BAC Information

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BAC

Clone NameB6Ng01-019G14
Chromosome1 (Build37)
Map Location 188,817,943 - 188,918,306
singlet/doubletdoublet
Overlap geneSpata17
Upstream geneLyplal1, Tgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1
Downstream geneGpatch2, Esrrg, 9330162B11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019G14.bB6Ng01-019G14.g
ACCDH852502DH852503
length975945
definitionDH852502|Mus musculus domesticus DNA, BAC clone: B6Ng01-019G14, 5' end.DH852503|Mus musculus domesticus DNA, BAC clone: B6Ng01-019G14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(188,817,943 - 188,818,899)(188,917,053 - 188,918,306)
sequence
gaattcagacccaagatgggatttttagaattatttggcatattttggac
agatattaagagaagaagcccagtcctcactgggactgtttggcgggcaa
tatgcccatctggtagccaccatgtcccttgtgacaacccagctagtgag
ggattacaaagcagaattggtttaactggctttgactacatccaacctcg
ccaagagcaaaaaaaaaaaaaaaaaaaaaaatccagctgctgatttgagt
tgcataggctcaaatattcccttttaattcagctactaaagtacatagat
gacttactgaatgaactatccatttctctatactacctcattttttcact
tagcaaacaaagtactacatttaaaacaaacaggggagcttttccttgag
ctactggagagatctatcatctacttgaggtttactacactgtaaaccgt
gagcccattcgcttctctcagcaaccctttggggtaaatattagtgttca
tattcattatctcctttagtctttgcttggtgacacactggcaacatatg
tgcacagatatacatgtatcacaatatatccttacacacacacacataca
cgcacacacacatacacacacacacacgcacacacactcacacacactca
cactcacacacacatacacacacacagactcacacacacagactcacaca
cacatacacacacacacacatacacacacacatacactcacacacacata
cacactcacacatacactcacacactcaagcacacttgagttgaatgtga
aaacaaataggtctaaccaagactaatagaggaccatacttcttctttga
gcagtaggcagttctgctcaagaatagagtagtgtttaccttcggacact
ctctccatctcccatcttatgatgtctttcctacacacacagcctctggt
aatttcttattggcccttgtcagcc
gaattccatatgtatgccaacacacagaagttaatttctttttagaaaat
gtgacttcttaatcatgagaattggagaccacagcttattatgagaaggt
taaagataatcttgggagaccagagttgttatgttcaaaatgtagaagaa
taaaaggacaaaatagttatctatagggtggtgggaatatttatatacat
ttcagtgtgtattaaaggctgggctgtgactgtgttgaggctctttctta
gcatgtgagaagcctaggattctatttaaagcattgaagaatcaaacaaa
agcggctttagtaatccagtaggctggtgttagttaggtgcccaccccat
catcatgatggtctccactgagaagtgacttcctctcctgccttcttcaa
acacaagccccaggtctcaagggacttgttagctaactgggttataggac
ttcagctgcagaaaatcaaatgtacatttagtacttttcctattcatata
aattcatttcatatgcaaacaaacaatgtattacttccgttttaaaaatt
ctccattagctttatacaaaaactcacaaattcagtgagtgagagaacac
aatactatttttttcctaaaaacctggagccagtaataaaaaatattttt
cttttgtatgtaacatgcttgcatatatggaagcagttttacatgtgtgt
gggcatccaaagctggtattaggtgtctttctcccttttgctgtctgctc
cgtcttctgaagctgagtctcttacagaacctggaacagtccagttaact
agcttttcctagggagttctgttggcacgggatgacatgtggttgtcatg
tctgccaggtcagactcagttctcacacttatttggcaagtgctttatcc
actgagctattcctgcaccttacactgtgtcgcttaaaattgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_188817943_188818899
seq2: B6Ng01-019G14.b_46_994

seq1  GAATTCAGACCCAAGATGGGATTTTTAGAATTATTTGGCATATTTTGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCCAAGATGGGATTTTTAGAATTATTTGGCATATTTTGGAC  50

seq1  AGATATTAAGAGAAGAAGCCCAGTCCTCACTGGGACTGTTTGGCGGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTAAGAGAAGAAGCCCAGTCCTCACTGGGACTGTTTGGCGGGCAA  100

seq1  TATGCCCATCTGGTAGCCACCATGTCCCTTGTGACAACCCAGCTAGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCATCTGGTAGCCACCATGTCCCTTGTGACAACCCAGCTAGTGAG  150

