtctgacatgtttcttta
ttttgtgactactcttatgtttattaacaaaaggggcaattacactcatc
cattccaagtatactgaggagccttaacactgacaataccgactcttccc
tgtagaattaaatgctaataaataaatccgggcagcaggtttgccaccca
cctcagtggtttgtgttcctaaatgaaagacacacacacacacaccacac
acacatacacacacacacacacacacacacacacacacacacacatacac
acacacacaccctttatattttgatataccttaatcagcagcaagagctg
agctactgcctaacctcaactattgatagagtcttattcccgccaataat
tccaatttacaacttactaaattctgtgttctatcttggctgctctgaac
ccagagggcttgcccaattgtgctgctctctggactgtgttcttgtggct
cctttgcaggaatcgtaaccatgtctctgtctgtattcatctcagcattt
caagtctcctcattctctggcaaggtggatctccttcccctacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_48469991_48470761
seq2: B6Ng01-015K07.b_47_817

seq1  GAATTCTCCTCAATATTTACAAATCCTACACTAGCGCAGTTCTAAGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCAATATTTACAAATCCTACACTAGCGCAGTTCTAAGTTCA  50

seq1  ACATTACCACCTTAGCATTTCTTCTTGATATGGACTCCGATTTTTCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACCACCTTAGCATTTCTTCTTGATATGGACTCCGATTTTTCTAGA  100

seq1  TTTGAATTTCCTTTCTGGATATGTACAATGATCATAGAAAAACACAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTTCCTTTCTGGATATGTACAATGATCATAGAAAAACACAAATT  150

seq1  AAGAACTGTTGTAGTTCTTAATCACAGACAGCAGTGTAGGATCTGTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTGTTGTAGTTCTTAATCACAGACAGCAGTGTAGGATCTGTTCTT  200

seq1  CTAATATAAAATTGACAGGAAATAGCCAATATGTTAACATGTGTGCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATAAAATTGACAGGAAATAGCCAATATGTTAACATGTGTGCTGTA  250

seq1  TTCAAGATAAAAACCTTGATAAACCCGGGCTTCCTTGCCAGCGGAGTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGATAAAAACCTTGATAAACCCGGGCTTCCTTGCCAGCGGAGTTGC  300

seq1  CTGAAACCAGCAAGGGCCCACACAGGATTCCCCACGGGATCCTAAGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCAGCAAGGGCCCACACAGGATTCCCCACGGGATCCTAAGACCT  350

seq1  CTGTTGAGTGGAACACAGCTCCGGCCCCAATCCAATCACACGGAACCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGTGGAACACAGCTCCGGCCCCAATCCAATCACACGGAACCTGA  400

seq1  GACTGCAGTACATAGGGAAGCAGACTACCCGGGCCTGACCTGGGGCACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAGTACATAGGGAAGCAGACTACCCGGGCCTGACCTGGGGCACAA  450

seq1  GGCCCTTCCCCTCCACTCGAGCCCCGGGCTACCTTGCCAGCGGAGTCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTCCCCTCCACTCGAGCCCCGGGCTACCTTGCCAGCGGAGTCACG  500

seq1  TGACACCCGCAAGGGCCCACACAGGATTCCACAAGGGATCCTAAGACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCCGCAAGGGCCCACACAGGATTCCACAAGGGATCCTAAGACCTC  550

seq1  TAGTGAGTGGAACACAACTTCTGCCAGGAGTCCGGTTCGAACACCAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGTGGAACACAACTTCTGCCAGGAGTCCGGTTCGAACACCAGATA  600

seq1  TCTGGGTACCTGCCCTGCAAGAAGAGAGCTTTCCTGCAGAGAATACTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTACCTGCCCTGCAAGAAGAGAGCTTTCCTGCAGAGAATACTCTA  650

seq1  CCCACTGAAACTAAGAAGAGTGCTACCCTCCCAGGTCTGCTTATAGAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGAAACTAAGAAGAGTGCTACCCTCCCAGGTCTGCTTATAGAGGC  700

seq1  TAACAGAGTCACCTGAAGAACAAGCTCTTAACAGAGACAACTATAACAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAGTCACCTGAAGAACAAGCTCTTAACAGAGACAACTATAACAGC  750

seq1  TAGCTTCAGAGATTACCAGAT  771
      |||||||||||||||||||||
seq2  TAGCTTCAGAGATTACCAGAT  771

seq1: chr1_48585511_48586123
seq2: B6Ng01-015K07.g_70_682 (reverse)

seq1  TGTGTGTATGTGTGTGTGGTGTGTGTGTGTGTGTCTTTCATTTAGGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGTGTGTGTGGTGTGTGTGTGTGTGTCTTTCATTTAGGAACA  50

seq1  CAAACCACTGAGGTGGGTGGCAAACCTGCTGCCCGGATTTATTTATTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCACTGAGGTGGGTGGCAAACCTGCTGCCCGGATTTATTTATTAGC  100

seq1  ATTTAATTCTACAGGGAAGAGTCGGTATTGTCAGTGTTAAGGCTCCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTCTACAGGGAAGAGTCGGTATTGTCAGTGTTAAGGCTCCTCAG  150

seq1  TATACTTGGAATGGATGAGTGTAATTGCCCCTTTTGTTAATAAACATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTGGAATGGATGAGTGTAATTGCCCCTTTTGTTAATAAACATAAG  200

seq1  AGTAGTCACAAAATAAAGAAACATGTCAGACATTAATTTTTTATGTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCACAAAATAAAGAAACATGTCAGACATTAATTTTTTATGTTATA  250

seq1  ACAATCTCTCACTGTGTTTCAATCCTTCTCTCAAGTCAAGAAATTGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTCTCACTGTGTTTCAATCCTTCTCTCAAGTCAAGAAATTGTATT  300

seq1  TTCAATTAAACTATTCATATTATCCATAAACATTTATAGAATACTTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTAAACTATTCATATTATCCATAAACATTTATAGAATACTTCTAT  350

seq1  ACTAAGAAATCACATGAAAAGATTTGTACAGTATTGATTTAGGAGACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAAATCACATGAAAAGATTTGTACAGTATTGATTTAGGAGACTCT  400

seq1  AAGTTGAATATACAAATAATTGTGTGAGTTTCAAGCCCTGATCATCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAATATACAAATAATTGTGTGAGTTTCAAGCCCTGATCATCAATT  450

seq1  TGTATTAAATAATGTTACTCATTAGGTAACTGTTTTAATAGATGAAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAAATAATGTTACTCATTAGGTAACTGTTTTAATAGATGAAATGA  500

seq1  TATTAGGTAAAATAGTTTATTGCCTCTTTAAAAAAAAAATAACTGTGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGTAAAATAGTTTATTGCCTCTTTAAAAAAAAAATAACTGTGATC  550

seq1  AATGTATATTCTTTGTCACATGTTGCGGCAAATATCATCCACAACAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATATTCTTTGTCACATGTTGCGGCAAATATCATCCACAACAGTCA  600

seq1  CATACTGGAATTC  613
      |||||||||||||
seq2  CATACTGGAATTC  613