BAC Information

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BAC

Clone NameB6Ng01-023O04
Chromosome1 (Build37)
Map Location 56,239,579 - 56,240,625
singlet/doubletsinglet
Overlap genenone
Upstream geneRftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023O04.bB6Ng01-023O04.g
ACCDH855681DH855682
length1,0371,022
definitionDH855681|Mus musculus domesticus DNA, BAC clone: B6Ng01-023O04, 5' end.DH855682|Mus musculus domesticus DNA, BAC clone: B6Ng01-023O04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcacaacatacctatgtatgtagacaaaatgtattatagttcc
tctaagccagtggttctcagcctatggttcatgacccttttggggtcctc
aaatgagatgtcctaaatatcagttatttacattgggatttataacagta
gcagagttacacttatgaagtagcaatgaaaataatttatgattggggtc
atggcaacattcaggccaagaaccacagctaaactcttcttggtgctcgg
gaatgtgggagtttctaagtgagatgttttttaagtaaggctccattgta
ttgtctattagaggcaggtgttttctttatttccccaaactgaaggatgc
ttatttgagcagttggttatatcatacaatttaagtgagatgttctgaag
acttagtgagtgtctcaatgaggccagtccttcactctcttaaaactatg
agcaccagcatccaccagaatgtgtctttagagcctctggagatggtaag
gccttatttccctttgctcaaagacagttttgtagagtgagaaccagttt
acacccaaatcaaagaatagtgctattatgaagtggcagttaagtgcaca
ctaaattcttagaaaagttgtacccttcactcaatgtctgctcctggacc
agcagtgtgggcaatactgggagcttgctacaaacgctcatcggaggcct
aggccagacttacagaaattggatttgtatcttagtatgtttgagtgtta
cattttaagcactgaaaagcagccctgagaaatatgcatggtggtgccat
taattcagataaagactctgaggctcccagaggctcaagtgtgcagcttg
cttgagctcagtctgttggaagctcacattcacacgtttgcaccacagtt
cgctgccttcagcgcaggagccagctttaaagacaagtgcaaaatgtcac
caatctcccacccctctattttactagcttcagtgtctggcacggctgtg
ctgaggactagcatggggattatgcattactgcagga
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacagtatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttgggagctgagata
aaaggatggaccatgtagacactagcatatccggggatccatctccatta
tcagcttccaaatgctgacaccattgcatacactagcaagattatgctga
aaggaccctgatatagctgtctcttgtcagatatggcttgggcttagcaa
acatagaagtggaagctcacagtcggttttggatggatcacatggcccca
atgaaggagctagaaaatactcaagaatctaaagggatcttgaatccatg
gttgatatatttttaactatcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_56239579_56240625
seq2: B6Ng01-023O04.b_43_1079

seq1  GAATTCTTCACAACATACCTATGTATGTAGACAAAATGTATTATAGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACAACATACCTATGTATGTAGACAAAATGTATTATAGTTCC  50

seq1  TCTAAGCCAGTGGTTCTCAGCCTATGGTTCATGACCCTTTTGGGGTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCCAGTGGTTCTCAGCCTATGGTTCATGACCCTTTTGGGGTCCTC  100

seq1  AAATGAGATGTCCTAAATATCAGTTATTTACATTGGGATTTATAACAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGATGTCCTAAATATCAGTTATTTACATTGGGATTTATAACAGTA  150

seq1  GCAGAGTTACACTTATGAAGTAGCAATGAAAATAATTTATGATTGGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTTACACTTATGAAGTAGCAATGAAAATAATTTATGATTGGGGTC  200

seq1  ATGGCAACATTCAGGCCAAGAACCACAGCTAAACTCTTCTTGGTGCTCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAACATTCAGGCCAAGAACCACAGCTAAACTCTTCTTGGTGCTCGG  250

