BAC Information

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BAC

Clone NameB6Ng01-020O03
Chromosome1 (Build37)
Map Location 113,861,777 - 113,977,599
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh19, EG666578, Dsel, LOC547247
Downstream geneEG626897, LOC666615, LOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020O03.bB6Ng01-020O03.g
ACCDH853553DH853554
length1,164822
definitionDH853553|Mus musculus domesticus DNA, BAC clone: B6Ng01-020O03, 5' end.DH853554|Mus musculus domesticus DNA, BAC clone: B6Ng01-020O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,861,777 - 113,862,964)(113,977,054 - 113,977,599)
sequence
gaattctcttccagtggactctccaaactctttataatgtttgcctgtgg
gactctgcatctgaggagccttaaatattttcatcatatgactgtctaac
aagcatctgcttgacaaaatgaagacattcaatttgtatttttgtatatg
tctgtaaaagtttgcctgttacctgaacaagataatttctacacagaaaa
attgtttattttagagtctctaggataatctagatgtattattattatta
ttattattattattattattattattcaacatttgtccctttggtcattg
attgacatgttcaccattgagcctgtatattactgtgtttcacaataaac
tctctccatcttctatgtagtgatctctgcatctcacttaaattctttcc
ttgaggatttcaagaatacaggaacaactacaccaagaacctagtgatgg
ctttacacatcttcaagtttgaactcccagtataggaggagaattgccaa
tattccttggatatcttttgatatttttaaaatgtattatttgaaattta
tagttgtctgaagaatcagaactaattaactatagtaatatctctaatac
ttgcaaaatattaccttgtcaagaaaactccacacattagaattttctac
ctgaaggttaaatccttaagttcatgtgtgaaactgatctagtcaccttg
aagccaatctggccaccgtggattgtcacattaccactcatgtgtcattt
ctatccctgaaatctcctatataaaacattaggaggtttaacaggtatga
tttgctatctgcatatttcaaaacatttttattatatggaaaatgaaaca
aaagggagaattaaaattattatacttcatatggcagtattcttttactg
atttaacatacacacatattacaaacacacaaaaccatgtgttagtcact
tctgagatgcaaatcatcaagggtgagggcacaggtaaaaccaggttcag
agacagcagtggcttttagaggcatcttgtttgctggtaacttcttttgt
cttagacaaaagtcctatgtatgtctggtgttaaataaggtaataaagca
aggtgctacattttccaccaatacaggcaatatttctatcatttccgttt
atggattaggctaa
gaattcttaacagaggaatcttgaatgggcaaaaaacactttcttactga
ctttgaagtttctgtttttattttcatatgcttgcttgcataacttatgt
atttgctcaaaggtgtgtgagcgcctgtgagtattgcttcagatttgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtaaaagccagagggtgt
tgtcagggaatcttccttgattactcttttacattattctttttgaatca
tggttttaatcaaatactgacctcacaatatggctagtgttttcagtcag
cttgatccatggatcttctgcatctgctcttctggctggaattacaggca
ggctgctatttttacctagcctgtacttaggttcttgggaacaaaattcc
tatcttcgtatgtgtgaggttaagtgctttcatcactgagacatctccct
aaacttgacttctataatgagatctggatattatcagttatataaaatgc
atatataaaaatgtttactgataataaatgttgaatatatttattttata
ctaattattatacacattattttactgtatattgggattataagtcactt
ttctttttgatgtcgttgtatttatttatttacaacttgaagattaactc
ctgacaaacgatgaaatattataaggtacagatcatcttcactgatattc
aatgttgatcaacatctacttttttaagatgcttgcttcatgtgagcatg
cagtttaaataaaattatttaaaggacagttaaacatttaagaaaatctg
tcagatctcataatctggatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_113861777_113862964
seq2: B6Ng01-020O03.b_41_1204

seq1  GAATTCTCTTCCAGTGGACTCTCCAAACTCTTTATAATGTTTGCCTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCAGTGGACTCTCCAAACTCTTTATAATGTTTGCCTGTGG  50

