BAC Information

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BAC

Clone NameB6Ng01-019L19
Chromosome1 (Build37)
Map Location 79,014,632 - 79,148,731
singlet/doubletdoublet
Overlap genenone
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
Downstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019L19.bB6Ng01-019L19.g
ACCDH852738DH852739
length1,0681,071
definitionDH852738|Mus musculus domesticus DNA, BAC clone: B6Ng01-019L19, 5' end.DH852739|Mus musculus domesticus DNA, BAC clone: B6Ng01-019L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,014,632 - 79,015,720)(79,147,653 - 79,148,731)
sequence
gaattcaccttttttaaaataaactaacaataaaataatgctcagttcat
ctagaagtatcccttcctttgactcagtcccatgatcagctcacttttta
ttttttaatatttgttcaagaaaaagaagactacttcacatagtctaatg
tgagacaattttgagaataaaagaaagtatgtgctaaagtggaaatttga
catttttaaatatgttttaaagcaagatcttactacataggccaggatgc
acttgaactcacagatatctaccaaatactgcctcctgaatactggaatt
aaatatgtgtgcctcatgcctagctaattttttcacttttatggaccact
attaattttgtaatattgacaattaaaatagccaactcaaaattacttta
aaaataaaatccacttaaataaattaagagaaaaaattatgcaaattcta
catctcttgtctgatcacttttcttcacacttgtttggtttcttaacatc
aagtctgcgtgctcccatctttaggtatatattttttgttatagcacttg
atttttttttaaaagaaggtattctttcaatatgtatccttctttgattt
ctgtggctgtataaaacactctggtcaaaagcaacttagaggaaagattg
atttcatcttgcaattcccaggccatctctcaatccaaccatcattgaga
gaagttaaggcaggaacttggagacaagaaccacggagaaaacattgctt
gctggtgtggggagccgcactcacattcgccattataagatggcactgac
agctgtgttctaagtagtaaataatctgcacacgtgcaggggcagttttc
ccgccacgtgttctgcctttctcgtgatgacaactgggccgatgggctgc
agccaatcaggagtgacacatcctagcggaggataattctccttaaagga
cggggttttgccatctctctcttgctctctgctcctgagatgttagcaat
aagcttgcccagagatccggttgtgcgtctttcctgcggtgcgacgcgtg
taagagtggtgcgaaacc
gaattctttgttctgggattctttgtaaaaacatcaatctctcccaatgt
gtgtttctcaaaagcaagacattcctcaaagcagttatggcctcagaact
cagaaaccaagagtgatgtttccagatttggtgttggtttattaaactcg
gtctgggctgagattcctggaaaaaagcctaaacttgaaaatgaggacac
attgatttaaatctcaagcaggaaaaattgaatcaattatcccaggactt
cagttgtctgtgttgtcttcagtaagggaagtaaagacactagcatcccc
cattcgtaaggagtaccaaattaaagaatgctatcaacatgttcatgaga
ctaacaatggaaaagaagacgcaagaaagtgcctgttggggattgtgata
tagaagggcaatctcagcactcatgaagctgagttgggaagactgttgct
tcaggtctagcctgtgctacatggtgagactttatcttaaaaacaagagc
atcagttattgatagtatttttttcaattttttgttataaaataaagata
agatagtgattctattcatgctaatccagctataagtgccatccaatatt
acttattacttactttgtttttaaaagacttattttcattttgattatgt
gttgtgagtgtctctgtgtgggtatgtatattgcaggtgcccatagaagg
caacactccttggagcaggagtgttgagtattcactcactgcctaaatgg
ggtgctgagaaccaaattcatgtccttggcaggagtagtaagcatgatga
aatgcttacagagtcacctctgtagcctgagatctactttctaactagaa
aagcatatacatatgcttttttggtgcaggaataaagaggtacatgcttg
tatacatctactaaagtacatttttactaaaaaaaaagtttcagaaagtc
tcaaagagtcaacattccccttgcaaattaccactaaagatttagtgttt
cttaacaacatatctagtatgttgccacagttgaaagggtgaatgtctcc
tctggaagctcacagagtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_79014632_79015720
seq2: B6Ng01-019L19.b_45_1112

seq1  GAATTCACCTTTTTTAAAATAAACTAACAATAAAATAATGCTCAGTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTTTTTAAAATAAACTAACAATAAAATAATGCTCAGTTCAT  50

seq1  CTAGAAGTATCCCTTCCTTTGACTCAGTCCCATGATCAGCTCACTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGTATCCCTTCCTTTGACTCAGTCCCATGATCAGCTCACTTTTTA  100

seq1  TTTTTTAATATTTGTTCAAGAAAAAGAAGACTACTTCACATAGTCTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATATTTGTTCAAGAAAAAGAAGACTACTTCACATAGTCTAATG  150

