BAC Information

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BAC

Clone NameB6Ng01-020K05
Chromosome1 (Build37)
Map Location 57,435,163 - 57,606,621
singlet/doubletdoublet
Overlap gene1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339
Upstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509
Downstream gene2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020K05.bB6Ng01-020K05.g
ACCDH853385DH853386
length6021,007
definitionDH853385|Mus musculus domesticus DNA, BAC clone: B6Ng01-020K05, 5' end.DH853386|Mus musculus domesticus DNA, BAC clone: B6Ng01-020K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,435,163 - 57,435,764)(57,605,821 - 57,606,621)
sequence
gaattcaactcatctgtgtgcttcctgttactggtttttatagctgcaga
catacgtctttgctgaagctgtcctggaagctgggttttaatgtaaaact
gcatcgtgcagtggatacattagccgcgtgagagtatctgaacaagttaa
aatgaaaaggcagcgttctctgtctcactagttgtattgccaagtgttga
gtcaccacaggtgacttgcttgtaccccgttggacagcgcagatacagtt
ggcatttacattgaaaatcaattatcccagagcgttgttagcactagggt
agatattcaagttagaatatagctagatggtttcctcatactagaaaact
gttattgttttgaaattggtgctttaaaatgatacaccaaaaaatctatt
ttctcttgctgttttctctcaaatcagttgacttgactagttgactgcta
atggaaactagcaaaaacccaaatttaggttcaagaaaatctcattttgg
tgcctttattcccagattgaaaacaagtgtgttgcttctgcttcctgcga
cttgtgaccaactacttcatgccttccagtggtggtggtggtggtggtgg
tg
gaattccaagacagccgtagctacacagagaaaccctgtcttggaaacaa
aaaagacagacagacagacagacagatagagaatgagagaacaaactggc
ttttcttccaaaggacccaggtttggttcccagcacccatgtcagatggc
tcatacattgcagcctgtaacttcaactccaggagacccaacaccctctt
aagacctgccttccatacgtatacacacatatatacacatggcgaaataa
tagaaaaaaatctttaaaaaacaaagcaaatccaaaataggcccagataa
ctttcctgtttaattttatcaaataataatgaaataatgatttttttata
ttttataagatgtaatttactattgcattgaaattataatctataagtct
tataattttatgctataacttaattcatgagggatgcataattctgatag
ctaaccatgaaaaaaaaatgaggagaaaacacagtaacaaaataatccat
atgaacattaatgtaaagatccctatgaaactattagaaatttgattttt
caatatgagaaaaggataatactttatgaccaagagttgatccctgggat
taatggttggcttaacattttacagttgatggtcataaattaatataatt
ggggtttgtttataatgcagaaaagacatttgaaagttcttcaattttca
gtctgaattttaaaactccctcagaaatccaaggtgagaaatgagttcta
tcactctgtgaacacaagacactatcgaagaattccccctgatgccattc
tcattgatgaaagactggctacatttctcttgagaaggagagcaagcaaa
cagttccaggaaagtaacagtgagccatatttattgtagagacatactat
aaatataggaaattctagagtcaaagtatgtagccagtgatttagggagg
ccatggtatatgtgtcacttatcctggtacagcattgccttaaaattaca
atgtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_57435163_57435764
seq2: B6Ng01-020K05.b_47_648

seq1  GAATTCAACTCATCTGTGTGCTTCCTGTTACTGGTTTTTATAGCTGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCATCTGTGTGCTTCCTGTTACTGGTTTTTATAGCTGCAGA  50

seq1  CATACGTCTTTGCTGAAGCTGTCCTGGAAGCTGGGTTTTAATGTAAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGTCTTTGCTGAAGCTGTCCTGGAAGCTGGGTTTTAATGTAAAACT  100

seq1  GCATCGTGCAGTGGATACATTAGCCGCGTGAGAGTATCTGAACAAGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGTGCAGTGGATACATTAGCCGCGTGAGAGTATCTGAACAAGTTAA  150

seq1  AATGAAAAGGCAGCGTTCTCTGTCTCACTAGTTGTATTGCCAAGTGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAGGCAGCGTTCTCTGTCTCACTAGTTGTATTGCCAAGTGTTGA  200

seq1  GTCACCACAGGTGACTTGCTTGTACCCCGTTGGACAGCGCAGATACAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCACAGGTGACTTGCTTGTACCCCGTTGGACAGCGCAGATACAGTT  250

seq1  GGCATTTACATTGAAAATCAATTATCCCAGAGCGTTGTTAGCACTAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTACATTGAAAATCAATTATCCCAGAGCGTTGTTAGCACTAGGGT  300

seq1  AGATATTCAAGTTAGAATATAGCTAGATGGTTTCCTCATACTAGAAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTCAAGTTAGAATATAGCTAGATGGTTTCCTCATACTAGAAAACT  350

seq1  GTTATTGTTTTGAAATTGGTGCTTTAAAATGATACACCAAAAAATCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGTTTTGAAATTGGTGCTTTAAAATGATACACCAAAAAATCTATT  400

