BAC Information

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BAC

Clone NameB6Ng01-020L09
Chromosome1 (Build37)
Map Location 97,297,633 - 97,429,889
singlet/doubletdoublet
Overlap geneLOC100041686
Upstream geneLOC666025, LOC100040685, LOC383603, Tmem157
Downstream geneRnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020L09.bB6Ng01-020L09.g
ACCDH853430DH853431
length1,1541,089
definitionDH853430|Mus musculus domesticus DNA, BAC clone: B6Ng01-020L09, 5' end.DH853431|Mus musculus domesticus DNA, BAC clone: B6Ng01-020L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,428,701 - 97,429,889)(97,297,633 - 97,298,752)
sequence
gaattctgtcacccatgccagcatgtaaagttgtcttcctcatccacgag
atgggtctggttgttcctcccactcacagcacagagaatattcacccagt
gccatttttactatagaaccacctctaggatggtactatatctcaatgat
atttatttttaaagcttttccagagatggaagtgggtatttcctttctat
aagttataaaaatgactagcttctttaaaaatcattctctctcttcaatt
gttggtgtttaatgaacagtcccaattaaattatagggaaaaagaaaatt
gatgttcaagatcacgggcctattattttcccatggtaattttaaaaaaa
tcatttaaagattttagtcttgaaaaagaaatttaaaataaatgaaagaa
aacaaaccaaagggcagccaagtcaggattcagtttgcaaaggttttact
gacgtgtataggggcagtggattgtggaagaatattggtatcaggaatgg
aaaagcattgtaggtttgataaataaattaaaggtggattcaatgaggat
gtaaaattaattgggtaggaaatgaagaaagaagcttgcagattctgaga
gaatatattggtagttggtttgagggctaatatatttatttgcagaagag
aagctagaagacaaatggatttaggtagtaaacaattattaaaattataa
agttgtagaatatctcagttctaagttatatatgcacagatagatgtatt
tgtgtgtgtatattttacatatgacttacagatttgagagaaggatgcat
taaagacatatataaagtcaaatttcaactttatataatgtactgtgtac
ttagtaaagattgaaagaacataacaaagaaaagaaaccaaagtgcatgc
agatcatggtaattaatctgctgacatgatctctacatatgattatatta
aaataggcagtggatttgtttccttgttatttctcgtgagaatagctcct
agagatgagagcaagtccacttctcccaccaagcatgtataccacataag
gaatataatgcacccttggaagaacaatataactactggacaccctagtt
ccgagacaaccaccacccaagagtatcctgagggatcagggtccagccaa
tatg
gaattcaggtttgaaactgtcaaaattcttccacttaaagtgaataaata
accagtcagacagacagacagacagacagatgaatgagtggagagatgga
tatagataaatttttttttctgggctaactgatcatctataccaggttag
gagaatatgaaaaactgtaggtaaacgtgactctgattatcatggcaacc
ctgagcagctggaaatattctatggcattgctaatgggaattcactacat
aatttagtaaaaaggaggagatttggtgcaaatataatgcacaaatctgt
aactaatgactattagccaaacattttatctgtatatcatcagcaaaggt
gaccctgactcgggcatctgaatatttagtcagtccatacttgctaccca
gcagaagattcctgcactctgcttatgttattaaaggtcagcaaacattg
tatttagattctttaagttctctcttcatcaagattacataaggagagga
taaaggatcatcatagtatgtatgtctaagataaacacggccagattact
tcatacacacacacacacacacacacacacacacacacacacacacagat
aaactgacatgctcatcatgttttcaataatgcaatgtaagggcaaattt
attacttatctatttgcttatatttattattatctatttcaactgaatgc
tttatgataatataggtttatgggaacatcaacatctaggattttagata
tcctacaatataattggacataaaattttcaaaattactgatcatagcaa
agaaaacagtatttttctaactccagagttacaaaaataacgtcaaaaaa
ggcagaatgttcatttaagttctatagatgtcacacatggtaaagtatat
ggcacatgactgaatgatacatgtagccatggatcttacattgcattttg
agatttatgactgtgagcagaagacataaaaagactactactgtgtatca
gagacaacactacaggggtggagggaaatccatgaatcaagcttcgataa
gcagaagcttgggactgccttacatctgttttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_97428701_97429889
seq2: B6Ng01-020L09.b_44_1197 (reverse)