seq1  TGAGACAATTTTGAGAATAAAAGAAAGTATGTGCTAAAGTGGAAATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAATTTTGAGAATAAAAGAAAGTATGTGCTAAAGTGGAAATTTGA  200

seq1  CATTTTTAAATATGTTTTAAAGCAAGATCTTACTACATAGGCCAGGATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAAATATGTTTTAAAGCAAGATCTTACTACATAGGCCAGGATGC  250

seq1  ACTTGAACTCACAGATATCTACCAAATACTGCCTCCTGAATACTGGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAACTCACAGATATCTACCAAATACTGCCTCCTGAATACTGGAATT  300

seq1  AAATATGTGTGCCTCATGCCTAGCTAATTTTTTCACTTTTATGGACCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTGTGCCTCATGCCTAGCTAATTTTTTCACTTTTATGGACCACT  350

seq1  ATTAATTTTGTAATATTGACAATTAAAATAGCCAACTCAAAATTACTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTTGTAATATTGACAATTAAAATAGCCAACTCAAAATTACTTTA  400

seq1  AAAATAAAATCCACTTAAATAAATTAAGAGAAAAAATTATGCAAATTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAATCCACTTAAATAAATTAAGAGAAAAAATTATGCAAATTCTA  450

seq1  CATCTCTTGTCTGATCACTTTTCTTCACACTTGTTTGGTTTCTTAACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTGTCTGATCACTTTTCTTCACACTTGTTTGGTTTCTTAACATC  500

seq1  AAGTCTGCGTGCTCCCATCTTTAGGTATATATTTTTTGTTATAGCACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGCGTGCTCCCATCTTTAGGTATATATTTTTTGTTATAGCACTTG  550

seq1  ATTTTTTTTTAAAAGAAGGTATTCTTTCAATATGTATCCTTCTTTGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTAAAAGAAGGTATTCTTTCAATATGTATCCTTCTTTGATTT  600

seq1  CTGTGGCTGTATAAAACACTCTGGTCAAAAGCAACTTAGAGGAAAGATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTGTATAAAACACTCTGGTCAAAAGCAACTTAGAGGAAAGATTG  650

seq1  ATTTCATCTTGCAATTCCCAGGCCATCTCTCAATCCAACCATCATTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATCTTGCAATTCCCAGGCCATCTCTCAATCCAACCATCATTGAGA  700

seq1  GAAGTTAAGGCAGGAACTTGGAGACAAGAACCACGGAGAAAACATTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAAGGCAGGAACTTGGAGACAAGAACCACGGAGAAAACATTGCTT  750

seq1  GCTGGTGTGGGGAGCCGCACTCACATTCGCCATTATAAGATGGCACTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGTGGGGAGCCGCACTCACATTCGCCATTATAAGATGGCACTGAC  800

seq1  AGCTGTGTTCTAAGTAGTAAATAATCTGCACACGTGCAGGGGCAGTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTTCTAAGTAGTAAATAATCTGCACACGTGCAGGGGCAGTTTTC  850

seq1  CCGCCACGTGTTCTGCCTTTCTCGTGATGACAACTGGGCCGATGGGCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCACGTGTTCTGCCTTTCTCGTGATGACAACTGGGCCGATGGGCTGC  900

seq1  AGCCAATCAGGGAGTGACACATCCTAGGCGGAGGATAATTCTCCTTAAAA  950
      ||||||||| |||||||||||||||| |||||||||||||||||||||| 
seq2  AGCCAATCA-GGAGTGACACATCCTA-GCGGAGGATAATTCTCCTTAAA-  947

seq1  GGGACGGGGTTTTGCCATTCTCTCTCTTGCTCTCTTGCTCCTGAAGATGT  1000
       |||||||||||||||| |||||||||||||||| |||||||| ||||||
seq2  -GGACGGGGTTTTGCCA-TCTCTCTCTTGCTCTC-TGCTCCTG-AGATGT  993

seq1  AAGCAATAAAGCTTTTGCCCCAGAAGATTCCGGTTTGTTGCGTCTTTCCT  1050
       |||||| ||||||    ||||| ||| |||||||   ||||||||||||
seq2  TAGCAAT-AAGCTT---GCCCAG-AGA-TCCGGTT--GTGCGTCTTTCCT  1035

seq1  GGCCGGTTGCGAACGCGTGTAAGAGTTGGTGCCGAAACC  1089
      |  ||| |||| ||||||||||||| ||||| |||||||
seq2  G--CGG-TGCG-ACGCGTGTAAGAG-TGGTG-CGAAACC  1068

seq1: chr1_79147653_79148731
seq2: B6Ng01-019L19.g_70_1140 (reverse)

seq1  AAAACTCTGTGAGCTTCCCAGAGGAGACATTCAACCTTTCAAACTGTGGC  50
      |||||||||||||||| |||||||||||||||| |||||| |||||||||
seq2  AAAACTCTGTGAGCTT-CCAGAGGAGACATTCACCCTTTC-AACTGTGGC  48

