BAC Information

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BAC

Clone NameB6Ng01-022A10
Chromosome1 (Build37)
Map Location 83,708,196 - 83,828,102
singlet/doubletdoublet
Overlap genenone
Upstream geneCol4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream gene5033414K04Rik, LOC100039638, Dner, Trip12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022A10.bB6Ng01-022A10.g
ACCDH854369DH854370
length1,048558
definitionDH854369|Mus musculus domesticus DNA, BAC clone: B6Ng01-022A10, 5' end.DH854370|Mus musculus domesticus DNA, BAC clone: B6Ng01-022A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,827,058 - 83,828,102)(83,708,196 - 83,708,759)
sequence
gaattcagttttcccatactccttcctcatccttcggcttagattaagaa
agcaagaggaaaggctgcagaactctctacatttaaccttggtaggattt
tgtttgttttgttgttgttgtttgcttgatttgtttttattttacatata
acctcatttagtcctaacagaaccaggaaaggcctcagctaaaagtcaca
gatgtgccaagaagcatagggttccatggaagagttagggaaactcaccc
tgagccacacagctcaaaagggctaagcaaggcttggcatgaggaaaggg
taaaactcagacacagagcaaggaaatgcagctgcttgtcctggagatct
tccatggatcaggaagggaagcattctgtttgcttctagaagcagagctt
gttcaagctgctaaaatggataatcatggctttggactgttacaatgggt
tagcttctgtaccttatttccagattctctttgttagagccttttcagaa
tgtcttcaaaaatttctatgggaacaggcaaattccccctaacttggtac
ctcttaccaaggctgtggacagaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
atcactgagagagagttaataaaacactgaagcccagagatctggtataa
ctggtctgtagtgggctttgggcatctgtgtatttcaaaagttttcaagg
gattttactgtgcggccagcattgagcttaaaattatgtactagcttcaa
accatgtaaccctgtgtatcaagcaatgagtagaggatcaaaatatgttg
tgttaaatccatgcccagtttctgaatgtgaaaagtgaaatccattctcc
ttttcaagtgacaaagcatctgtgactacagcttggatagtggaaaggct
tggtgccttcagaatgcaagaggtggcacccgatgcccgcaaatataaca
gaggattgttggggccgatgtggcgttggattgaccggcgattttcta
ttacatggctacatgtatgtgcaggatgttaatacagctgtgtctttgcc
tcatacagtcctgctagattctcctcttgtgttatttatgatgcttggag
ttgggtgaggcaaggggagtacatgggtgataactgaaatagaaagggga
ggaggctcaagaatggcattatttttgaaattgggataaaaaattaccca
acattttaggcccccgaataaaatagacatgtaaaacctggacagagctt
atgtattctatcatgcatatacaaaatgcagctgtttgaaatatgttata
tggtctagtcacacctgtgcccttacactatcagtctctaacaaaacctt
ctgatttcatctttacttctactccctgcatctagagcttttatcttgct
tgtgttgggtacagtccattattcaagagaatgactatgtccttctgcct
ccctacatttttcttcctcattctctttccttcctttcctttcctttcct
ttcctttcctttcctttcctttcctttcctttcctttcctctcctctcct
cccctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_83827058_83828102
seq2: B6Ng01-022A10.b_46_1093 (reverse)

seq1  TAGAAAAT-GCAGTCCAATCAAACG-CACATCTGCCCCAAC-ATCCTCTG  47
      |||||||| || |  ||||| |||| |||||| |||||||| ||||||||
seq2  TAGAAAATCGCCGGTCAATCCAACGCCACATCGGCCCCAACAATCCTCTG  50

seq1  TTATAATTTGCGGGCACTGGGTGCCACCTCTTGCATTCTGAAGGCACCAG  97
      |||| |||||||||||  ||||||||||||||||||||||||||||||| 
seq2  TTAT-ATTTGCGGGCATCGGGTGCCACCTCTTGCATTCTGAAGGCACCAA  99

seq1  GCCTTTCCAACTATCCAAGCTGTAGTCACAGATGCTTTGTCACTTTGAAA  147
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  GCCTTTCC-ACTATCCAAGCTGTAGTCACAGATGCTTTGTCAC-TTGAAA  147

seq1  AGGAGAATGGATTTCACTTTTCACATTCAGAAACTGGGCATGGATTTTAA  197
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGAGAATGGATTTCACTTTTCACATTCAGAAACTGGGCATGGA-TTTAA  196

seq1  CACAACATATTTTGATCCTCTACTCATTGCTTGATACACAGGGTTACATG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACATATTTTGATCCTCTACTCATTGCTTGATACACAGGGTTACATG  246

seq1  GTTTGAAGCTAGTACATAATTTTAAGCTCAATGCTGGCCGCACAGTAAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAGCTAGTACATAATTTTAAGCTCAATGCTGGCCGCACAGTAAAA  296

seq1  TCCCTTGAAAACTTTTGAAATACACAGATGCCCAAAGCCCACTACAGACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGAAAACTTTTGAAATACACAGATGCCCAAAGCCCACTACAGACC  346

seq1  AGTTATACCAGATCTCTGGGCTTCAGTGTTTTATTAACTCTCTCTCAGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATACCAGATCTCTGGGCTTCAGTGTTTTATTAACTCTCTCTCAGTG  396

seq1  A----TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  443
      |    |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  446

