MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-024I07
Chromosome	1 (Build37)
Map Location	3,061,310 - 3,206,792
singlet/doublet	doublet
Overlap gene	Xkr4
Upstream gene	none
Downstream gene	LOC100038975, LOC664792
Link	Open Mouse BAC browser

Click to get alignment info.

name	Xkr4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:497097 MGI:3528744
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100038975 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038975
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC664792 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:664792
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins pseudo : _no_value

name	Xkr4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:59858538 GeneID:497097 MGI:3528744
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : X Kell blood group precursor related family member 4 transcript_id : NM_001011874.1

name	LOC100038975 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149233582 GeneID:100038975
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100038975 transcript_id : XM_001472020.1

name	Xkr4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:59858539 CCDS:CCDS14803.1 GeneID:497097 MGI:3528744
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : XK-related protein 4 protein_id : NP_001011874.1

name	LOC100038975 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149233583 GeneID:100038975
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472070.1

name	(CDS detail)
type	STS
link
xref	UniSTS:128840
definition	standard_name : D1Mit475

name	(CDS detail)
type	STS
link
xref	UniSTS:125374
definition	standard_name : MHAa84a2.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:128586
definition	standard_name : D1Mit242.1

name	(CDS detail)
type	STS
link
xref	UniSTS:128585
definition	standard_name : D1Mit242

name	LOC664792 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149233581 GeneID:664792
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : similar to Solute carrier family 35, member E3 pseudo : _no_value transcript_id : XR_030515.1

