BAC Information

Click to search

BAC

Clone NameB6Ng01-015P19
Chromosome1 (Build37)
Map Location 85,181,359 - 85,294,829
singlet/doubletdoublet
Overlap geneLOC100040158, LOC621835, EG665378, C130026I21Rik
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742
Downstream geneLOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015P19.bB6Ng01-015P19.g
ACCDH850096DH850097
length224983
definitionDH850096|Mus musculus domesticus DNA, BAC clone: B6Ng01-015P19, 5' end.DH850097|Mus musculus domesticus DNA, BAC clone: B6Ng01-015P19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,181,359 - 85,181,604)(85,293,848 - 85,294,829)
sequence
ttagctcaaatatctcttccctccctgactgtcctagtccctcagctccc
agagatccttcttaaactgtatgagataggttctgtatgctggcaaccac
aacacatgcctttaatccaaacatttctgaggcagagggaggtgaatctc
tgagttcaagacccctacagtaaaatggccaggatacaggagcaggaaaa
aaaggaggaggaggaggaggagga
gaattctggccatttagaagtttcagaaattaaaactacagttagaaacc
tgaattattcttttcctctgagaaggtcaaagattatagctgagaatgtc
tgctgggtagctaagtaatgacatgtacttacactggtggagagaaatta
tttaaaaaattatttttattatttagtgtgtgattttgctgcatgcatat
atgcatcatgtgtgtgcagtaacctaggagaccaggagaggacattggat
cccataggactgcagttatatatggtggtactgtagatgctggaaattga
acctgggttctctgtaagaatagccagtgctcttaatcactgaggtatct
ctcctgtaccaccagagtattcctaagggataagaggaccatgtgatgac
gggtctggccttgaggacattggaaaagactgagccataaggcttcctgc
ctccaagtgaggagctctctgataaaaggttggaggatactatagaggga
gctgctgaaggagagggtggaggtggagtaagaaccatctaccagaggca
agcatccaaagaggtgaactctgagttctgtaagaaagaatgagtaagca
ccaattttcctacccaacacacaaacgtgtagctcagactttattttttt
aaaaccttacttttaaaatgggtttcttaaatactttaactcccccttct
agccctccacccaccagaggtagtggaaaagaaaggttatgaggatacag
ggtagttgggacctgttttagaaatagttcttttggagcaaaatcccatc
tgcgttgtcaggaactcagcagttcagtttcacaggaatcagcagaggct
gctccatccacttgaaaacacttcacgaatatagttagcagtccagctca
gtgtgtcaggaaagcaaacacagtcctacacagatgagactcacctgtga
gtctgttttagcaaaactccaggtaagtctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85181359_85181604
seq2: B6Ng01-015P19.b_53_276

seq1  TTAGCTCAAACATCTCTTCCCTCCCTGACTGTCCTAGTCCCTCAGCTCCC  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCAAATATCTCTTCCCTCCCTGACTGTCCTAGTCCCTCAGCTCCC  50

seq1  AGAGATCCTTCTTAAACTGTATGAGATTGGTTCTGTATGCTGGCAACCAC  100
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAGATCCTTCTTAAACTGTATGAGATAGGTTCTGTATGCTGGCAACCAC  100

seq1  AGCACATGCCTTTAATCCAAACATTTCTGAGGCAGAGGGAGGTGAATCTC  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGCCTTTAATCCAAACATTTCTGAGGCAGAGGGAGGTGAATCTC  150

seq1  TGATTTCAAGACCTCTACAGTAAAATGGCCAGGATACAGGAGCAGGAAAA  200
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAAGACCCCTACAGTAAAATGGCCAGGATACAGGAGCAGGAAAA  200

seq1  AAAGGAGGAGAAGAAGGAGGGAGGAGGAGAAGGAGGAGGAGGAGGA  246
      |||||||||| || |||| ||||||                     
seq2  AAAGGAGGAGGAGGAGGA-GGAGGA---------------------  224

seq1: chr1_85293848_85294829
seq2: B6Ng01-015P19.g_68_1049 (reverse)

seq1  ACAGACTCACATGGAGTTTTGCT-AAACAGACTCACATGGTGAGTCTCAT  49
      ||||||| || |||||||||||| ||||||||||||| ||||||||||||
seq2  ACAGACTTACCTGGAGTTTTGCTAAAACAGACTCACA-GGTGAGTCTCAT  49

seq1  CTGTGTGAGGACTTCTGTTTGCTATCCTGACACCACTGAGCTGGACTGCT  99
      |||||| ||||| | |||||||| |||||||| |||||||||||||||||
seq2  CTGTGT-AGGAC-TGTGTTTGCTTTCCTGACA-CACTGAGCTGGACTGCT  96