seq1  GACTCTGCATCTGAGGAGCCTTAAATATTTTCATCATATGACTGTCTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGCATCTGAGGAGCCTTAAATATTTTCATCATATGACTGTCTAAC  100

seq1  AAGCATCTGCTTGACAAAATGAAGACATTCAATTTGTATTTTTGTATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTGCTTGACAAAATGAAGACATTCAATTTGTATTTTTGTATATG  150

seq1  TCTGTAAAAGTTTGCCTGTTACCTGAACAAGATAATTTCTACACAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAAAGTTTGCCTGTTACCTGAACAAGATAATTTCTACACAGAAAA  200

seq1  ATTGTTTATTTTAGAGTCTCTAGGATAATCTAGATGTATTATTATTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTATTTTAGAGTCTCTAGGATAATCTAGATGTATTATTATTATTA  250

seq1  TTATTATTATTATTATTATTATTATTCAACATTTGTCCCTTTGGTCATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTATTATTATTATTATTCAACATTTGTCCCTTTGGTCATTG  300

seq1  ATTGACATGTTCACCATTGAGCCTGTATATTACTGTGTTTCACAATAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACATGTTCACCATTGAGCCTGTATATTACTGTGTTTCACAATAAAC  350

seq1  TCTCTCCATCTTCTATGTAGTGATCTCTGCATCTCACTTAAATTCTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCATCTTCTATGTAGTGATCTCTGCATCTCACTTAAATTCTTTCC  400

seq1  TTGAGGATTTCAAGAATACAGGAACAACTACACCAAGAACCTAGTGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGATTTCAAGAATACAGGAACAACTACACCAAGAACCTAGTGATGG  450

seq1  CTTTACACATCTTCAAGTTTGAACTCCCAGTATAGGAGGAGAATTGCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACACATCTTCAAGTTTGAACTCCCAGTATAGGAGGAGAATTGCCAA  500

seq1  TATTCCTTGGATATCTTTTGATATTTTTAAAATGTATTATTTGAAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTGGATATCTTTTGATATTTTTAAAATGTATTATTTGAAATTTA  550

seq1  TAGTTGTCTGAAGAATCAGAACTAATTAACTATAGTAATATCTCTAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTCTGAAGAATCAGAACTAATTAACTATAGTAATATCTCTAATAC  600

seq1  TTGCAAAATATTACCTTGTCAAGAAAACTCCACACATTAGAATTTTCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAATATTACCTTGTCAAGAAAACTCCACACATTAGAATTTTCTAC  650

seq1  CTGAAGGTTAAATCCTTAAGTTCATGTGTGAAACTGATCTAGTCACCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGTTAAATCCTTAAGTTCATGTGTGAAACTGATCTAGTCACCTTG  700

seq1  AAGCCAATCTGGCCACCGTGGATTGTCACATTACCACTCATGTGTCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAATCTGGCCACCGTGGATTGTCACATTACCACTCATGTGTCATTT  750

seq1  CTATCCCTGAAATCTCCTATATAAAACATTAGGAGGTTTAACAGGTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCTGAAATCTCCTATATAAAACATTAGGAGGTTTAACAGGTATGA  800

seq1  TTTGCTATCTGCATATTTCAAAACATTTTTATTATATGGAAAATGAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATCTGCATATTTCAAAACATTTTTATTATATGGAAAATGAAACA  850

seq1  AAAGGGAGAATTAAAATTATTATACTTCATATGGCAGTATTCTTTTACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGAATTAAAATTATTATACTTCATATGGCAGTATTCTTTTACTG  900

seq1  ATTTAACATAACACACATATTACAAACACACAAAACCATGTGTTAGTCAC  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACAT-ACACACATATTACAAACACACAAAACCATGTGTTAGTCAC  949

seq1  TTCTGAGATGCAAAATCATCAAGGGTGAGGGCACAGGTAAAACCAGGTTC  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  TTCTGAGATGC-AAATCATCAAGGGTGAGGGCACAGGTAAAACCAGGTT-  997