clone name	MSMg01-147H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-192O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-198H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-129G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105M15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-300N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191O15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-161P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197A09
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-024I07.b	B6Ng01-024I07.g
ACC	DH856127	DH856128
length	883	1,040
definition	DH856127\|Mus musculus domesticus DNA, BAC clone: B6Ng01-024I07, 5' end.	DH856128\|Mus musculus domesticus DNA, BAC clone: B6Ng01-024I07, 3' end.
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(3,061,310 - 3,062,197)	(3,205,754 - 3,206,792)
sequence	gaattctgcaaccaagcagctttgctatgcaaactgctttcatcctacat cctgtgtatttgtttcatgaatgtcttatctttctattcctgtaataaaa tacccaagataagcagcttaaagaaggaaatctttattttgattaatgat ttcagaaacttcagtttgtggtccactagtgctgctgctttgaggcctgg taaggaaatggtatcgtgatggaagggcatgttagagaaatgctcatcta atggcagctgaaaaacagagcaagaaaggaaaatgagaagccatgtctct accttgctcctagtttctgtcacatcccctcaatgccatcagctggcaac caagtccttaaaccgctcatttttgtgggctattttagatacaagctgta gcagtgagaagggtatttactatgaatgctctatttgccaacttccatct ggagtcttggaattccttcctgcacccccatattcctgtctgttcaggaa actgtttactactgctagaatcactgcaaagcttacttatgtgaggtgtg ttttgtcttgactttatgagtcttactgcaaattttgtctttgtccttgt ctaaaatctagtatgtatgtggcttccaactggtgtttaaattcctatgg agattggttctgaccagattttgacctcggtgattgctgtgttgtgctgt ttgaaagttctttttctagcctaggggtattctgcttgaccctgttttga cactaagtcagaacatgagctgtgagtttccctgtgagctgggtctgcac tctgttgactcatcagaggtcttattaatggtgtcctaagctgattggtg actatggagagacactcacagaccctcccttcc	gaattctgtatcaccaaatgggaagagattgtgtttgacatggtggtggg catcatctacatcttcagttggttcaatgtcaaggaaggcaggacacgct gcaggctgttcatttactattttgtaatccttttggaaaatacagccttg agtgcactctggtacctctacaaagctccccagattgcagatgcatttgc catccctgcattgtgcgtggttttcagcagctttttaacaggtgttgttt ttatgctgatgtactatgccttctttcatcccaatgggcccagatttggg caatcaccaagttgtgcttgtgatgatccagccactgccttctctctgcc tccagaagtagccacaagcacactacggtccatctccaacaaccgcagtg ttgccagtgaccgtgatcagaaatttgcagagcgggatggatgtgtacct gtgtttcaagtgagaccaactgcaccacccaccccatcatctcgaccacc acggattgaagaatcagtcattaaaattgacctgttcaggaatagatatc cagcatgggagagacatgtgttagatcgaagcctgagaaaggccatttta gcctttgaatgttccccatctcctccaaggctgcagtacaaggatgatgc ccttattcaggagaggctggaatatgaaaccactttataaaatacaagga gccgcaatgtccacatgaaggggtaacagcagggctgtggcaataatgac accttatccaagagtagggcagcgagctgtatgttcttagttgtggtatg gtttgatcttccatcagctgactgcctgctgctggtgtctattcaagcca gcagtgctgagagtctcttacactgtcagcttaatatgactgttgctaca aactcctccagcagagatttggggcacattcactggagggtaaaattaat ggtgaaaaatgtggcctctaatcataagggtattttgatgggttttacta agttttgcataatatattcacacaccacctataccacccc
quality values	Open. Hide. 47 31 43 36 47 47 30 31 39 38 45 47 32 27 47 37 52 43 35 55 61 61 61 61 61 24 15 26 15 33 9 10 11 19 19 20 29 41 59 59 59 43 59 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 55 59 61 59 59 61 61 52 34 28 25 21 26 26 26 41 45 52 59 61 61 61 61 61 61 61 61 61 61 59 52 49 52 59 52 61 61 61 61 61 61 59 59 59 59 52 61 59 59 59 45 59 59 50 59 61 61 59 52 59 49 59 52 38 59 59 52 59 61 59 59 59 59 59 61 61 61 61 61 61 61 61 59 59 55 59 61 61 61 61 61 59 43 61 59 59 55 59 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 59 59 61 59 61 59 61 59 61 61 61 61 61 59 59 61 59 59 59 59 59 49 61 61 61 59 61 61 61 61 61 61 61 61 59 61 61 59 59 61 61 61 59 61 52 59 52 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 52 59 59 61 61 59 61 59 61 59 59 52 61 59 59 59 59 59 61 61 61 61 61 61 61 61 61 59 61 61 59 61 61 59 59 59 59 61 61 59 59 61 61 61 59 61 61 59 59 61 59 59 59 52 45 49 31 49 43 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 52 52 59 59 52 59 59 59 59 44 35 52 59 59 61 59 59 59 59 59 59 59 59 61 61 61 59 61 59 59 59 59 61 61 61 61 61 61 61 61 61 61 61 59 59 59 59 59 59 59 59 59 61 59 59 59 45 61 59 59 59 49 59 52 61 61 61 61 61 59 43 39 23 33 44 61 59 59 59 44 55 59 49 61 61 59 59 59 59 59 59 59 59 61 59 59 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 59 59 59 59 59 59 61 61 61 59 55 61 61 61 61 61 59 61 61 61 61 61 61 61 61 59 61 59 59 59 52 59 59 59 59 59 