BAC Information

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BAC

Clone NameB6Ng01-019O04
Chromosome1 (Build37)
Map Location 196,563,189 - 196,727,371
singlet/doubletdoublet
Overlap genePlxna2
Upstream geneLOC667208, EG623172
Downstream geneCd34, Cd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019O04.bB6Ng01-019O04.g
ACCDH852840DH852841
length1,1921,183
definitionDH852840|Mus musculus domesticus DNA, BAC clone: B6Ng01-019O04, 5' end.DH852841|Mus musculus domesticus DNA, BAC clone: B6Ng01-019O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(196,563,189 - 196,564,378)(196,726,171 - 196,727,371)
sequence
gaattctaaactagaaagggcctcacttctacctccctagtgtttccagc
tgaggagtcctgctggaaaaacagtgtgctattgaaagatactggggtgt
ctgctttgtcccttgcctttctatccaatctgttttaccttcattcatag
gagactaagcttaatttggcattttcagcccagaaccctagaccccgtac
aatgatgggattctgtcaggaatcagtagttggaggggctgtactgttct
ccaggtattgtcctcttcctttagggtagatgaacaggctcagcccagag
aggccaggtggaaatgctcaaggacactggcaacactaaaagctgggccc
tcctgataccttcccatgtgcatgctgtcccctctaagaggattgctatt
ggagaatgagttgagtgattgagcaccaactgtacacaagtccattattt
atgaagacatgtcacatatttctcaaagaagaactgatagtatggttgct
tccattgtgtggaaggaaacaaaagttcaaaaaggtctaagcttactgca
ctataggtaacatgagcaggaactgaacttgaaatgaggactgtcttcta
accacttcttaaccagcatatacagtgtctgttgctctagagagagttcc
taaagagtccaaggcctacctgactgcaataccagagcagggctcagggg
gcctttgctcactagaaggttgaatcacactgtttgtggctagaggccta
gttcctattctttccatcttgacttctgtaggacctctgcagaaacatag
gaaagagaggaaatgtgtctgaaaatctcaaccaactttgtacttctctc
agagtgataaatagctttaattactctgaattactcagccactaccctct
cacccaagtcattaaaaatagattttctctttgaacttgctctaccctca
gatctacagatagtcagagtcttaggacatgacctcagatcagctcaggg
tcaggaagctgttgtatttcttgaagctgtagccacaggcttaagaagta
acttctgggtttctggagttgtacctccatttttcttagtggcaatgctc
attgaactttcataccttaaagggaaggccaggtccttgtatgccatttg
attatatagtttaaggatactggatgtgaatatggttttgta
gaattcatactttttggaagttcagacaaaagtttaagatgttggattgt
gtaggtttcatttcctgacaatcagaggataaaattcctctgttgatagc
tcaaacaggaacttattacaagagttataaaatggaaattgaacaataat
atggaaaatatctcactctggcttcattagacacagaagagtcatttaga
tactaggttgtcatattattcttaaataagagcagctgcccttacatttt
gacctgatagttgttaaatcctctccataaggctgaagagacaagcatca
cacttactccaaggcctgaaattacatgattagagcccggagaataaaaa
ctcgtaattcatgtgcttcaattctctcaaatgccagatgctgaaaaatt
catcaggcacatgtttaatatcaataaataatgagaaaagtctctaaaca
atacagaatttttctgaactgttgtttgtccaaatgagagctacatactt
ttaatgcatggtgggtaaaaatacgcatgtcattggaattttaaaacctg
gacttgtcatcttgcccagtcagactgacatcttccaacttccaatgaga
tttgagcctctgtccaggagagccagtggaacaaagaataataaatcgga
ctgtacctaaaagtctatgaaggcaatatcactgttatctccattcttca
ggttagaaaactggggcacagggaaattagatcctaactgctttgagtac
caagtcttctcttccctaaggacaataattgaaaaattattcaaggacaa
tccttgaaaaatctgtaaattgctccaacctactggaaaaaactattcct
caatgcatgtgaccatctagtatatcttcaaagagttcttctaaattgct
attgcctgtcattttaaaagaaaatttgttggatgccaaaataagtattt
aaaagaggaacttagtagcagatcgattccatgtagctagctgaagttgg
gtgtgggtggcccccactctggtaacctccacccctggggagcaaagcca
gagtttagagagtggggaggccagctggaatatgtaaatcctgtcaaaaa
cgagaccaaacattagtaaaaggagtttatttccctttgtctgtctaaac
cctggagagtgagactgccatcacaggtctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_196563189_196564378
seq2: B6Ng01-019O04.b_44_1235