seq1  -AGTATATTCGTTAAGTGTTTTCAAGTGGATGGAGCAGCCTCTGCTGATT  148
       | ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AACTATATTCGTGAAGTGTTTTCAAGTGGATGGAGCAGCCTCTGCTGATT  146

seq1  CCTGTG-AACTGAACTGCTGAGTTCCTGACAACACAGATGGGA-TTTGCT  196
      |||||| |||||||||||||||||||||||||| ||||||||| ||||||
seq2  CCTGTGAAACTGAACTGCTGAGTTCCTGACAACGCAGATGGGATTTTGCT  196

seq1  CC-AAAGAACTATTTCT-AAACATGT-CCAACTCCCCTGTATTCTCATAA  243
      || |||||||||||||| ||||| || |||||| |||||||| |||||||
seq2  CCAAAAGAACTATTTCTAAAACAGGTCCCAACTACCCTGTATCCTCATAA  246

seq1  CCTTTCTTTTCCACTACCTCTGGTGGGTGGAGGGCTAGAAGGGGGAGTTA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTTTCCACTACCTCTGGTGGGTGGAGGGCTAGAAGGGGGAGTTA  296

seq1  AAGTATTTAAG-AACCCATTTTAAAAATAAGGTTTTGAAAAAATAAAGTC  342
      ||||||||||| |||||||||||||| ||||||||| |||||||||||||
seq2  AAGTATTTAAGAAACCCATTTTAAAAGTAAGGTTTTAAAAAAATAAAGTC  346

seq1  TGAGCTACACGTTTGTGTGTTGGGTAGGAAAATTGGTGCTTACTCATTCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTACACGTTTGTGTGTTGGGTAGGAAAATTGGTGCTTACTCATTCT  396

seq1  TTCTTACAGAACTCAATCAGAGTTCACCTCTCTGGATGCTTGCCTCTGGT  442
      ||||||||||||    ||||||||||||||| ||||||||||||||||||
seq2  TTCTTACAGAAC----TCAGAGTTCACCTCTTTGGATGCTTGCCTCTGGT  442

seq1  AGATGGTTCTTACTCCACCTCCACCCTCTCCTTCAGCAGCGCCCTCTATA  492
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGATGGTTCTTACTCCACCTCCACCCTCTCCTTCAGCAGCTCCCTCTATA  492

seq1  GTATCCTCCAACCTTTTATCAGAGAGCTCCTCACTTGGAGGCAGGAAGCC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTCCAACCTTTTATCAGAGAGCTCCTCACTTGGAGGCAGGAAGCC  542

seq1  TTATGGCTCAGTCTTTTCCAATGTCCTCAAGGCCAGACCCGTCATCACAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCTCAGTCTTTTCCAATGTCCTCAAGGCCAGACCCGTCATCACAT  592

seq1  GGTCCTCTTATCCCTTAGAAATACGCTGGTGGTACAGGAGAGATACCTCA  642
      |||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  GGTCCTCTTATCCCTTAGGAATACTCTGGTGGTACAGGAGAGATACCTCA  642

seq1  GTGATAAAGAGCACTGGCTATTCTTACAGAGAACCCAGGTTCAATTCCCA  692
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  GTGATTAAGAGCACTGGCTATTCTTACAGAGAACCCAGGTTCAATTTCCA  692

seq1  GCATCTACAGTACAACCATATATAACTGCAGTCCTATGGGATCCAATGTC  742
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCATCTACAGTACCACCATATATAACTGCAGTCCTATGGGATCCAATGTC  742

seq1  CTCTCCTGGTCTCCTGGGTTACTGCACACACATGATGCATATATGCATGC  792
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGGTCTCCTAGGTTACTGCACACACATGATGCATATATGCATGC  792

seq1  AGCAAAATCACACACTAAATAATAAAAATAATTTTTTAAATAATTTCTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATCACACACTAAATAATAAAAATAATTTTTTAAATAATTTCTCT  842

seq1  CCACCAGTGTAAGTACATGTCATTACTTAGATACCCAGCAGACATTTCCA  892
      |||||||||||||||||||||||||||||| |||||||||||||||  ||
seq2  CCACCAGTGTAAGTACATGTCATTACTTAGCTACCCAGCAGACATTCTCA  892

seq1  GCCATAATCTTTGACCTTCTCAGAGGAAAAGAATAATTCAGGTTTCTAAC  942
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAATCTTTGACCTTCTCAGAGGAAAAGAATAATTCAGGTTTCTAAC  942

seq1  TGTGGTTTGAATTTCTGAAACTTCTAAATGGCCAGAATTC  982
      ||| |||| |||||||||||||||||||||||||||||||
seq2  TGTAGTTTTAATTTCTGAAACTTCTAAATGGCCAGAATTC  982