52 61 59 61 61 61 61 59 61 59 61 61 61 61 49 52 41 36 59 59 59 59 59 59 59 59 59 59 61 61 59 59 59 59 59 52 59 59 45 61 59 59 52 43 52 52 59 52 59 59 61 61 61 61 61 61 61 59 59 59 47 55 49 55 61 55 47 61 61 18 34 23 15 18 13 35 19 55 55 55 61 61 55 55 55 52 52 55 17 37 9 16 17 16 49 52 49 43 52 49 49 55 55 61 37 36 32 37 34 37 61 61 61 61 61 61 61 61 37 31 15 25 21 22 50 61 61 61 26 17 11 10 9 22 37 55 37 29 39 50 47 40 61 55 61 55 55 55 29 37 23 23 49 37 21 47 49 43 61 61 47 53 61 52 47 29 53 61 50 47 47 53 35 53 43 47 61 33 24 61 52 45 50 61 35 43 50 9 26 31 43 61 33 43 61 61 47 52 61 50 53 50 61 37 19 61 40 42 40 43 45 50 43 19 42 38 50 50 53 47 18 35 30 20 20 53 17 18 13 20 31 31 32 52 38 38 50 43 30 30 47 42 50 53 27 45 43 39 32 36 34 17 36 52 47 30 22 12 29 43 38 42 31 43 40 16 53 53 18 13 17 10 8 11 18 24 36 17 45 35 45 24 53 53 30 30 45 30 45 16 28 39 38 27 53 53 27 53 21 29 17 20 10 17 30 42 30 47 7 30 28 33 46 43 17 19 17 11 14 21 27 48 42 48 26 11 16 16 32 26 24 21 13 10 28 21 14 45 16 20 36 26 34 27 17 17 12 22 10 21 30 13 5 21 8 45 42 24 19 23 7 12 6 12 13 5 8 11 19 28 29 17 14 12 19 17 14 9 35 12 23 23 25 9 13 19 38 21 19 36 18 17 52 40 37 14 23 31 27 18 11 12 8 9	Open. Hide. 55 55 52 40 61 33 26 28 23 19 21 14 20 21 32 28 52 59 61 61 59 59 55 55 44 59 59 59 38 61 59 59 59 61 61 61 61 61 61 59 61 61 61 59 61 61 61 61 59 55 59 44 59 52 35 50 52 59 59 61 59 61 59 59 59 59 59 59 59 61 61 61 59 61 59 59 59 61 61 61 59 52 59 59 61 61 59 59 55 43 59 59 61 59 61 59 61 59 59 59 59 59 59 52 61 59 61 61 59 59 59 52 59 59 61 59 61 61 61 61 61 61 61 59 59 59 59 59 59 59 61 61 61 61 61 59 61 61 59 61 61 61 61 61 59 59 61 59 59 59 44 55 59 61 59 59 59 59 59 59 61 59 59 59 61 61 59 61 61 59 61 59 61 61 59 61 61 61 61 61 61 59 52 61 61 61 61 52 52 35 61 59 59 59 52 61 59 61 61 61 61 59 61 61 61 61 61 61 59 59 61 61 61 59 61 61 61 61 61 61 59 61 61 59 59 59 52 61 61 59 61 61 61 61 61 61 59 61 61 59 59 61 59 61 59 59 61 59 59 61 61 59 59 59 59 59 59 59 59 59 59 59 59 59 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 61 61 61 61 59 61 52 45 41 59 59 52 61 61 59 59 59 52 59 59 59 52 59 59 59 59 59 59 59 59 59 59 59 59 61 61 59 59 61 59 59 61 61 59 59 61 52 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 59 52 61 61 52 59 61 49 59 59 59 59 59 59 59 61 61 61 59 61 61 61 61 59 61 52 59 59 59 59 55 61 55 55 52 55 55 52 55 55 55 52 55 55 52 55 61 55 55 61 55 61 55 55 55 61 61 61 61 52 52 55 49 55 55 55 52 55 55 61 61 61 55 55 55 52 52 61 55 55 61 61 61 61 55 55 55 61 55 55 61 61 61 61 61 61 61 61 61 61 61 55 55 55 47 50 55 55 55 55 50 61 55 55 41 55 55 55 61 50 50 55 55 55 55 61 61 55 61 50 50 47 39 55 50 49 50 50 55 55 37 55 55 55 55 61 55 55 61 55 61 47 37 61 61 61 61 50 61 61 47 53 61 30 50 53 52 47 47 61 53 61 61 52 61 61 61 47 61 61 61 61 61 61 53 50 61 61 52 50 53 43 61 50 52 61 61 61 52 50 53 53 61 61 61 61 61 33 61 50 61 50 52 61 61 61 61 61 39 47 33 61 52 43 43 61 61 32 53 61 61 61 61 39 53 53 53 42 61 18 53 50 61 61 61 39 47 50 53 52 40 53 42 35 17 22 38 50 34 50 61 61 61 47 43 53 61 50 61 50 52 53 38 45 42 42 42 34 53 50 52 39 22 38 50 53 52 47 31 57 36 35 45 46 19 43 45 57 57 47 53 50 53 53 40 34 27 57 53 34 53 30 47 21 50 53 47 53 46 42 38 45 53 53 47 47 34 53 30 50 53 57 47 32 36 14 47 42 47 30 34 45 33 45 39 52 52 34 36 45 31 38 27 32 45 53 30 53 38 42 40 30 53 52 50 53 14 57 57 47 29 38 42 38 45 45 53 50 47 57 45 45 50 50 40 53 50 25 24 52 33 18 41 42 46 34 38 30 53 46 41 50 30 38 41 35 23 37 24 53 18 38 32 10 57 37 31 44 30 47 32 32 33 40 42 42 25 32 33 47 24 35 52 33 24 36 31 39 21 37 14 39 38 19 36 31 33 53 14 42 25 38 26 22 52 31 28 40 29 18 36 31 31 29 37 29 31 40 21 36 29 15 40 16 28 25 33 33 29 23 22 53 25 32 12 47 24 34 32 26 35 33 30 24 24 44 27 29 32 17 10 20 23 18 30 27 36 10 46 23 25 34 29 31 22 38 31 31 20 30 30 47 14 30 25 28 29 25 33 33 28 30 37 29 28 35 23 19 38 21 29 37 28 20 25 26 9 51 29 28 25 28 33 21 29 29 24 22 34 28 9 43 7 27 12 37 26 33 46 51 10 7 18 17 12 29 28 29 13 23 28 20 20 5 5 6 6 6 5 12 6 4 10 8 14 5 6 12 10 7 8 8 39 51 28 7 4 12 12 16 8 20 18 11 10 5 11 41 14 29 13 31 13 19 23 30 33 13 20 27 36 29 29 12 9 10 23 27 29 17 29 41 12 10 29 18 20 29 14 23 32 17 28 19 7 5 5 19 15 5 7 5 7 6 32 12 10 7 8 7 7 10 16 7 5 32 8 10 8 6 19 19 6 6 38 34 31