seq1  GAATTCTAAACTAGAAAGGGCCTCACTTCTACCTCCCTAGTGTTTCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAACTAGAAAGGGCCTCACTTCTACCTCCCTAGTGTTTCCAGC  50

seq1  TGAGGAGTCCTGCTGGAAAAACAGTGTGCTATTGAAAGATACTGGGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGTCCTGCTGGAAAAACAGTGTGCTATTGAAAGATACTGGGGTGT  100

seq1  CTGCTTTGTCCCTTGCCTTTCTATCCAATCTGTTTTACCTTCATTCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGTCCCTTGCCTTTCTATCCAATCTGTTTTACCTTCATTCATAG  150

seq1  GAGACTAAGCTTAATTTGGCATTTTCAGCCCAGAACCCTAGACCCCGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTAAGCTTAATTTGGCATTTTCAGCCCAGAACCCTAGACCCCGTAC  200

seq1  AATGATGGGATTCTGTCAGGAATCAGTAGTTGGAGGGGCTGTACTGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGGATTCTGTCAGGAATCAGTAGTTGGAGGGGCTGTACTGTTCT  250

seq1  CCAGGTATTGTCCTCTTCCTTTAGGGTAGATGAACAGGCTCAGCCCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTATTGTCCTCTTCCTTTAGGGTAGATGAACAGGCTCAGCCCAGAG  300

seq1  AGGCCAGGTGGAAATGCTCAAGGACACTGGCAACACTAAAAGCTGGGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGGTGGAAATGCTCAAGGACACTGGCAACACTAAAAGCTGGGCCC  350

seq1  TCCTGATACCTTCCCATGTGCATGCTGTCCCCTCTAAGAGGATTGCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATACCTTCCCATGTGCATGCTGTCCCCTCTAAGAGGATTGCTATT  400

seq1  GGAGAATGAGTTGAGTGATTGAGCACCAACTGTACACAAGTCCATTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATGAGTTGAGTGATTGAGCACCAACTGTACACAAGTCCATTATTT  450

seq1  ATGAAGACATGTCACATATTTCTCAAAGAAGAACTGATAGTATGGTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACATGTCACATATTTCTCAAAGAAGAACTGATAGTATGGTTGCT  500

seq1  TCCATTGTGTGGAAGGAAACAAAAGTTCAAAAAGGTCTAAGCTTACTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTGTGGAAGGAAACAAAAGTTCAAAAAGGTCTAAGCTTACTGCA  550

seq1  CTATAGGTAACATGAGCAGGAACTGAACTTGAAATGAGGACTGTCTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGTAACATGAGCAGGAACTGAACTTGAAATGAGGACTGTCTTCTA  600

seq1  ACCACTTCTTAACCAGCATATACAGTGTCTGTTGCTCTAGAGAGAGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTCTTAACCAGCATATACAGTGTCTGTTGCTCTAGAGAGAGTTCC  650

seq1  TAAAGAGTCCAAGGCCTACCTGACTGCAATACCAGAGCAGGGCTCAGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTCCAAGGCCTACCTGACTGCAATACCAGAGCAGGGCTCAGGGG  700

seq1  GCCTTTGCTCACTAGAAGGTTGAATCACACTGTTTGTGGCTAGAGGCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGCTCACTAGAAGGTTGAATCACACTGTTTGTGGCTAGAGGCCTA  750

seq1  GTTCCTATTCTTTCCATCTTGACTTCTGTAGGACCTCTGCAGAAACATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATTCTTTCCATCTTGACTTCTGTAGGACCTCTGCAGAAACATAG  800

