BAC Information

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BAC

Clone NameB6Ng01-023B11
Chromosome1 (Build37)
Map Location 152,607,376 - 152,712,582
singlet/doubletdoublet
Overlap genenone
Upstream genePla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534
Downstream geneEG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023B11.bB6Ng01-023B11.g
ACCDH855112DH855113
length281991
definitionDH855112|Mus musculus domesticus DNA, BAC clone: B6Ng01-023B11, 5' end.DH855113|Mus musculus domesticus DNA, BAC clone: B6Ng01-023B11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,607,376 - 152,607,656)(152,711,578 - 152,712,582)
sequence
gaattcaacctataaaaatgaccagtagatattttaaatatagttcacaa
tgtaacacattttttgcttatttcatttctataatttaattctttctaga
gtgaacatagtcaattaatctaaaacatgaagcttgatgtggtatgtgat
aactcaagaggcagagagatctctgtgatttcagatcagcctgttcaaat
agtttcaggcaagacagagctacagagtgagaacctatcttgatgatgat
gatgaggaggaggaggaggaggaggaagagg
gaattctttgtttcaaaacttaaagtgatgcattgaattagatgattgcc
aaatgtaaaatatacctacctcttgattgttatctgacatatttccgttt
aaggtaaaactttattttttttttatttttaaaatttataaaaatcattg
cagataaaaagaaatcacatacccaaattaactagacccaaagaatatac
agttcaattaatttttaaacatttatagtgaccatgtgaaatagaactgt
ggggtttgatactggattttatgatttcactatcaaattttaatgaactt
attcatcaccaaaagtgagaaatccacgacagaattttaactagtaaggt
aattgcttttcttgctttggcacttcttttacaagttattattttacatt
ttcatttttgttattcagtgtaaaatagaagctgttaaatggcctttaaa
tatatttttctcaggcttagagaggaaacttaaatctgtttgtttttata
gttttattcacatttctatgatcttcaacttttaaatttgtactgagaca
aaccaccataaactctacattttgagattcattgataaaaatgtacactt
ctagtaacatttttcttatctgtctaaacttaagtactaaaactaaattt
atgtattgaaacatcataaaaaacctgtaaattagccaagtgattaaatt
ttacctatgtgtacagctatagactatgtgtgtgtgtgtgtgtgtgtgtg
tgtgtatacgcgcctatcaaactttgttttataagtttattacccctata
aactatgatcaaataaattaattttacttaattaagtaaagcaatttgaa
tttgtctctgatacttcaattaagaggtttaccaagacttaagggcatgc
attgacctttaaatacaagctagaatgaagtattcttaaaaaatccatag
ccattccaagtggtgcaataaaacagtgtaaatcatagaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_152607376_152607656
seq2: B6Ng01-023B11.b_32_312

seq1  GAATTCAACCTATAAAAATGACCAGTAGATATTTTAAATATAGTTCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTATAAAAATGACCAGTAGATATTTTAAATATAGTTCACAA  50

seq1  TGTAACACATTTTTTGCTTATTTCATTTCTATAATTTAATTCTTTCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACACATTTTTTGCTTATTTCATTTCTATAATTTAATTCTTTCTAGA  100

seq1  GTGAACATAGTCAATTAATCTAAAACATGAAGCTTGATGTGGTATGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATAGTCAATTAATCTAAAACATGAAGCTTGATGTGGTATGTGAT  150

seq1  AACTCAAGAGGCAGAGAGATCTCTGTGATTTCAGATCAGCCTGTTCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGAGGCAGAGAGATCTCTGTGATTTCAGATCAGCCTGTTCAAAT  200

seq1  AGTTTCAGGCAAGACAGAGCTACAGAGTGAGAACCTATCTTGATGATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGGCAAGACAGAGCTACAGAGTGAGAACCTATCTTGATGATGAT  250

seq1  GATGAGGAGGAGGAGGAGGAGGAGGAAGAGG  281
      |||||||||||||||||||||||||||||||
seq2  GATGAGGAGGAGGAGGAGGAGGAGGAAGAGG  281

seq1: chr1_152711578_152712582
seq2: B6Ng01-023B11.g_71_1061 (reverse)

seq1  TGTCTATGAGTTTAACACTGTGTTTTATTGGCACCACTTTGGAATGGCCT  50
      |||||||||  || ||||  ||||||||| ||||||| ||||||||||  
seq2  TGTCTATGA--TTTACAC--TGTTTTATT-GCACCAC-TTGGAATGGC--  42