Alignment Information

BAC End 1

BAC End 2

seq1: chr1_3061310_3062197
seq2: B6Ng01-024I07.b_39_922

seq1  GGAATTCTGCAACCAAGCAGCTTTGCTATGCAAACTGCTTTCATCCTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTGCAACCAAGCAGCTTTGCTATGCAAACTGCTTTCATCCTACA  50

seq1  TCCTGTGTATTTGTTTCATGAATGTCTTATCTTTCTATTCCTGTAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTATTTGTTTCATGAATGTCTTATCTTTCTATTCCTGTAATAAA  100

seq1  ATACCCAAGATAAGCAGCTTAAAGAAGGAAATCTTTATTTTGATTAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAAGATAAGCAGCTTAAAGAAGGAAATCTTTATTTTGATTAATGA  150

seq1  TTTCAGAAACTTCAGTTTGTGGTCCACTAGTGCTGCTGCTTTGAGGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAACTTCAGTTTGTGGTCCACTAGTGCTGCTGCTTTGAGGCCTG  200

seq1  GTAAGGAAATGGTATCGTGATGGAAGGGCATGTTAGAGAAATGCTCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAAATGGTATCGTGATGGAAGGGCATGTTAGAGAAATGCTCATCT  250

seq1  AATGGCAGCTGAAAAACAGAGCAAGAAAGGAAAATGAGAAGCCATGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAGCTGAAAAACAGAGCAAGAAAGGAAAATGAGAAGCCATGTCTC  300