seq1  GAAAGAGAGGAAATGTGTCTGAAAATCTCAACCAACTTTGTACTTCTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGGAAATGTGTCTGAAAATCTCAACCAACTTTGTACTTCTCTC  850

seq1  AGAGTGATAAATAGCTTTAATTACTCTGAATTACTCAGCCACTACCCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGATAAATAGCTTTAATTACTCTGAATTACTCAGCCACTACCCTCT  900

seq1  CACCCAAGTCATTAAAAATAGATTTTCTCTTTGAACTTGCTCTACCCTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAGTCATTAAAAATAGATTTTCTCTTTGAACTTGCTCTACCCTCA  950

seq1  GATCTACAGATAGTCAGGAGTCTTAGGACATGACCTCAGATCAGCTCAGG  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GATCTACAGATAGTCA-GAGTCTTAGGACATGACCTCAGATCAGCTCAGG  999

seq1  GTCAGGAAGCTG-TGTATTTC-TGAAGCTGTAGCCACAGGCTTAAGAAGT  1048
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  GTCAGGAAGCTGTTGTATTTCTTGAAGCTGTAGCCACAGGCTTAAGAAGT  1049

seq1  -ACTTCTGGGTTTCTGGAGTTTGTACCT-CATTTTTCTTAGTGGCAATGC  1096
       |||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  AACTTCTGGGTTTCTGGAG-TTGTACCTCCATTTTTCTTAGTGGCAATGC  1098

seq1  TCATAG-ACTTTCATAACTTAGAGGACAGG-CAGGTCCTTG-ATGGCATT  1143
      |||| | ||||||||| |||| |||  ||| |||||||||| ||| ||||
seq2  TCATTGAACTTTCATACCTTAAAGGGAAGGCCAGGTCCTTGTATGCCATT  1148

seq1  TGATTTATTAAGTTTTAAGGATATCTGGATGTGATTATTGTTTTGTA  1190
      ||| ||||  || |||||||||| |||||||||| ||| ||||||||
seq2  TGA-TTATATAG-TTTAAGGATA-CTGGATGTGAATATGGTTTTGTA  1192

seq1: chr1_196726171_196727371
seq2: B6Ng01-019O04.g_68_1249 (reverse)

seq1  ATAGCCCTGTGATAGCAGCTCCACTCTCCAGGTGTCTAGCAGGACAAAAA  50
      |||| |||||||| ||||   ||||||||||| || |||   |||  |||
seq2  ATAGACCTGTGATGGCAGTCTCACTCTCCAGG-GTTTAGACAGAC--AAA  47

seq1  GGGAATAAAACTTCTTTTTAACTTATTTGTTTGGTCTGTTTTTGTGACAG  100
      |||||  ||||| |||||  ||| |  ||||||||||  |||| ||||||
seq2  GGGAAATAAACTCCTTTT--ACTAA--TGTTTGGTCTCGTTTT-TGACAG  92

seq1  GATTTTACTATATTTTCCAGGCTTGCCT-CCCACTCTCTAAACTCTTGGC  149
      ||||    || || ||||| ||| |||| |||||||||||||||| ||||
seq2  GATT----TACATATTCCA-GCTGGCCTCCCCACTCTCTAAACTC-TGGC  136

seq1  TTTGCCTCCCAAGTGCTGGA-GTTA-CAGA-TGTGAGCCA-CCACACCCA  195
      |||| ||||| || | |||| |||| |||| || | |||| |||||||||
seq2  TTTG-CTCCCCAGGGGTGGAGGTTACCAGAGTGGGGGCCACCCACACCCA  185

seq1  ACTTCAGCTAGCTACATGGAATCGATCTGCTACTTAAGTTCCTTCTTTTA  245
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  ACTTCAGCTAGCTACATGGAATCGATCTGCTAC-TAAGTTCC-TCTTTTA  233

seq1  AATTACTTATTTTGGCATCCAACAAATTTTCTTTTTAAAAAATGACAGGC  295
      || ||||||||||||||||||||||||||||||||   ||||||||||||
seq2  AA-TACTTATTTTGGCATCCAACAAATTTTCTTTT---AAAATGACAGGC  279