seq1  GGATTACAAAGCAGAATTGGTTTAACTGGCTTTGACTACATCCAACCTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTACAAAGCAGAATTGGTTTAACTGGCTTTGACTACATCCAACCTCG  200

seq1  CCAAGAGCAAAAAAAAAAAAAAAAAAAAAAATCCAGCTGCTGATTTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGCAAAAAAAAAAAAAAAAAAAAAAATCCAGCTGCTGATTTGAGT  250

seq1  TGCATAGGCTCAAATATTCCCTTTTAATTCAGCTACTAAAGTACATAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGGCTCAAATATTCCCTTTTAATTCAGCTACTAAAGTACATAGAT  300

seq1  GACTTACTGAATGAACTATCCATTTCTCTATACTACCTCATTTTTTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTACTGAATGAACTATCCATTTCTCTATACTACCTCATTTTTTCACT  350

seq1  TAGCAAACAAAGTACTACATTTAAAACAAACAGGGGAGCTTTTCCTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAACAAAGTACTACATTTAAAACAAACAGGGGAGCTTTTCCTTGAG  400

seq1  CTACTGGAGAGATCTATCATCTACTTGAGGTTTACTACACTGTAAACCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGAGAGATCTATCATCTACTTGAGGTTTACTACACTGTAAACCGT  450

seq1  GAGCCCATTCGCTTCTCTCAGCAACCCTTTGGGGTAAATATTAGTGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCATTCGCTTCTCTCAGCAACCCTTTGGGGTAAATATTAGTGTTCA  500

seq1  TATTCATTATCTCCTTTAGTCTTTGCTTGGTGACACACTGGCAACATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTATCTCCTTTAGTCTTTGCTTGGTGACACACTGGCAACATATG  550

seq1  TGCACAGATATACATGTATCACAATATATCCTTACACACACACACATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGATATACATGTATCACAATATATCCTTACACACACACACATACA  600

seq1  CGCACACACACATACACACACACACACGCACACACACTCACACACACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACACACATACACACACACACACGCACACACACTCACACACACTCA  650

seq1  CACTCACACACACATACACACACACAGACTCACACACACAGACTCACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACACACACATACACACACACAGACTCACACACACAGACTCACACA  700

seq1  CACATACACACACACACACATACACACACACATACACTCACACACACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACACACACACACATACACACACACATACACTCACACACACATA  750

seq1  CACACTCACACATACACTCACACACTCAAGCACACTTGAGTTGAATGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCACACATACACTCACACACTCAAGCACACTTGAGTTGAATGTGA  800

seq1  AAACAAATAGGTCTAAACCAGACTAATAAGAGGACCATACATTCTTCTTT  850
      |||||||||||||||| | |||||||| |||||||||||| |||||||||
seq2  AAACAAATAGGTCTAACCAAGACTAAT-AGAGGACCATAC-TTCTTCTTT  848

seq1  GAGCAGTAGGCAGTTCTGCTCAAGAATAGAGTAGTGTTTAACCTTCGGGA  900
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  GAGCAGTAGGCAGTTCTGCTCAAGAATAGAGTAGTGTTT-ACCTTC-GGA  896

seq1  CACTCTCTCCAATCTCCCATCTTATGATGTTCTTTCCCTACACCACACAG  950
      |||||||||| |||||||||||||||||| ||||| |||||| |||||||
seq2  CACTCTCTCC-ATCTCCCATCTTATGATG-TCTTT-CCTACA-CACACAG  942

seq1  CCTCTGG  957
      |||||||
seq2  CCTCTGG  949

seq1: chr1_188917053_188918306
seq2: B6Ng01-019G14.g_67_1011 (reverse)

seq1  TTTCAATAAATATGAACATGAATATTTTGACAATCAAAAGATGTTTTGAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTGGAACTGTTGACTGTCAGACTCAGAGCTCCCCCAGCAGATGACAT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TAGCACCAACTGACCGGAAGTTCCCTAGTTCACGCCCATTCTGAGGTCAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  CATTATGGAGAACTATAATACTAAAGTATTTCCCTCAACTCCAAAGTCTG  200
                                                        
seq2  --------------------------------------------------  0

seq1  ATCACTTAAAACACTGAGTTAAAACTGACTGGCTTAGCTTGGCGCAGTTC  250
                                                        
seq2  --------------------------------------------------  0

seq1  ACAAGCAGATTGAAGAAACATGAGTAAGTTGCATGATTTATAAATTATTT  300
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTGTTTTCACTTTTTAAGCGACACAGTGTATGGTTGCAGGAATGGCTC  350
            |||||  ||||||||||||||||||| || ||||||||| ||||
seq2  ------TTTCA-ATTTTAAGCGACACAGTGTAAGG-TGCAGGAATAGCTC  42

