BAC Information

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BAC

Clone NameB6Ng01-016E01
Chromosome1 (Build37)
Map Location 193,101,381 - 193,233,477
singlet/doubletdoublet
Overlap geneNenf, 2310028N02Rik, Ppp2r5a, LOC100039501
Upstream geneLOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3
Downstream geneLOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016E01.bB6Ng01-016E01.g
ACCDH850272DH850273
length1,1251,077
definitionDH850272|Mus musculus domesticus DNA, BAC clone: B6Ng01-016E01, 5' end.DH850273|Mus musculus domesticus DNA, BAC clone: B6Ng01-016E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(193,232,350 - 193,233,477)(193,101,381 - 193,102,457)
sequence
gaattcctcccagttaaaccttgtttgagtttatttcccattgaaaggct
gagacctaaggcaactgggaggaaagggttatttagcttacacatacaga
tcacagtccaccactgagggaggaaagcaggaacctggaggcaggagctg
acccagagacgactgggaactttgcttactgccttgctcccaggtttact
tagcctgctttatgatatcacccagaaccaccagtgcagggatgcactgc
ccgctgtggtctgggccctcgcacactgatcattaatcaagaaaataccc
cacagacctacccataggcctaactggtggaggcattttctcaactcaag
ttcccccttcccagatgacccaagcttatatcaagttgaaaaaaaaaaaa
attaacagtagaagcctcttagattcagatctaacccaggactatcctgc
tccaaattctttttttttttaataaaacaactttattcatgacacattat
ttaaaaaaaattcccatcccctcgaaatgaattaaaaaaaaacaacaaca
aaaacaagagacaaacaaaaacaaaagccaccaccctgttcccacttcct
cccgttccctccaaataaaaggggggaaaaggtgaagaaaaaaattaaaa
caaaccaaaaacacctgaaaaacaaaaacactcccaaactccccaaaaca
aagcagtgcattccccccaagtgtaaggggaatttacccctgagtcgcag
gaagctggctacagaaacctgccaagaaagacactcaaaacagaaaaaga
aacacaaaagcaaacaaacagatttccaggcaaactggaggggcagggag
cgggaggaaagaaggacctggtaggataggagcaggcagcagggactgca
aaggcaggagagaggagggaaggaaatatgctgaaaagtttggtgtccct
ctagaagcctgggtaaaaaagagctcctcctacaacccgatgcccaccta
cccttgagcagggccagagaaagatgggaggggagcctgggagcagagcc
actttcgctagatgagatgcgtcatgccaatccccccaggaaatgttagc
cctctgctcccacaccctgggcctc
gaattcttgctcttaaacaaaaactttgcagagggaaaagatcctgtcag
tcacatgagtgaagggtttcctcatgatgacacacataatccctgtctgt
gctcggctctggttggaatcccagctcagcggagggcccctccccttata
tgactagggcactcaagccaggtcatgtgattaccttcgcccatgagcag
gcatttctccatgtgacatcacacaacagttgaggcttgcccaggtgctt
cgtggcctcccggggctgatgcggaagtttcatttctctgggtgacatca
cactccggttgctgactgcccaggtgcttcatggcctcccggggctcacg
cggaagttgcatcatctctgatgcttggcttttaagttgtttgtctttgg
ctaatattaagctggaacggggtcagggaaagttgtcaaggcaaccagac
agcaaatacacttgctatagccctcgggtgaatcatttcataggcctgca
gaaggccagggctgggcctccatgtagaagagactgagtctggtacagtg
acgccgccccgcccccccctgccccaagcactggccacttaacctgcttt
agtgcatggcctcctcagctcttaacccaaggagaaggaggcaagagacc
cattctccaagccacaggccagagcacatttccccctggagtgtctcaaa
cctttgtgtacacagaatcccctagaaggttcaagaagacagagcttggt
gacccccacggcacctgactttaccatttggtaggtctgaggtggggtca
gagaggtcacatgtctagtaatttcttcaggtgatgtaacctatgagctt
caacttgtggactgctgtctgtgtgccctccctcaccatcctgatgactg
gcacttgtgatgggcggggggcaaggcgaggagtagcttctggttgaggc
tctaatctgttgagggtctcggctctagacttctccttttcagccagtaa
ttggatggtgaacttgggaatcactacctttccctctagttgtatgttcc
atggaatagaaaggctctgaccccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_193232350_193233477
seq2: B6Ng01-016E01.b_33_1157 (reverse)