seq1  CAGAGAACAGCAGTGGCTTTTAAGAGGGCATCTTGTTTTGCCTGGTAAAA  1050
      ||||| ||||||||||||||| ||| ||||||||||||   |||||  ||
seq2  CAGAG-ACAGCAGTGGCTTTT-AGA-GGCATCTTGTTT--GCTGGT--AA  1040

seq1  CTTCCTTTTGTCATAAGCACAAAAAGTTCCTATGTATGTCT-GTGTATAA  1099
      ||| |||||||| ||   ||||||   |||||||||||||| ||||  ||
seq2  CTT-CTTTTGTCTTA--GACAAAA--GTCCTATGTATGTCTGGTGTTAAA  1085

seq1  TTAGTTAATAAAGCAAGGTGCTACAATATTTCCCACCAATACAGCCAATA  1149
      | || |||||||||||||||||||   |||| |||||||||||| |||||
seq2  TAAGGTAATAAAGCAAGGTGCTAC---ATTTTCCACCAATACAGGCAATA  1132

seq1  AATTTCTCTATCATTTCTGTTTAATTGAATTTAGGCTAA  1188
          | ||||||||||| |||||  || | |||||||||
seq2  ----TTTCTATCATTTCCGTTTA--TGGA-TTAGGCTAA  1164

seq1: chr1_113977054_113977599
seq2: B6Ng01-020O03.g_342_888 (reverse)

seq1  ATATCCAGATTATGAGATTCTGACAGATTTTCTTAAATGTTTAACTGTCC  50
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATATCCAGATTATGAGA-TCTGACAGATTTTCTTAAATGTTTAACTGTCC  49

seq1  TTTAAATTAATTTTATTTAAACTGCATGCTCACATGAAGCAAGCATCTT-  99
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTAAA-TAATTTTATTTAAACTGCATGCTCACATGAAGCAAGCATCTTA  98

seq1  AAAAAGTAGATGTTGATCAACATTGAATATCAGTGAAGATGATCTGTACC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAGATGTTGATCAACATTGAATATCAGTGAAGATGATCTGTACC  148

seq1  TTATAATATTTCATCGTTTGTCAGGAGTTAATCTTCAAGTTGT-AATAAA  198
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTATAATATTTCATCGTTTGTCAGGAGTTAATCTTCAAGTTGTAAATAAA  198

seq1  TAAATACAACGACATCAAAAAGAAAAGTGACTTATAAT-CCAATATACAG  247
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAAATACAACGACATCAAAAAGAAAAGTGACTTATAATCCCAATATACAG  248

seq1  TAAAATAATGTGTATAATAATTAGTATAAAATAAATATATTCAACATTTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATGTGTATAATAATTAGTATAAAATAAATATATTCAACATTTA  298

seq1  TTATCAGTAAACATTTTTATATATGCATTTTATATAACTGATAATATCCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGTAAACATTTTTATATATGCATTTTATATAACTGATAATATCCA  348

seq1  GATCTCATTATAGAAGTCAAGTTTAGGGAGATGTCTCAGTGATGAAAGCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCATTATAGAAGTCAAGTTTAGGGAGATGTCTCAGTGATGAAAGCA  398

seq1  CTTAACCTCACACATACGAAGATAGGAATTTTGTTCCCAAGAACCTAAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCTCACACATACGAAGATAGGAATTTTGTTCCCAAGAACCTAAGT  448

seq1  ACAGGCTAGGTAAAAATAGCAGCCTGCCTGTAATTCCAGCCAGAAGAGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTAGGTAAAAATAGCAGCCTGCCTGTAATTCCAGCCAGAAGAGCA  498

seq1  GATGCAGAAGATCCATGGATCAAGCTGACTGAAAACACTAGCCATATTG  546
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAAGATCCATGGATCAAGCTGACTGAAAACACTAGCCATATTG  547