seq1  AGTGGATAAAGCACTTGCCAAATAAGTGTGAGGACTTGAGTCTGACCTGG  400
      |||||||||||||||||||||||||||||||| || ||||||||||||||
seq2  AGTGGATAAAGCACTTGCCAAATAAGTGTGAGAAC-TGAGTCTGACCTGG  91

seq1  CAGACATGACAACCACATGTCATCCCGTGCCAACAGACACTCCCTAGGAA  450
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGACATGACAACCACATGTCATCCCGTGCCAACAGA-ACTCCCTAGGAA  140

seq1  AAGCTGGTTAACTGGACTGTTCCAGGTTCTGTAAGAGACTCAGCTTCAGA  500
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGTTAACTGGACTGTTCCAGGTTCTGTAAGAGACTCAGCTTCAGA  190

seq1  AGACGGAGCAGACAGC-AAAGGGAGAAAGACACCTAATACCAGCTTTGGA  549
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGACGGAGCAGACAGCAAAAGGGAGAAAGACACCTAATACCAGCTTTGGA  240

seq1  TGCCCACACACATGTAAAACTGCTTCCATATATGCAAGCATGTTACATAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACACACATGTAAAACTGCTTCCATATATGCAAGCATGTTACATAC  290

seq1  AAAAGAAAAATATTTTTTATTACTGGCTCCAGGTTTTTAGGAAAAAAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAATATTTTTTATTACTGGCTCCAGGTTTTTAGGAAAAAAATA  340

seq1  GTATTGTGTTCTCTCACTCACTGAATTTGTGAGTTTTTGTATAAAGCTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTGTTCTCTCACTCACTGAATTTGTGAGTTTTTGTATAAAGCTAA  390

seq1  TGGAGAATTTTTAAAACGGAAGTAATACATTGTTTGTTTGCATATGAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATTTTTAAAACGGAAGTAATACATTGTTTGTTTGCATATGAAAT  440

seq1  GAATTTATATGAATAGGAAAAGTACTAAATGTACATTTGATTTTCTGCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATATGAATAGGAAAAGTACTAAATGTACATTTGATTTTCTGCAG  490

seq1  CTGAAGTCCTATAACCCAGTTAGCTAACAAGTCCCTTGAGACCTGGGGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTCCTATAACCCAGTTAGCTAACAAGTCCCTTGAGACCTGGGGCT  540

seq1  TGTGTTTGAAGAAGGCAGGAGAGGAAGTCACTTCTCAGTGGAGACCATCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGAAGAAGGCAGGAGAGGAAGTCACTTCTCAGTGGAGACCATCA  590

seq1  TGATGATGGGGTGGGCACCTAACTAACACCAGCCTACTGGATTACTAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGGGGTGGGCACCTAACTAACACCAGCCTACTGGATTACTAAAG  640

seq1  CCGCTTTTGTTTGATTCTTCAATGCTTTAAATAGAATCCTAGGCTTCTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTTTTGTTTGATTCTTCAATGCTTTAAATAGAATCCTAGGCTTCTCA  690

seq1  CATGCTAAGAAAGAGCCTCAACACAGTCACAGCCCAGCCTTTAATACACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAAGAAAGAGCCTCAACACAGTCACAGCCCAGCCTTTAATACACA  740

seq1  CTGAAATGTATATAAATATTCCCACCACCCTATAGATAACTATTTTGTCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGTATATAAATATTCCCACCACCCTATAGATAACTATTTTGTCC  790

seq1  TTTTATTCTTCTACATTTTGAACATAACAACTCTGGTCTCCCAAGATTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCTTCTACATTTTGAACATAACAACTCTGGTCTCCCAAGATTAT  840

seq1  CTTTAACCTTCTCATAATAAGCTGTGGTCTCCAATTCTCATGATTAAGAA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACCTTCTCATAATAAGCTGTGGTCTCCAATTCTCATGATTAAGAA  890

seq1  GTCACATTTTCTAAAAAGAAATTAACTTCTGTGTGTTGGCATACATATGG  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATTTTCTAAAAAGAAATTAACTTCTGTGTGTTGGCATACATATGG  940

seq1  AATTC  1254
      |||||
seq2  AATTC  945