seq1  GAGGCCCAGGGCGT-GGAGCAGA-GGCTACATATTCCCTGTGGGGATTTG  48
      ||||||||||| || |||||||| ||||| | ||| |||| ||||| |||
seq2  GAGGCCCAGGGTGTGGGAGCAGAGGGCTA-ACATTTCCTGGGGGGA-TTG  48

seq1  CCATGGACGCATCTCATCT-GCGAAAGCTGCTCCCTGCTTCCCGGCTCCC  97
       ||| |||||||||||||| |||||||  |||  ||||| || |||||||
seq2  GCAT-GACGCATCTCATCTAGCGAAAGTGGCT--CTGCTCCCAGGCTCCC  95

seq1  CT-CCATC-CTCTCTGGGCCTGCTCAAGGGTAGGTGGGC-TCGGGTGGTA  144
      || |||||  ||||||| ||||||||||||||||||||| |||||| |||
seq2  CTCCCATCTTTCTCTGGCCCTGCTCAAGGGTAGGTGGGCATCGGGTTGTA  145

seq1  GGA-GAGCTCTTTTTTACCCAGGGCTCTGGAAGGACACCAAACTTCTCAG  193
      ||| |||||||||||||||||||  ||| || ||||||||||||| ||||
seq2  GGAGGAGCTCTTTTTTACCCAGGCTTCTAGAGGGACACCAAACTTTTCAG  195

seq1  CTTATTTCCTTCCCTCCTCTTCTCCCTGCCTTTTGCAGTCCCTGCCTGCC  243
      | ||||||||||||||||| ||| |||||| ||||||||||||| |||||
seq2  CATATTTCCTTCCCTCCTC-TCT-CCTGCC-TTTGCAGTCCCTG-CTGCC  241

seq1  TGCTCCTATCCTACCAGGTCCTTCTTTCCTCCCGCTCCCTGCCCCTCCAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTATCCTACCAGGTCCTTCTTTCCTCCCGCTCCCTGCCCCTCCAG  291

seq1  TTTGCCTGGAAATCTGTTTTGTTTGCTTTTGTGTTTCTTTTTCTGTTTTG  343
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTGCCTGGAAATCTG-TTTGTTTGCTTTTGTGTTTCTTTTTCTGTTTTG  340

seq1  AGTGTCTTTCTTGGCAGGTTTCTGTAGCCAGCTTCCTGCGACTCAGGGGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTTCTTGGCAGGTTTCTGTAGCCAGCTTCCTGCGACTCAGGGGT  390

seq1  AAATTCCCCTTACACTTGGGGGGAATGCACTGCTTTGTTTTGGGGAGTTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCCCTTACACTTGGGGGGAATGCACTGCTTTGTTTTGGGGAGTTT  440

seq1  GGGAGTGTTTTTGTTTTTCAGGTGTTTTTGGTTTGTTTTAATTTTTTTCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGTTTTTGTTTTTCAGGTGTTTTTGGTTTGTTTTAATTTTTTTCT  490

seq1  TCACCTTTTCCCCCCTTTTATTTGGAGGGAACGGGAGGAAGTGGGAACAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTTTCCCCCCTTTTATTTGGAGGGAACGGGAGGAAGTGGGAACAG  540

seq1  GGTGGTGGCTTTTGTTTTTGTTTGTCTCTTGTTTTTGTTGTTGTTTTTTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGCTTTTGTTTTTGTTTGTCTCTTGTTTTTGTTGTTGTTTTTTT  590

