BAC Information

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BAC

Clone NameB6Ng01-026C15
Chromosome1 (Build37)
Map Location 135,114,290 - 135,115,255
singlet/doubletsinglet
Overlap genenone
Upstream geneLemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
Downstream genePlekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026C15.bB6Ng01-026C15.g
ACCDH857285DH857286
length740959
definitionDH857285|Mus musculus domesticus DNA, BAC clone: B6Ng01-026C15, 5' end.DH857286|Mus musculus domesticus DNA, BAC clone: B6Ng01-026C15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatatagggttgggttgttcagcagcacggggcctgggatgaaa
caccacgatcaaacaccttggggaggaaagggtctatttgacttatactt
ccacaccacagttcatcatcaaaggaagtcaagacaggaactcaagcagt
aggacaggaacctgtaggcaggagctaatgtagaggccgtggaggggtgc
tgcttactggcttgctccttgtggcttgttcagcctgctttcttacagaa
cctggtccgtcaccacgcacaattggcttatcaatcattaattagggaaa
tggtctctaggcttgactgcagctccatcttctggaggcattttcatacc
tgaggtgccctcctctcagatgactttagtttgtgtcgcgttgacattaa
actagtgaatatactcacctgccatagccctaaggcttttcccccagagt
ggtacgaaaaaaatttatgtgaatctggttgacagtagacagaagctacc
aaccttacacacagaaacatttgtgtgtggaggcggtgtctattttgtca
cattcttcctctaatctatttctcactgtctctctgtccatctctgtctc
tttgtctgaatgtccatctgtgtgttttttgtctctctctctctctctct
ctctctctctctctctctctctgtgagtgtgtgtgagtgtgtgtgtgtgt
gtgtgcgctaaatttttatttttttttgtcattcctatgt
gaattccagccattagatcattacattgctcagttttaaggtaaatgaaa
cacaggaaacctcccctctcacagacaaaggcaaccttgtcttaagccct
cttttctgtcttctccaaaagaaattggtagcaaagtaaaacagctgcag
cacagaggttgaaaccacatccgagaggccaagtttaaatcctggccctg
ctgggcaataacataacctctgtgtgcttctgtttcatcccttgtaaaac
caggataagaggtgtcggtgtgtggattagaggagtgaatttggaaagca
cttagcactatgttcaaccttcttgaaggcactgcttattagtcacttca
gtcacttgctctaaagccagtggacaaggccctgtgacagcctgagcctt
ggagatctgactctatgtgtagcattactctcgtcacacaatggcttttt
attttctgtccccttgaagcagtatatacctggtaagcagggctgtgcgg
gcatacctgtgtacacatccagactgtcctgagtggagaagtgtccaaag
cttccatacagagcttggtcaagcctcttggtcaaacactctatggctta
catcattaaccccatgtgtgcttaagaagtcacagatagcactccccctt
cactaagcacaggatacactcagattttctgccatttcttccaataaact
gaaaaataagggcctggagagacgactcaacagtggagagcactggatcc
ttcctgaggatccatgttctagtcccagcactcacgagggagctcgtaac
aatctgtgacaggcatacatgcaggcaaaacacacctgcatacaaactta
aaagttagaaaggggccaggtatggcaatgcatgccttaattccgtactc
aggagcaaaggcaatggtttctgtgagttaagaggccagctgattacatc
gcaaacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135114290_135115255
seq2: B6Ng01-026C15.g_67_1025

seq1  GAATTCCAGCCATTAGATCATTACATTGCTCAGTTTTAAGGTAAATGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCATTAGATCATTACATTGCTCAGTTTTAAGGTAAATGAAA  50

seq1  CACAGGAAACCTCCCCTCTCACAGACAAAGGCAACCTTGTCTTAAGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAAACCTCCCCTCTCACAGACAAAGGCAACCTTGTCTTAAGCCCT  100

seq1  CTTTTCTGTCTTCTCCAAAAGAAATTGGTAGCAAAGTAAAACAGCTGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGTCTTCTCCAAAAGAAATTGGTAGCAAAGTAAAACAGCTGCAG  150