seq1  AATAGCAATTTAGAAGAACTCTTTGGAAGATATACCTAGATGGTCACATG  345
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  AATAGCAATTTAGAAGAACTCTTT-GAAGATATA-CTAGATGGTCACATG  327

seq1  CATTTGAGGAATAGTTTTTTCCAGTAGGTTGGAGCAATTTACAGATTTTT  395
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-TTGAGGAATAGTTTTTTCCAGTAGGTTGGAGCAATTTACAGATTTTT  376

seq1  CAAGGATTGTCCTTGAATAATTTTTCAATTATTGTCCTTAGGGAAGAGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATTGTCCTTGAATAATTTTTCAATTATTGTCCTTAGGGAAGAGAA  426

seq1  GACTTGGTACTCAAAGCAGTTAGGATCTAATTTCCCTGTGCCCCAGTTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGTACTCAAAGCAGTTAGGATCTAATTTCCCTGTGCCCCAGTTTT  476

seq1  CTAACCTGAAGAATGGAGATAACAGTGATATTGCCTTCATAGACTTTTAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTGAAGAATGGAGATAACAGTGATATTGCCTTCATAGACTTTTAG  526

seq1  GTACAGTCCGATTTATTATTCTTTGTTCCACTGGCTCTCCTGGACAGAGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTCCGATTTATTATTCTTTGTTCCACTGGCTCTCCTGGACAGAGG  576

seq1  CTCAAATCTCATTGGAAGTTGGAAGATGTCAGTCTGACTGGGCAAGATGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATCTCATTGGAAGTTGGAAGATGTCAGTCTGACTGGGCAAGATGA  626

seq1  CAAGTCCAGGTTTTAAAATTCCAATGACATGCGTATTTTTACCCACCATG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCAGGTTTTAAAATTCCAATGACATGCGTATTTTTACCCACCATG  676

seq1  CATTAAAAGTATGTAGCTCTCATTTGGACAAACAACAGTTCAGAAAAATT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAGTATGTAGCTCTCATTTGGACAAACAACAGTTCAGAAAAATT  726

seq1  CTGTATTGTTTAGAGACTTTTCTCATTATTTATTGATATTAAACATGTGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTGTTTAGAGACTTTTCTCATTATTTATTGATATTAAACATGTGC  776

seq1  CTGATGAATTTTTCAGCATCTGGCATTTGAGAGAATTGAAGCACATGAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAATTTTTCAGCATCTGGCATTTGAGAGAATTGAAGCACATGAAT  826

seq1  TACGAGTTTTTATTCTCCGGGCTCTAATCATGTAATTTCAGGCCTTGGAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAGTTTTTATTCTCCGGGCTCTAATCATGTAATTTCAGGCCTTGGAG  876

seq1  TAAGTGTGATGCTTGTCTCTTCAGCCTTATGGAGAGGATTTAACAACTAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTGATGCTTGTCTCTTCAGCCTTATGGAGAGGATTTAACAACTAT  926

seq1  CAGGTCAAAATGTAAGGGCAGCTGCTCTTATTTAAGAATAATATGACAAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAAAATGTAAGGGCAGCTGCTCTTATTTAAGAATAATATGACAAC  976

seq1  CTAGTATCTAAATGACTCTTCTGTGTCTAATGAAGCCAGAGTGAGATATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATCTAAATGACTCTTCTGTGTCTAATGAAGCCAGAGTGAGATATT  1026

seq1  TTCCATATTATTGTTCAATTTCCATTTTATAACTCTTGTAATAAGTTCCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATATTATTGTTCAATTTCCATTTTATAACTCTTGTAATAAGTTCCT  1076

seq1  GTTTGAGCTATCAACAGAGGAATTTTATCCTCTGATTGTCAGGAAATGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGCTATCAACAGAGGAATTTTATCCTCTGATTGTCAGGAAATGAA  1126

seq1  ACCTACACAATCCAACATCTTAAACTTTTGTCTGAACTTCCAAAAAGTAT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACACAATCCAACATCTTAAACTTTTGTCTGAACTTCCAAAAAGTAT  1176

seq1  GAATTC  1201
      ||||||
seq2  GAATTC  1182