seq1  CATATGTGGCTGGAGCCCTGGATCCCTCCATGTATACTCTTTGGTTGTTG  50
      ||||| |||||||| |||| ||||||||   | |||||||| ||| || |
seq2  CATAT-TGGCTGGA-CCCT-GATCCCTC--AGGATACTCTTGGGTGGTGG  45

seq1  GTTTTGTCTCTGGGAACTCTGGGTGGTCCAGTTAGTTAATATTGTTCTTC  100
         |||||||  ||||||  |||| |||||| ||||| ||||||||||||
seq2  ---TTGTCTC--GGAACT-AGGGT-GTCCAG-TAGTT-ATATTGTTCTTC  86

seq1  CTATGGGGTTGCAATTTATATTTCTTTATGTGTGTATACATGCTTGTGTT  150
      | |   || ||||  ||||| ||| ||||||| |||||||||||  || |
seq2  CAA---GGGTGCA--TTATA-TTCCTTATGTG-GTATACATGCT--TGGT  127

seq1  GTGAGAAGTGGACTTGCTCTCATCTCTTAGAGTCTATATTCTCACGGAGA  200
      | |||||||||||||||||||||||||  |||    ||||||||| ||||
seq2  GGGAGAAGTGGACTTGCTCTCATCTCTAGGAG---CTATTCTCAC-GAGA  173

seq1  AAATAAACAAGGAAACAAAATCCACTGCCTATTTTAATATAATCATTATG  250
      ||   ||||||||||| |||||||||||||||||||||||||||| ||||
seq2  AA--TAACAAGGAAAC-AAATCCACTGCCTATTTTAATATAATCA-TATG  219

seq1  TAGAGATCATGTCAGCAGATTAATTACCATGATCTGCATGCACTTTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATCATGTCAGCAGATTAATTACCATGATCTGCATGCACTTTGGTT  269

seq1  TCTTTTTCTTTGTTATGTTTCTTTTCAATCTTTACTAAGTACACAGTACA  350
      || ||||||||||||||||   ||||||||||||||||||||||||||||
seq2  TC-TTTTCTTTGTTATGTT--CTTTCAATCTTTACTAAGTACACAGTACA  316

seq1  TTATATAAAGTTGAAATTTTGACCTTATATATGTCTTTAATGCATCCTTC  400
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  TTATATAAAGTTGAAA-TTTGACTTTATATATGTCTTTAATGCATCCTTC  365

seq1  TCTCAAATCTGTAAGTCATATGTAAAATATACACACACAAATACATCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATCTGTAAGTCATATGTAAAATATACACACACAAATACATCTAT  415

seq1  CTGTGCATATATAACTTAGAACTGAGATATTCTACAACTTTATAATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATATATAACTTAGAACTGAGATATTCTACAACTTTATAATTTTA  465

seq1  ATAATTGTTTACTACCTAAATCCATTTGTCTTCTAGCTTCTCTTCTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGTTTACTACCTAAATCCATTTGTCTTCTAGCTTCTCTTCTGCAA  515

seq1  ATAAATATATTAGCCCTCAAACCAACTACCAATATATTCTCTCAGAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATATTAGCCCTCAAACCAACTACCAATATATTCTCTCAGAATCT  565

seq1  GCAAGCTTCTTTCTTCATTTCCTACCCAATTAATTTTACATCCTCATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTTCTTTCTTCATTTCCTACCCAATTAATTTTACATCCTCATTGA  615