seq1  GAATGTGGGAGTTTCTAAGTGAGATGTTTTTTAAGTAAGGCTCCATTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGGGAGTTTCTAAGTGAGATGTTTTTTAAGTAAGGCTCCATTGTA  300

seq1  TTGTCTATTAGAGGCAGGTGTTTTCTTTATTTCCCCAAACTGAAGGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTATTAGAGGCAGGTGTTTTCTTTATTTCCCCAAACTGAAGGATGC  350

seq1  TTATTTGAGCAGTTGGTTATATCATACAATTTAAGTGAGATGTTCTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAGCAGTTGGTTATATCATACAATTTAAGTGAGATGTTCTGAAG  400

seq1  ACTTAGTGAGTGTCTCAATGAGGCCAGTCCTTCACTCTCTTAAAACTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTGAGTGTCTCAATGAGGCCAGTCCTTCACTCTCTTAAAACTATG  450

seq1  AGCACCAGCATCCACCAGAATGTGTCTTTAGAGCCTCTGGAGATGGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAGCATCCACCAGAATGTGTCTTTAGAGCCTCTGGAGATGGTAAG  500

seq1  GCCTTATTTCCCTTTGCTCAAAGACAGTTTTGTAGAGTGAGAACCAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATTTCCCTTTGCTCAAAGACAGTTTTGTAGAGTGAGAACCAGTTT  550

seq1  ACACCCAAATCAAAGAATAGTGCTATTATGAAGTGGCAGTTAAGTGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAAATCAAAGAATAGTGCTATTATGAAGTGGCAGTTAAGTGCACA  600

seq1  CTAAATTCTTAGAAAAGTTGTACCCTTCACTCAATGTCTGCTCCTGGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTCTTAGAAAAGTTGTACCCTTCACTCAATGTCTGCTCCTGGACC  650

seq1  AGCAGTGTGGGCAATACTGGGAGCTTGCTACAAACGCTCATCGGAGGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTGGGCAATACTGGGAGCTTGCTACAAACGCTCATCGGAGGCCT  700

seq1  AGGCCAGACTTACAG-AATTGGATTTGTATCTTAGTATGTTTGAGTGTTA  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGCCAGACTTACAGAAATTGGATTTGTATCTTAGTATGTTTGAGTGTTA  750

seq1  CATTTTAAGCACTGAAAAGCAGCCCTGAGAAATATGCATGGTGGTGCCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAGCACTGAAAAGCAGCCCTGAGAAATATGCATGGTGGTGCCAT  800

seq1  TAATTCAGATAAGGACTCTGAGGCTCCCAGAGGCTCAAGTGTGCAGCTTG  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAATTCAGATAAAGACTCTGAGGCTCCCAGAGGCTCAAGTGTGCAGCTTG  850

seq1  CTTTGAGCTCAGGTCTGTTGGAAGCTCACATTCACACGTTTGCACCACAG  899
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  C-TTGAGCTCA-GTCTGTTGGAAGCTCACATTCACACGTTTGCACCACAG  898

seq1  TTCGCTGCCTTCAGCGCAGGGAGCCAGCTTTTAAAGACAAGTGCAAAATT  949
      |||||||||||||||||| ||||||||| ||||||||||||||||||| |
seq2  TTCGCTGCCTTCAGCGCA-GGAGCCAGC-TTTAAAGACAAGTGCAAAA-T  945

seq1  GTCACCAATCTCCCACCCCCTCTATTTTTACTAGCTTTCGAGTGTTCTGG  999
      ||||||||||||||| |||||||| ||||||||||||   |||| |||||
seq2  GTCACCAATCTCCCA-CCCCTCTA-TTTTACTAGCTT--CAGTG-TCTGG  990

seq1  CACGGCTGTGCTGAAGGACTAGCAGGGGAGTGATGCATTACTGCAGGA  1047
      ||||||||||||| |||||||||| |||  | ||||||||||||||||
seq2  CACGGCTGTGCTG-AGGACTAGCATGGGGATTATGCATTACTGCAGGA  1037