BAC Information

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BAC

Clone NameB6Ng01-024G12
Chromosome1 (Build37)
Map Location 82,797,160 - 82,882,441
singlet/doubletdoublet
Overlap geneHrb
Upstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491
Downstream geneA030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024G12.bB6Ng01-024G12.g
ACCDH856051DH856052
length4701,150
definitionDH856051|Mus musculus domesticus DNA, BAC clone: B6Ng01-024G12, 5' end.DH856052|Mus musculus domesticus DNA, BAC clone: B6Ng01-024G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,797,160 - 82,797,634)(82,881,265 - 82,882,441)
sequence
caatatcttaaagggaagagagaaattgggcaagtgggtcagaaatatat
tatgcttttcattgtgtgtcagtagctcaaagtgtggagacccttaagag
attcaagagaaggtggggctgttccctaatgggtgggagtgagatgagcc
ccacccccaccccaagctctcccccaatcgtgcctggctcaatggccagg
aaacaagttggtgttgaaaactacaccccaaagatattcctgctgtaccc
aacatgcctccagggactcccccaaactattacaaagggaacaagtcaag
aaatgggggctaagtccagattcaatgatacacatcttttttttttagca
ctagtgatgtaaaggcaggaaatcaggaattcagggctacatgtgactct
gtgtccaggaaaacaacacaaaccaagcaaacagcaaacaaacaacaaca
aaatatatatgtgaaaaaga
gaattccattatctgacagcataaacatttttaataactatatctctaag
caaaaagaacttttattttatatttatactaattcacataataatgtata
tattatgtatatattagcatctgtttgacatgtaggatgaacatgtagtt
ttatgcacacactgaacaacaaatatgagtacttcattttctttgacaag
acaccaaaatcggaggtttcctaaagtcaactgcaatggggaaactgaaa
ctgatgaactttcccactcacagagccaaagttttaatgactttcaggga
ctccaaacaattttccatcttagtggctatttaacaaaatgaaaatactt
attcaatgacctgtgtcaatcttccaaatgctgatatactttcatatatg
aaatttaaaattcactttcatttctatcattaatcatttcatcggagtat
cggaaagctgtcatttatggttgaatatacaaatttcccaaaattctaat
atttgcttgaaagcctcaattacaagttgtgggttttttgtttttgaaac
aaagtttcacatagcacaggctagcctggaatctgctacacagggtgttc
ttgaacttctagtctttctgcctctacatccaggtgctggtaattcccca
tttacaatgctaggattctatccagagttggtgcatgcttggtaagcaag
gctgggattctatccagagcttggtgcatgcttggtaagcaaggccgccc
gagctcggcctgaagcagaaagcacagccttcacagctcaaatccaaacc
accataaaatgagcggctggtctgtctcaaaactcaacaaccataaattt
ctttcatcagaccatctgtttaacaatgcgctcaaactacttgatacaca
cataacatgaacaggcagaaaatacatttaatggaaaacattgaataaag
ttgaaacgttgtaatttttaccaagaatattagttagaaaactcatcaac
acgattgtagtaagaggaaatggcgcatgcgcacttgagagcatgagtaa
atctgagtgaactcaaactgtttgttgttggaaagaaagcccaataagcc
ctaggagcctatataggagatgcgacttgtggagagagtgtcactgtggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82797160_82797634
seq2: B6Ng01-024G12.b_45_520

seq1  GAATTCCAATATCTTAAAGGGAAGAGAGAAATTGGGCAAGTGGGTCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATATCTTAAAGGGAAGAGAGAAATTGGGCAAGTGGGTCAGAA  50

seq1  ATATATTATGCTTTTCATTGTGTGTCAGTAGCTCAAAGTGTGGAGACCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATGCTTTTCATTGTGTGTCAGTAGCTCAAAGTGTGGAGACCCT  100

seq1  TAAGAGATTCAAGAGAAGGTGGGGCTGTTCCCTAATGGGTGGGAGTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGATTCAAGAGAAGGTGGGGCTGTTCCCTAATGGGTGGGAGTGAGA  150

seq1  TGAGCCCCACCCCCACCCCAAGCTCTCCCCCAATCGTGCCTGGCTCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCCACCCCCACCCCAAGCTCTCCCCCAATCGTGCCTGGCTCAATG  200

seq1  GCCAGGAAACAAGTTGGTGTTGAAAACTACACCCCAAAGATATTCCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAACAAGTTGGTGTTGAAAACTACACCCCAAAGATATTCCTGCT  250

seq1  GTACCCAACATGCCTCCAGGGACTCCCCCAAACTATTACAAAGGGAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCAACATGCCTCCAGGGACTCCCCCAAACTATTACAAAGGGAACAA  300

seq1  GTCAAGAAATGGGGGCTAAGTCCAGATTCAATGATACACATC-TCTACTC  349
      |||||||||||||||||||||||||||||||||||||||||| | |  | 
seq2  GTCAAGAAATGGGGGCTAAGTCCAGATTCAATGATACACATCTTTTTTTT  350

seq1  CAAGCACTAGTGATGTAAAGGCAGGAAATCAGGAATTCAGGGCTACATGT  399
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACTAGTGATGTAAAGGCAGGAAATCAGGAATTCAGGGCTACATGT  400

seq1  GACTCTGTGTCCAGGAAAACAACACAAACCAAGCAAACAGCAAACAAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGTGTCCAGGAAAACAACACAAACCAAGCAAACAGCAAACAAACA  450

seq1  ACAACAAAATATATATGTGAAAAAGA  475
      ||||||||||||||||||||||||||
seq2  ACAACAAAATATATATGTGAAAAAGA  476

seq1: chr1_82881265_82882441
seq2: B6Ng01-024G12.g_67_1216 (reverse)