seq1  ATCCACCTTTAATTTATTTATCAAACCTACAATGCTTTTCCATTCCTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTTTAATTTATTTATCAAACCTACAATGCTTTTCCATTCCTGAT  665

seq1  ACCAATATTCTTCCACAATCCACTGCCCCTATACACGTCAGTAAAACCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATATTCTTCCACAATCCACTGCCCCTATACACGTCAGTAAAACCTT  715

seq1  TGCAAACTGAATCCTGACTTGGCTGCCCTTTGGTTTGTTTTCTTTCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACTGAATCCTGACTTGGCTGCCCTTTGGTTTGTTTTCTTTCATTT  765

seq1  ATTTTAAATTTCTTTTTCAAGACTAAAATCTTTAAATGATTTTTTTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATTTCTTTTTCAAGACTAAAATCTTTAAATGATTTTTTTAAAA  815

seq1  TTACCATGGGAAAATAATAGGCCCGTGATCTTGAACATCAATTTTCTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATGGGAAAATAATAGGCCCGTGATCTTGAACATCAATTTTCTTTT  865

seq1  TCCCTATAATTTAATTGGGACTGTTCATTAAACACCAACAATTGAAGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATAATTTAATTGGGACTGTTCATTAAACACCAACAATTGAAGAGA  915

seq1  GAGAATGATTTTTAAAGAAGCTAGTCATTTTTATAACTTATAGAAAGGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGATTTTTAAAGAAGCTAGTCATTTTTATAACTTATAGAAAGGAA  965

seq1  ATACCCACTTCCATCTCTGGAAAAGCTTTAAAAATAAATATCATTGAGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCACTTCCATCTCTGGAAAAGCTTTAAAAATAAATATCATTGAGAT  1015

seq1  ATAGTACCATCCTAGAGGTGGTTCTATAGTAAAAATGGCACTGGGTGAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACCATCCTAGAGGTGGTTCTATAGTAAAAATGGCACTGGGTGAAT  1065

seq1  ATTCTCTGTGCTGTGAGTGGGAGGAACAACCAGACCCATCTCGTGGATGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGTGCTGTGAGTGGGAGGAACAACCAGACCCATCTCGTGGATGA  1115

seq1  GGAAGACAACTTTACATGCTGGCATGGGTGACAGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACAACTTTACATGCTGGCATGGGTGACAGAATTC  1154

seq1: chr1_97297633_97298752
seq2: B6Ng01-020L09.g_65_1153

seq1  GAATTCAGGTTTGAAACTGTCAAAATTCTTCCACTTAAAGTGAATAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTTGAAACTGTCAAAATTCTTCCACTTAAAGTGAATAAATA  50

seq1  ACCAGTCAGACAGACAGACAGACAGACAGATGAATGAGTGGAGAGATGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCAGACAGACAGACAGACAGACAGATGAATGAGTGGAGAGATGGA  100

seq1  TATAGATAAATTTTTTTTTCTGGGCTAACTGATCATCTATACCAGGTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATAAATTTTTTTTTCTGGGCTAACTGATCATCTATACCAGGTTAG  150

seq1  GAGAATATGAAAAACTGTAGGTAAACGTGACTCTGATTATCATGGCAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATGAAAAACTGTAGGTAAACGTGACTCTGATTATCATGGCAACC  200

seq1  CTGAGCAGCTGGAAATATTCTATGGCATTGCTAATGGGAATTCACTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGCTGGAAATATTCTATGGCATTGCTAATGGGAATTCACTACAT  250

seq1  AATTTAGTAAAAAGGAGGAGATTTGGTGCAAATATAATGCACAAATCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGTAAAAAGGAGGAGATTTGGTGCAAATATAATGCACAAATCTGT  300