seq1  TTAATTCATTTCGAGGGGATGGGAATTTTTTTTAAATAATGTGTCATGAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCATTTCGAGGGGATGGGAATTTTTTTTAAATAATGTGTCATGAA  640

seq1  TAAAGTTGTTTTATTAAAAAAAAAAAGAATTTGGAGCAGGATAGTCCTGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTGTTTTATTAAAAAAAAAAAGAATTTGGAGCAGGATAGTCCTGG  690

seq1  GTTAGATCTGAATCTAAGAGGCTTCTACTGTTAATTTTTTTTTTTTTCAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATCTGAATCTAAGAGGCTTCTACTGTTAATTTTTTTTTTTTTCAA  740

seq1  CTTGATATAAGCTTGGGTCATCTGGGAAGGGGGAACTTGAGTTGAGAAAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATATAAGCTTGGGTCATCTGGGAAGGGGGAACTTGAGTTGAGAAAA  790

seq1  TGCCTCCACCAGTTAGGCCTATGGGTAGGTCTGTGGGGTATTTTCTTGAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCACCAGTTAGGCCTATGGGTAGGTCTGTGGGGTATTTTCTTGAT  840

seq1  TAATGATCAGTGTGCGAGGGCCCAGACCACAGCGGGCAGTGCATCCCTGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATCAGTGTGCGAGGGCCCAGACCACAGCGGGCAGTGCATCCCTGC  890

seq1  ACTGGTGGTTCTGGGTGATATCATAAAGCAGGCTAAGTAAACCTGGGAGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGGTTCTGGGTGATATCATAAAGCAGGCTAAGTAAACCTGGGAGC  940

seq1  AAGGCAGTAAGCAAAGTTCCCAGTCGTCTCTGGGTCAGCTCCTGCCTCCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGTAAGCAAAGTTCCCAGTCGTCTCTGGGTCAGCTCCTGCCTCCA  990

seq1  GGTTCCTGCTTTCCTCCCTCAGTGGTGGACTGTGATCTGTATGTGTAAGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTGCTTTCCTCCCTCAGTGGTGGACTGTGATCTGTATGTGTAAGC  1040

seq1  TAAATAACCCTTTCCTCCCAGTTGCCTTAGGTCTCAGCCTTTCAATGGGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACCCTTTCCTCCCAGTTGCCTTAGGTCTCAGCCTTTCAATGGGA  1090

seq1  AATAAACTCAAACAAGGTTTAACTGGGAGGAATTC  1128
      |||||||||||||||||||||||||||||||||||
seq2  AATAAACTCAAACAAGGTTTAACTGGGAGGAATTC  1125

seq1: chr1_193101381_193102457
seq2: B6Ng01-016E01.g_69_1145

seq1  GAATTCTTGCTCTTAAACAAAAACTTTGCAGAGGGAAAAGATCCTGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTCTTAAACAAAAACTTTGCAGAGGGAAAAGATCCTGTCAG  50

seq1  TCACATGAGTGAAGGGTTTCCTCATGATGACACACATAATCCCTGTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGAGTGAAGGGTTTCCTCATGATGACACACATAATCCCTGTCTGT  100

seq1  GCTCGGCTCTGGTTGGAATCCCAGCTCAGCGGAGGGCCCCTCCCCTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGCTCTGGTTGGAATCCCAGCTCAGCGGAGGGCCCCTCCCCTTATA  150

seq1  TGACTAGGGCACTCAAGCCAGGTCATGTGATTACCTTCGCCCATGAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGGGCACTCAAGCCAGGTCATGTGATTACCTTCGCCCATGAGCAG  200

seq1  GCATTTCTCCATGTGACATCACACAACAGTTGAGGCTTGCCCAGGTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTCCATGTGACATCACACAACAGTTGAGGCTTGCCCAGGTGCTT  250

seq1  CGTGGCCTCCCGGGGCTGATGCGGAAGTTTCATTTCTCTGGGTGACATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCCTCCCGGGGCTGATGCGGAAGTTTCATTTCTCTGGGTGACATCA  300