seq1  TACCTTGCTCCTAGTTTCTGTCACATCCCCTCAATGCCATCAGCTGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGCTCCTAGTTTCTGTCACATCCCCTCAATGCCATCAGCTGGCAA  350

seq1  CCAAGTCCTTAAACCGCTCATTTTTGTGGGCTATTTTAGATACAAGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCCTTAAACCGCTCATTTTTGTGGGCTATTTTAGATACAAGCTGT  400

seq1  AGCAGTGAGAAGGGTATTTACTATGAATGCTCTATTTGCCAACTTCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGAGAAGGGTATTTACTATGAATGCTCTATTTGCCAACTTCCATC  450

seq1  TGGAGTCTTGGAATTCCTTCCTGCACCCCCATATTCCTGTCTGTTCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCTTGGAATTCCTTCCTGCACCCCCATATTCCTGTCTGTTCAGGA  500

seq1  AACTGTTTACTACTGCTAGAATCACTGCAAAGCTTACTTATGTGAGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTTACTACTGCTAGAATCACTGCAAAGCTTACTTATGTGAGGTGT  550

seq1  GTTTTGTCTTGACTTTATGAGTCTTACTGCAAATTTTGTCTTTGTCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTCTTGACTTTATGAGTCTTACTGCAAATTTTGTCTTTGTCCTTG  600

seq1  TCTAAAATCTAGTATGTATGTGGCTTCCAACTGGTGTTTAAATTCCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATCTAGTATGTATGTGGCTTCCAACTGGTGTTTAAATTCCTATG  650

seq1  GAGATTGGTTCTGACCAGATTTTGACCTCGGTGATTGCTGTGTTGTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGGTTCTGACCAGATTTTGACCTCGGTGATTGCTGTGTTGTGCTG  700

seq1  TTTGAAGGTTCTTTTTCTAGCCTAGGGGTATTCTGC-TGACCCTGTTTTG  749
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTGAAAGTTCTTTTTCTAGCCTAGGGGTATTCTGCTTGACCCTGTTTTG  750

seq1  ACACTAAGTCAGAACATGAGCTGTGAGTTT-CCTGTGAGCTGGGTCTTGC  798
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  ACACTAAGTCAGAACATGAGCTGTGAGTTTCCCTGTGAGCTGGGTC-TGC  799

seq1  ACTCTGTTGACTCAGCAGAGGTCTTTATTAATGGTGTCCTAAAGCTGATT  848
      |||||||||||||| |||||||| |||||||||||||||| ||||||| |
seq2  ACTCTGTTGACTCATCAGAGGTC-TTATTAATGGTGTCCT-AAGCTGA-T  846

seq1  TGGTGACTATGGAGAGGACACTCACAGACCCTCCCCTTCC  888
      ||||||||||||||| |||||||||||||||| |||||||
seq2  TGGTGACTATGGAGA-GACACTCACAGACCCT-CCCTTCC  884

seq1: chr1_3205754_3206792
seq2: B6Ng01-024I07.g_70_1109 (reverse)

seq1  GGGGTGGTAT-GGTGGTGTGTGAATATATTTATGCAAAACTTAGTAAAAC  49
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  GGGGTGGTATAGGTGGTGTGTGAATATA-TTATGCAAAACTTAGTAAAAC  49

seq1  CCATCAAAATACCCTAATGATTAGAGGCAACATTTTTCA-CAATAATGTT  98
      ||||||||||||||| |||||||||||| |||||||||| || |||| ||
seq2  CCATCAAAATACCCTTATGATTAGAGGCCACATTTTTCACCATTAATTTT  99

seq1  ATCCTCCAGTGAATGTGCCCCAAATCTCTGCTGGAGGAGTTTGTAGCAAC  148
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCAGTGAATGTGCCCCAAATCTCTGCTGGAGGAGTTTGTAGCAAC  149

seq1  AGTCATATTAAGCTGACAGTGTAAGAGACTCTCAGCACTGCTGGCTTGAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATATTAAGCTGACAGTGTAAGAGACTCTCAGCACTGCTGGCTTGAA  199