seq1  AAACCATACT-GAATTGTTGTTTAGAAACACTAAATTCTGTAGTGGTTTA  99
      ||  |||||| ||  ||||||| |||||||||||| ||| ||||||  ||
seq2  AA--CATACTAGATATGTTGTTAAGAAACACTAAA-TCTTTAGTGG--TA  93

seq1  TTTTGCAAGGGGAATGTGGACTCTTTGAGAACTTTCTGAAACTTTTTTTT  149
       |||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  ATTTGCAAGGGGAATGTTGACTCTTTGAG-ACTTTCTGAAACTTTTTTTT  142

seq1  TAGTAAAAATGTACTTTAGTAGATGTATACAAGCATGTACCTCTTTAATA  199
      |||||||||||||||||||||||||||||||||||||||||||||| || 
seq2  TAGTAAAAATGTACTTTAGTAGATGTATACAAGCATGTACCTCTTT-ATT  191

seq1  CCTGCACCAAAAAAGCATATGTATATGCTTTTCTAGTTAGAAAGTAGATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACCAAAAAAGCATATGTATATGCTTTTCTAGTTAGAAAGTAGATC  241

seq1  TCAGGCTACAGAGGTGACTCTGTAAGCATTTCATCATGCTTACTACTCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTACAGAGGTGACTCTGTAAGCATTTCATCATGCTTACTACTCCT  291

seq1  GCCAAGGACATGAATTTGGTTCTCAGCACCCCATTTAGGCAGTGAGTGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGACATGAATTTGGTTCTCAGCACCCCATTTAGGCAGTGAGTGAA  341

seq1  TACTCAACACTCCTGCTCCAAGGAGTGTTGCCTTCTATGGGCACCTGCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAACACTCCTGCTCCAAGGAGTGTTGCCTTCTATGGGCACCTGCAA  391

seq1  TATACATACCCACACAGAGACACTCACAACACATAATCAAAATGAAAATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATACCCACACAGAGACACTCACAACACATAATCAAAATGAAAATA  441

seq1  AGTCTTTTAAAAACAAAGTAAGTAATAAGTAATATTGGATGGCACTTATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTAAAAACAAAGTAAGTAATAAGTAATATTGGATGGCACTTATA  491

seq1  GCTGGATTAGCATGAATAGAATCACTATCTTATCTTTATTTTATAACAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATTAGCATGAATAGAATCACTATCTTATCTTTATTTTATAACAAA  541

seq1  AAATTGAAAAAAATACTATCAATAACTGATGCTCTTGTTTTTAAGATAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAAAAAATACTATCAATAACTGATGCTCTTGTTTTTAAGATAAA  591

seq1  GTCTCACCATGTAGCACAGGCTAGACCTGAAGCAACAGTCTTCCCAACTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACCATGTAGCACAGGCTAGACCTGAAGCAACAGTCTTCCCAACTC  641

seq1  AGCTTCATGAGTGCTGAGATTGCCCTTCTATATCACAATCCCCAACAGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCATGAGTGCTGAGATTGCCCTTCTATATCACAATCCCCAACAGGC  691

seq1  ACTTTCTTGCGTCTTCTTTTCCATTGTTAGTCTCATGAACATGTTGATAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTGCGTCTTCTTTTCCATTGTTAGTCTCATGAACATGTTGATAG  741

seq1  CATTCTTTAATTTGGTACTCCTTACGAATGGGGGATGCTAGTGTCTTTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTAATTTGGTACTCCTTACGAATGGGGGATGCTAGTGTCTTTAC  791

seq1  TTCCCTTACTGAAGACAACACAGACAACTGAAGTCCTGGGATAATTGATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTACTGAAGACAACACAGACAACTGAAGTCCTGGGATAATTGATT  841

seq1  CAATTTTTCCTGCTTGAGATTTAAATCAATGTGTCCTCATTTTCAAGTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTCCTGCTTGAGATTTAAATCAATGTGTCCTCATTTTCAAGTTT  891

seq1  AGGCTTTTTTCCAGGAATCTCAGCCCAGACCGAGTTTAATAAACCAACAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTTTCCAGGAATCTCAGCCCAGACCGAGTTTAATAAACCAACAC  941

seq1  CAAATCTGGAAACATCACTCTTGGTTTCTGAGTTCTGAGGCCATAACTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGGAAACATCACTCTTGGTTTCTGAGTTCTGAGGCCATAACTGC  991

seq1  TTTGAGGAATGTCTTGCTTTTGAGAAACACACATTGGGAGAGATTGATGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGAATGTCTTGCTTTTGAGAAACACACATTGGGAGAGATTGATGT  1041

seq1  TTTTACAAAGAATCCCAGAACAAAGAATTC  1079
      ||||||||||||||||||||||||||||||
seq2  TTTTACAAAGAATCCCAGAACAAAGAATTC  1071