seq1  CACAGAGGTTGAAACCACATCCGAGAGGCCAAGTTTAAATCCTGGCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGTTGAAACCACATCCGAGAGGCCAAGTTTAAATCCTGGCCCTG  200

seq1  CTGGGCAATAACATAACCTCTGTGTGCTTCTGTTTCATCCCTTGTAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAATAACATAACCTCTGTGTGCTTCTGTTTCATCCCTTGTAAAAC  250

seq1  CAGGATAAGAGGTGTCGGTGTGTGGATTAGAGGAGTGAATTTGGAAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAAGAGGTGTCGGTGTGTGGATTAGAGGAGTGAATTTGGAAAGCA  300

seq1  CTTAGCACTATGTTCAACCTTCTTGAAGGCACTGCTTATTAGTCACTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCACTATGTTCAACCTTCTTGAAGGCACTGCTTATTAGTCACTTCA  350

seq1  GTCACTTGCTCTAAAGCCAGTGGACAAGGCCCTGTGACAGCCTGAGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTGCTCTAAAGCCAGTGGACAAGGCCCTGTGACAGCCTGAGCCTT  400

seq1  GGAGATCTGACTCTATGTGTAGCATTACTCTCGTCACACAATGGCTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCTGACTCTATGTGTAGCATTACTCTCGTCACACAATGGCTTTTT  450

seq1  ATTTTCTGTCCCCTTGAAGCAGTATATACCTGGTAAGCAGGGCTGTGCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGTCCCCTTGAAGCAGTATATACCTGGTAAGCAGGGCTGTGCGG  500

seq1  GCATACCTGTGTACACATCCAGACTGTCCTGAGTGGAGAAGTGTCCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCTGTGTACACATCCAGACTGTCCTGAGTGGAGAAGTGTCCAAAG  550

seq1  CTTCCATACAGAGCTTGGTCAAGCCTCTTGGTCAAACACTCTATGGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATACAGAGCTTGGTCAAGCCTCTTGGTCAAACACTCTATGGCTTA  600

seq1  CATCATTAACCCCATGTGTGCTTAAGAAGTCACAGATAGCACTCCCCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTAACCCCATGTGTGCTTAAGAAGTCACAGATAGCACTCCCCCTT  650

seq1  CACTAAGCACAGGATACACTCAGATTTTCTGCCATTTCTTCCAATAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGCACAGGATACACTCAGATTTTCTGCCATTTCTTCCAATAAACT  700

seq1  GAAAAATAAGGGCCTGGAGAGACGACTCAACAGTGGAGAGCACTGGATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAAGGGCCTGGAGAGACGACTCAACAGTGGAGAGCACTGGATCC  750

seq1  TTCCTGAGGATCCATGTTCTAGTCCCAGCACTCACGAGGGAGCTCGTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGGATCCATGTTCTAGTCCCAGCACTCACGAGGGAGCTCGTAAC  800

seq1  AATCTGTGACAGGCATACATGCAGGCAAAACACACCTGCATACAAACTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTGACAGGCATACATGCAGGCAAAACACACCTGCATACAAACTTA  850

seq1  AAAGTTAGAAAGGGGCCAGGTATGGCAATGCATGCCTTTAATTCCGGTAC  900
      |||||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  AAAGTTAGAAAGGGGCCAGGTATGGCAATGCATGCC-TTAATTCC-GTAC  898

seq1  TCAGGAGGCAGAGGCAGATGGGTTTCTGTGAGTTAAGAGGCCAGCCTGAT  950
      |||||| ||| ||||| || |||||||||||||||||||||||| |||||
seq2  TCAGGA-GCAAAGGCA-AT-GGTTTCTGTGAGTTAAGAGGCCAG-CTGAT  944

seq1  CTACATCGCAAACTCC  966
       ||||||||||||| |
seq2  -TACATCGCAAACTTC  959