seq1  TTCTCTTGCTGTTTTCTCTCAAATCAGTTGACTTGACTAGTTGACTGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGCTGTTTTCTCTCAAATCAGTTGACTTGACTAGTTGACTGCTA  450

seq1  ATGGAAACTAGCAAAAACCCAAATTTAGGTTCAAGAAAATCTCATTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAACTAGCAAAAACCCAAATTTAGGTTCAAGAAAATCTCATTTTGG  500

seq1  TGCCTTTATTCCCAGATTGAAAACAAGTGTGTTGCTTCTGCTTCCTGCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTATTCCCAGATTGAAAACAAGTGTGTTGCTTCTGCTTCCTGCGA  550

seq1  CTTGTGACCAACTACTTCATGCCTTCCAGTGGTGGTGGTGGTGGTGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGACCAACTACTTCATGCCTTCCAGTGGTGGTGGTGGTGGTGGTGG  600

seq1  TG  602
      ||
seq2  TG  602

seq1: chr1_57605821_57606621
seq2: B6Ng01-020K05.g_286_1071 (reverse)

seq1  TTTACATTGTTAATTTTTAAGGCAATGCTGTACCAGGATAAGTGACACAT  50
      ||||||||||  | ||||||||||||||||||||||||||||||||||||
seq2  TTTACATTGT--AATTTTAAGGCAATGCTGTACCAGGATAAGTGACACAT  48

seq1  ATACCATGGCCTCCCTAAATTCACTTGGCTACAATAACTTTTGGACTCTA  100
      ||||||||||||||||||| |||| ||||||||   |||||  |||||||
seq2  ATACCATGGCCTCCCTAAA-TCAC-TGGCTACA--TACTTT--GACTCTA  92

seq1  GAATTTCCTATATTTATAGTTATGTTCTCTACAAATAAAATATGGCCTCA  150
      ||||||||||||||||||| |||| |||||||||   |||||||| ||||
seq2  GAATTTCCTATATTTATAG-TATG-TCTCTACAA--TAAATATGG-CTCA  137

seq1  CTGTTTACTTTCCTGGGAACTGTTTGCTTGCTCTCCTTCTCAAGAGAAAT  200
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTG-TTACTTTCCT-GGAACTGTTTGCTTGCTCTCCTTCTCAAGAGAAAT  185

seq1  GTAGCCAGTCTTTCATCAATGAGAATGGCATCAGGGGGAATTCTTCGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAGTCTTTCATCAATGAGAATGGCATCAGGGGGAATTCTTCGATA  235

seq1  GTGTCTTGTGTTCACAGAGTGATAGAACTCATTTCTCACCTTGGATTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTGTGTTCACAGAGTGATAGAACTCATTTCTCACCTTGGATTTCT  285

seq1  GAGGGAGTTTTAAAATTCAGACTGAAAATTGAAGAACTTTCAAATGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGTTTTAAAATTCAGACTGAAAATTGAAGAACTTTCAAATGTCTT  335

seq1  TTCTGCATTATAAACAAACCCCAATTATATTAATTTATGACCATCAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATTATAAACAAACCCCAATTATATTAATTTATGACCATCAACTG  385

seq1  TAAAATGTTAAGCCAACCATTAATCCCAGGGATCAACTCTTGGTCATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTAAGCCAACCATTAATCCCAGGGATCAACTCTTGGTCATAAA  435

seq1  GTATTATCCTTTTCTCATATTGAAAAATCAAATTTCTAATAGTTTCATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATCCTTTTCTCATATTGAAAAATCAAATTTCTAATAGTTTCATAG  485

seq1  GGATCTTTACATTAATGTTCATATGGATTATTTTGTTACTGTGTTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACATTAATGTTCATATGGATTATTTTGTTACTGTGTTTTCTC  535

seq1  CTCATTTTTTTTTCATGGTTAGCTATCAGAATTATGCATCCCTCATGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTTTTTTCATGGTTAGCTATCAGAATTATGCATCCCTCATGAAT  585

seq1  TAAGTTATAGCATAAAATTATAAGACTTATAGATTATAATTTCAATGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTATAGCATAAAATTATAAGACTTATAGATTATAATTTCAATGCAA  635

seq1  TAGTAAATTACATCTTATAAAATATAAAAAAATCATTATTTCATTATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATTACATCTTATAAAATATAAAAAAATCATTATTTCATTATTAT  685

seq1  TTGATAAAATTAAACAGGAAAGTTATCTGGGCCTATTTTGGATTTGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAAATTAAACAGGAAAGTTATCTGGGCCTATTTTGGATTTGCTTT  735

seq1  GTTTTTTAAAGATTTTTTTCTATTATTTCGCCATGTGTATATATGTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTAAAGATTTTTTTCTATTATTTCGCCATGTGTATATATGTGTGT  785

seq1  A  801
      |
seq2  A  786