seq1  CCCACAGTGACACACTGCCTCCAACAAGGCTGCATCTCCTAATAGTGCCT  50
      ||||||||||||| ||  |||| ||||| | ||||||||| |||  | ||
seq2  CCCACAGTGACACTCT--CTCC-ACAAGTC-GCATCTCCT-ATATAGGCT  45

seq1  CCCTAGGGGCTTATGGGGGCTGTTCCTATTCAAACCACCAAACCAAGTGT  100
       |||| |||||||| |||    || || ||| |||     ||| ||  ||
seq2  -CCTA-GGGCTTATTGGG---CTTTCT-TTCCAAC-----AACAAACAGT  84

seq1  TTGAGTCTCACTCAGATTTTACTCATGCTCTCAAGTTGCGCATGCCGCCA  150
      |||||| ||||||||| |||||||||||||||||| |||||||| |||||
seq2  TTGAGT-TCACTCAGA-TTTACTCATGCTCTCAAG-TGCGCATG-CGCCA  130

seq1  TTTCCCTCTTTACCTTACAATCGTGTTGATGAGTTTTTCTAACTAATATT  200
      ||| |||| ||||  |||||||||||||||||| ||||||||||||||||
seq2  TTT-CCTC-TTAC--TACAATCGTGTTGATGAG-TTTTCTAACTAATATT  175

seq1  CTTGGTAAAAATTACAACCGTTTTCAACTTTATTCAATGTTTTCCATTAA  250
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  CTTGGTAAAAATTACAAC--GTTTCAACTTTATTCAATGTTTTCCATTAA  223

seq1  ATGTATTTTCTGCCTGTTCATGTTATGTGTGTATCAAGTAGTTTGAGCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTTCTGCCTGTTCATGTTATGTGTGTATCAAGTAGTTTGAGCGC  273

seq1  ATTGTTAAACAGATGGTCTGATGAAAGAAATTTATGGTTGTTGAGTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAAACAGATGGTCTGATGAAAGAAATTTATGGTTGTTGAGTTTTG  323

seq1  AGACAGACCAGCCGCTCATTTTATGGTGGTTTGGATTTGAGCTGTGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACCAGCCGCTCATTTTATGGTGGTTTGGATTTGAGCTGTGAAGG  373

seq1  CTGTGCTTTCTGCTTCAGGCCGAGCTCGGGCGGCCTTGCTTACCAAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTTCTGCTTCAGGCCGAGCTCGGGCGGCCTTGCTTACCAAGCAT  423

seq1  GCACCAAGCTCTGGATAGAATCCCAGCCTTGCTTACCAAGCATGCACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAAGCTCTGGATAGAATCCCAGCCTTGCTTACCAAGCATGCACCAA  473

seq1  CTCTGGATAGAATCCTAGCATTGTAAATGGGGAATTACCAGCACCTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGATAGAATCCTAGCATTGTAAATGGGGAATTACCAGCACCTGGAT  523

seq1  GTAGAGGCAGAAAGACTAGAAGTTCAAGAACACCCTGTGTAGCAGATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGCAGAAAGACTAGAAGTTCAAGAACACCCTGTGTAGCAGATTCC  573

seq1  AGGCTAGCCTGTGCTATGTGAAACTTTGTTTCAAAAACAAAAAACCCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGCCTGTGCTATGTGAAACTTTGTTTCAAAAACAAAAAACCCACA  623

seq1  ACTTGTAATTGAGGCTTTCAAGCAAATATTAGAATTTTGGGAAATTTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTAATTGAGGCTTTCAAGCAAATATTAGAATTTTGGGAAATTTGTA  673

seq1  TATTCAACCATAAATGACAGCTTTCCGATACTCCGATGAAATGATTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAACCATAAATGACAGCTTTCCGATACTCCGATGAAATGATTAATG  723

seq1  ATAGAAATGAAAGTGAATTTTAAATTTCATATATGAAAGTATATCAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATGAAAGTGAATTTTAAATTTCATATATGAAAGTATATCAGCAT  773

seq1  TTGGAAGATTGACACAGGTCATTGAATAAGTATTTTCATTTTGTTAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGATTGACACAGGTCATTGAATAAGTATTTTCATTTTGTTAAATA  823

seq1  GCCACTAAGATGGAAAATTGTTTGGAGTCCCTGAAAGTCATTAAAACTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTAAGATGGAAAATTGTTTGGAGTCCCTGAAAGTCATTAAAACTTT  873

seq1  GGCTCTGTGAGTGGGAAAGTTCATCAGTTTCAGTTTCCCCATTGCAGTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGTGAGTGGGAAAGTTCATCAGTTTCAGTTTCCCCATTGCAGTTG  923

seq1  ACTTTAGGAAACCTCCGATTTTGGTGTCTTGTCAAAGAAAATGAAGTACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGGAAACCTCCGATTTTGGTGTCTTGTCAAAGAAAATGAAGTACT  973

seq1  CATATTTGTTGTTCAGTGTGTGCATAAAACTACATGTTCATCCTACATGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGTTGTTCAGTGTGTGCATAAAACTACATGTTCATCCTACATGT  1023

seq1  CAAACAGATGCTAATATATACATAATATATACATTATTATGTGAATTAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGATGCTAATATATACATAATATATACATTATTATGTGAATTAGT  1073

seq1  ATAAATATAAAATAAAAGTTCTTTTTGCTTAGAGATATAGTTATTAAAAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATAAAATAAAAGTTCTTTTTGCTTAGAGATATAGTTATTAAAAA  1123

seq1  TGTTTATGCTGTCAGATAATGGAATTC  1177
      |||||||||||||||||||||||||||
seq2  TGTTTATGCTGTCAGATAATGGAATTC  1150