seq1  TAGACACCAGCAGCAGGCAGTCAGCTGATGGAAGATCAAACCATACCACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACCAGCAGCAGGCAGTCAGCTGATGGAAGATCAAACCATACCACA  249

seq1  ACTAAGAACATACAGCTCGCTGCCCTACTCTTGGATAAGGTGTCATTATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAACATACAGCTCGCTGCCCTACTCTTGGATAAGGTGTCATTATT  299

seq1  GCCACAGCCCTGCTGTTACCCCTTCATGTGGACATTGCGGCTCCTTGTAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGCCCTGCTGTTACCCCTTCATGTGGACATTGCGGCTCCTTGTAT  349

seq1  TTTATAAAGTGGTTTCATATTCCAGCCTCTCCTGAATAAGGGCATCATCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAGTGGTTTCATATTCCAGCCTCTCCTGAATAAGGGCATCATCC  399

seq1  TTGTACTGCAGCCTTGGAGGAGATGGGGAACATTCAAAGGCTAAAATGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTGCAGCCTTGGAGGAGATGGGGAACATTCAAAGGCTAAAATGGC  449

seq1  CTTTCTCAGGCTTCGATCTAACACATGTCTCTCCCATGCTGGATATCTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCAGGCTTCGATCTAACACATGTCTCTCCCATGCTGGATATCTAT  499

seq1  TCCTGAACAGGTCAATTTTAATGACTGATTCTTCAATCCGTGGTGGTCGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAACAGGTCAATTTTAATGACTGATTCTTCAATCCGTGGTGGTCGA  549

seq1  GATGATGGGGTGGGTGGTGCAGTTGGTCTCACTTGAAACACAGGTACACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGGGGTGGGTGGTGCAGTTGGTCTCACTTGAAACACAGGTACACA  599

seq1  TCCATCCCGCTCTGCAAATTTCTGATCACGGTCACTGGCAACACTGCGGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCGCTCTGCAAATTTCTGATCACGGTCACTGGCAACACTGCGGT  649

seq1  TGTTGGAGATGGACCGTAGTGTGCTTGTGGCTACTTCTGGAGGCAGAGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAGATGGACCGTAGTGTGCTTGTGGCTACTTCTGGAGGCAGAGAG  699

seq1  AAGGCAGTGGCTGGATCATCACAAGCACAACTTGGTGATTGCCCAAATCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGTGGCTGGATCATCACAAGCACAACTTGGTGATTGCCCAAATCT  749

seq1  GGGCCCATTGGGATGAAAGAAGGCATAGTACATCAGCATAAAAACAACAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCATTGGGATGAAAGAAGGCATAGTACATCAGCATAAAAACAACAC  799

seq1  CTGTTAAAAAGCTGCTGAAAACCACGCACAATGCAGGGATGGCAAATGCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAAAAGCTGCTGAAAACCACGCACAATGCAGGGATGGCAAATGCA  849

seq1  TCTGCAATCTGGGGAGCTTTGTAGAGGTACCAGAGTGCACTCAAGGCTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAATCTGGGGAGCTTTGTAGAGGTACCAGAGTGCACTCAAGGCTGT  899

seq1  ATTTTCCAAAAGGATTACAAAATAGTAAATGAACAGCCTGCAGCGTGTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCAAAAGGATTACAAAATAGTAAATGAACAGCCTGCAGCGTGTCC  949

seq1  TGCCTTCCTTGACATTGAACCAACTGAAGATGTAGATGATGCCCACCACC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCCTTGACATTGAACCAACTGAAGATGTAGATGATGCCCACCACC  999

seq1  ATGTCAAACACAATCTCTTCCCATTTGGTGATACAGAATTC  1039
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAACACAATCTCTTCCCATTTGGTGATACAGAATTC  1040

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BAC

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Alignment Information