seq1  AACTAATGACTATTAGCCAAACATTTTATCTGTATATCATCAGCAAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATGACTATTAGCCAAACATTTTATCTGTATATCATCAGCAAAGGT  350

seq1  GACCCTGACTCGGGCATCTGAATATTTAGTCAGTCCATACTTGCTACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGACTCGGGCATCTGAATATTTAGTCAGTCCATACTTGCTACCCA  400

seq1  GCAGAAGATTCCTGCACTCTGCTTATGTTATTAAAGGTCAGCAAACATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGATTCCTGCACTCTGCTTATGTTATTAAAGGTCAGCAAACATTG  450

seq1  TATTTAGATTCTTTAAGTTCTCTCTTCATCAAGATTACATAAGGAGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGATTCTTTAAGTTCTCTCTTCATCAAGATTACATAAGGAGAGGA  500

seq1  TAAAGGATCATCATAGTATGTATGTCTAAGATAAACACGGCCAGATTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGATCATCATAGTATGTATGTCTAAGATAAACACGGCCAGATTACT  550

seq1  TCATACACACACACACACACACACACACACACACACACACACACACAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACACACACACACACACACACACACACACACACACACACACACAGAT  600

seq1  AAACTGACATGCTCATCATGTTTTCAATAATGCAATGTAAGGGCAAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACATGCTCATCATGTTTTCAATAATGCAATGTAAGGGCAAATTT  650

seq1  ATTACTTATCTATTTGCTTATATTTATTATTATCTATTTCAACTGAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTATCTATTTGCTTATATTTATTATTATCTATTTCAACTGAATGC  700

seq1  TTTATGATAATATAGGTTTATGGGAACATCAACATCTAGGATTTTAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATAATATAGGTTTATGGGAACATCAACATCTAGGATTTTAGATA  750

seq1  TCCTACAATATAATTGGACATAAAATTTTCAAAATTACTGATCATAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAATATAATTGGACATAAAATTTTCAAAATTACTGATCATAGCAA  800

seq1  AGAAAACAGTATTTTTCTAACTCCAGAGTTACAAAAATAACGTCAAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAGTATTTTTCTAACTCCAGAGTTACAAAAATAACGTCAAAAAA  850

seq1  GGCAGAATGTTCATTTAAGTTCTAATAGATGTTCACAACATGGTAAAGGT  900
      ||||||||||||||||||||||| ||||||| |||| |||||||||| ||
seq2  GGCAGAATGTTCATTTAAGTTCT-ATAGATG-TCAC-ACATGGTAAA-GT  896

seq1  ATATGGCACATGACTGAATGAATACATGTAGCCATGGATCTTACATTGCA  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATATGGCACATGACTGAATG-ATACATGTAGCCATGGATCTTACATTGCA  945

seq1  TTTTTGAGAATTTATGAACTGTGAGGCCAGAAGACATAAAAAAGACTACC  1000
       ||||||| ||||||| ||||||||  |||||||||| |||||||||| |
seq2  -TTTTGAG-ATTTATG-ACTGTGAG--CAGAAGACAT-AAAAAGACTA-C  988

seq1  TACTGTGTAATCAGAAGAACAAACACCACAGGGGGTGGAGGGAAAATCAC  1050
      |||||||| ||||| |||   ||||| ||| ||||||||||| ||||| |
seq2  TACTGTGT-ATCAG-AGA--CAACACTACA-GGGGTGGAGGG-AAATC-C  1031

seq1  ATGATATCAAAGCCTTCGATTAAGCAGAAAGCTCTGGGACTGGTCTTTTA  1100
      |||| |||||   |||||| ||||||| ||||| ||||||||  | ||  
seq2  ATGA-ATCAA--GCTTCGA-TAAGCAG-AAGCT-TGGGACTG--CCTT--  1071

seq1  CCAAATCTGTTTTTTTTTTT  1120
        | ||||||||||||||||
seq2  --ACATCTGTTTTTTTTTTT  1089