seq1  CACTCCGGTTGCTGACTGCCCAGGTGCTTCATGGCCTCCCGGGGCTCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCGGTTGCTGACTGCCCAGGTGCTTCATGGCCTCCCGGGGCTCACG  350

seq1  CGGAAGTTGCATCATCTCTGATGCTTGGCTTTTAAGTTGTTTGTCTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGTTGCATCATCTCTGATGCTTGGCTTTTAAGTTGTTTGTCTTTGG  400

seq1  CTAATATTAAGCTGGAACGGGGTCAGGGAAAGTTGTCAAGGCAACCAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATTAAGCTGGAACGGGGTCAGGGAAAGTTGTCAAGGCAACCAGAC  450

seq1  AGCAAATACACTTGCTATAGCCCTCGGGTGAATCATTTCATAGGCCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATACACTTGCTATAGCCCTCGGGTGAATCATTTCATAGGCCTGCA  500

seq1  GAAGGCCAGGGCTGGGCCTCCATGTAGAAGAGACTGAGTCTGGTACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCAGGGCTGGGCCTCCATGTAGAAGAGACTGAGTCTGGTACAGTG  550

seq1  ACGCCGCCCCGCCCCCCCCTGCCCCAAGCACTGGCCACTTAACCTGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCGCCCCGCCCCCCCCTGCCCCAAGCACTGGCCACTTAACCTGCTTT  600

seq1  AGTGCATGGCCTCCTCAGCTCTTAACCCAAGGAGAAGGAGGCAAGAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATGGCCTCCTCAGCTCTTAACCCAAGGAGAAGGAGGCAAGAGACC  650

seq1  CATTCTCCAAGCCACAGGCCAGAGCACATTTCCCCCTGGAGTGTCTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCCAAGCCACAGGCCAGAGCACATTTCCCCCTGGAGTGTCTCAAA  700

seq1  CCTTTGTGTACACAGAATCCCCTAGAAGGTTCAAGAAGACAGAGCTTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGTACACAGAATCCCCTAGAAGGTTCAAGAAGACAGAGCTTGGT  750

seq1  GACCCCCACGGCACCTGACTTTACCATTTGGTAGGTCTGAGGTGGGGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCCACGGCACCTGACTTTACCATTTGGTAGGTCTGAGGTGGGGTCA  800

seq1  GAGAGGTCACATGTCTAGTAATTTC-TCAGGTGATGTAACCTATGAGC-T  848
      ||||||||||||||||||||||||| |||||||||||||||||||||| |
seq2  GAGAGGTCACATGTCTAGTAATTTCTTCAGGTGATGTAACCTATGAGCTT  850

seq1  CAACTTGTTGACTGCTGTCTGTGTGCCCTCCCTCACCATTCCTGATGACT  898
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  CAACTTGTGGACTGCTGTCTGTGTGCCCTCCCTCACCA-TCCTGATGACT  899

seq1  GGCACTTGTGATGGGCGGGGGGCAAGGCGAGGAGTAGCCTCTGG-TGAGG  947
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  GGCACTTGTGATGGGCGGGGGGCAAGGCGAGGAGTAGCTTCTGGTTGAGG  949

seq1  CTCTAATCTGTTGAGGGTCTTCGGCTCTAGACTTCTCCTTTTCAGCCAGT  997
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTCTAATCTGTTGAGGGTC-TCGGCTCTAGACTTCTCCTTTTCAGCCAGT  998

seq1  TAATTGAGTGTGAACTTGGGGAATCACCTACC-TTCCCTCTAAGTTGTAT  1046
       | | ||  |||||||| |||||||| ||||| |||||||| ||||||||
seq2  AATTGGATGGTGAACTT-GGGAATCA-CTACCTTTCCCTCT-AGTTGTAT  1045

seq1  GTCACAT-GAATAGAAAGCTTCTGACACCAGC  1077
      ||  ||| ||||||||||  |||||| |||||
seq2  GTTCCATGGAATAGAAAGGCTCTGACCCCAGC  1077