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTGTCCACAGCCTTGGTAAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTGTCCACAGCCTTGGTAAG  496

seq1  AGGTACCAAGTTAGGGGGAATTTGCCTGTTCCCATAGAAATTTTTGAAGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCAAGTTAGGGGGAATTTGCCTGTTCCCATAGAAATTTTTGAAGA  546

seq1  CATTCTGAAAAGGCTCTAACAAAGAGAATCTGGAAATAAGGTACAGAAGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGAAAAGGCTCTAACAAAGAGAATCTGGAAATAAGGTACAGAAGC  596

seq1  TAACCCATTGTAACAGTCCAAAGCCATGATTATCCATTTTAGCAGCTTGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCATTGTAACAGTCCAAAGCCATGATTATCCATTTTAGCAGCTTGA  646

seq1  ACAAGCTCTGCTTCTAGAAGCAAACAGAATGCTTCCCTTCCTGATCCATG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTCTGCTTCTAGAAGCAAACAGAATGCTTCCCTTCCTGATCCATG  696

seq1  GAAGATCTCCAGGACAAGCAGCTGCATTTCCTTGCTCTGTGTCTGAGTTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCTCCAGGACAAGCAGCTGCATTTCCTTGCTCTGTGTCTGAGTTT  746

seq1  TACCCTTTCCTCATGCCAAGCCTTGCTTAGCCCTTTTGAGCTGTGTGGCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTTCCTCATGCCAAGCCTTGCTTAGCCCTTTTGAGCTGTGTGGCT  796

seq1  CAGGGTGAGTTTCCCTAACTCTTCCATGGAACCCTATGCTTCTTGGCACA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGAGTTTCCCTAACTCTTCCATGGAACCCTATGCTTCTTGGCACA  846

seq1  TCTGTGACTTTTAGCTGAGGCCTTTCCTGGTTCTGTTAGGACTAAATGAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGACTTTTAGCTGAGGCCTTTCCTGGTTCTGTTAGGACTAAATGAG  896

seq1  GTTATATGTAAAATAAAAACAAATCAAGCAAACAACAACAACAAAACAAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATGTAAAATAAAAACAAATCAAGCAAACAACAACAACAAAACAAA  946

seq1  CAAAATCCTACCAAGGTTAAATGTAGAGAGTTCTGCAGCCTTTCCTCTTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCCTACCAAGGTTAAATGTAGAGAGTTCTGCAGCCTTTCCTCTTG  996

seq1  CTTTCTTAATCTAAGCCGAAGGATGAGGAAGGAGTATGGGAAAACTGAAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTAATCTAAGCCGAAGGATGAGGAAGGAGTATGGGAAAACTGAAT  1046

seq1  TC  1045
      ||
seq2  TC  1048

seq1: chr1_83708196_83708759
seq2: B6Ng01-022A10.g_67_630

seq1  GAATTCTTACATGGCTACATGTATGTGCAGGATGTTAATACAGCTGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACATGGCTACATGTATGTGCAGGATGTTAATACAGCTGTGTC  50

seq1  TTTGCCTCATACAGTCCTGCTAGATTCTCCTCTTGTGTTATTTATGATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCATACAGTCCTGCTAGATTCTCCTCTTGTGTTATTTATGATGC  100

seq1  TTGGAGTTGGGTGAGGCAAGGGGAGTACATGGGTGATAACTGAAATAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTGGGTGAGGCAAGGGGAGTACATGGGTGATAACTGAAATAGAA  150

seq1  AGGGGAGGAGGCTCAAGAATGGCATTATTTTTGAAATTGGGATAAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGAGGCTCAAGAATGGCATTATTTTTGAAATTGGGATAAAAAAT  200

seq1  TACCCAACATTTTAGGCCCCCGAATAAAATAGACATGTAAAACCTGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAACATTTTAGGCCCCCGAATAAAATAGACATGTAAAACCTGGACA  250

seq1  GAGCTTATGTATTCTATCATGCATATACAAAATGCAGCTGTTTGAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTATGTATTCTATCATGCATATACAAAATGCAGCTGTTTGAAATAT  300

seq1  GTTATATGGTCTAGTCACACCTGTGCCCTTACACTATCAGTCTCTAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATGGTCTAGTCACACCTGTGCCCTTACACTATCAGTCTCTAACAA  350

seq1  AACCTTCTGATTTCATCTTTACTTCTACTCCCTGCATCTAGAGCTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCTGATTTCATCTTTACTTCTACTCCCTGCATCTAGAGCTTTTAT  400

seq1  CTTGCTTGTGTTGGGTACAGTCCATTATTCAAGAGAATGACTATGTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGTGTTGGGTACAGTCCATTATTCAAGAGAATGACTATGTCCTT  450

seq1  CTGCCTCCCTACATTTTTCTTCCTCATTCTCTTTCCTTCCTTTCCTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCTACATTTTTCTTCCTCATTCTCTTTCCTTCCTTTCCTTTCC  500

seq1  TTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTCTCC  550

seq1  TCTCCTCCCCTCTC  564
      ||||||||||||||
seq2  TCTCCTCCCCTCTC  564