seq1  GCTGGATTTTATTAGGAATGCTTCATTCTAGGCTAGTATTTAAAAGGTCA  100
        |||||||| ||| |||| |||||||||| ||| |||||| ||||||||
seq2  TATGGATTTT-TTAAGAATACTTCATTCTA-GCTTGTATTT-AAAGGTCA  89

seq1  GTGCATTGACCTTAAAGTCTTTGGTAAAACCTCTTAATTGAAGTTATCAG  150
       |||| || |||| ||||| ||||| ||||||||||||||||| ||||||
seq2  ATGCA-TGCCCTT-AAGTC-TTGGT-AAACCTCTTAATTGAAG-TATCAG  134

seq1  AGACAAATTCAAATTGCTTTACTTTATTAAGT-AAATTAATTTATTTGAT  199
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  AGACAAATTCAAATTGCTTTACTTAATTAAGTAAAATTAATTTATTTGAT  184

seq1  CATAGTTTATAGGGGTAATAAACTTAT-AAACAAAGTTTGATAGGTGTGT  248
      ||||||||||||||||||||||||||| ||||||||||||||||| | ||
seq2  CATAGTTTATAGGGGTAATAAACTTATAAAACAAAGTTTGATAGGCGCGT  234

seq1  ATACACACACACACACACACACACACACACATAGTCTATAGCTGTACACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACACACACACACACACACATAGTCTATAGCTGTACACA  284

seq1  TAGGTAAAATTTAATCACTTGGCTAATTTACAGGTTTTTTATGATGTTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAAATTTAATCACTTGGCTAATTTACAGGTTTTTTATGATGTTTC  334

seq1  AATACATAAATTTAGTTTTAGTACTTAAGTTTAGACAGATAAGAAAAATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAAATTTAGTTTTAGTACTTAAGTTTAGACAGATAAGAAAAATG  384

seq1  TTACTAGAAGTGTACATTTTTATCAATGAATCTCAAAATGTAGAGTTTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGAAGTGTACATTTTTATCAATGAATCTCAAAATGTAGAGTTTAT  434

seq1  GGTGGTTTGTCTCAGTACAAATTTAAAAGTTGAAGATCATAGAAATGTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTTGTCTCAGTACAAATTTAAAAGTTGAAGATCATAGAAATGTGA  484

seq1  ATAAAACTATAAAAACAAACAGATTTAAGTTTCCTCTCTAAGCCTGAGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTATAAAAACAAACAGATTTAAGTTTCCTCTCTAAGCCTGAGAA  534

seq1  AAATATATTTAAAGGCCATTTAACAGCTTCTATTTTACACTGAATAACAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTTAAAGGCCATTTAACAGCTTCTATTTTACACTGAATAACAA  584

seq1  AAATGAAAATGTAAAATAATAACTTGTAAAAGAAGTGCCAAAGCAAGAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAATGTAAAATAATAACTTGTAAAAGAAGTGCCAAAGCAAGAAA  634

seq1  AGCAATTACCTTACTAGTTAAAATTCTGTCGTGGATTTCTCACTTTTGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTACCTTACTAGTTAAAATTCTGTCGTGGATTTCTCACTTTTGGT  684

seq1  GATGAATAAGTTCATTAAAATTTGATAGTGAAATCATAAAATCCAGTATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATAAGTTCATTAAAATTTGATAGTGAAATCATAAAATCCAGTATC  734

seq1  AAACCCCACAGTTCTATTTCACATGGTCACTATAAATGTTTAAAAATTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCACAGTTCTATTTCACATGGTCACTATAAATGTTTAAAAATTAA  784

seq1  TTGAACTGTATATTCTTTGGGTCTAGTTAATTTGGGTATGTGATTTCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTGTATATTCTTTGGGTCTAGTTAATTTGGGTATGTGATTTCTTT  834

seq1  TTATCTGCAATGATTTTTATAAATTTTAAAAATAAAAAAAAAATAAAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGCAATGATTTTTATAAATTTTAAAAATAAAAAAAAAATAAAGTT  884

seq1  TTACCTTAAACGGAAATATGTCAGATAACAATCAAGAGGTAGGTATATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTAAACGGAAATATGTCAGATAACAATCAAGAGGTAGGTATATTT  934

seq1  TACATTTGGCAATCATCTAATTCAATGCATCACTTTAAGTTTTGAAACAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGGCAATCATCTAATTCAATGCATCACTTTAAGTTTTGAAACAA  984

seq1  AGAATTC  1005
      |||||||
seq2  AGAATTC  991