BAC Information

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BAC

Clone NameB6Ng01-026N12
Chromosome1 (Build37)
Map Location 134,109,481 - 134,240,163
singlet/doubletdoublet
Overlap geneLemd1, EG638532, Klhdc8a, Nuak2
Upstream geneRassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221
Downstream geneTmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026N12.bB6Ng01-026N12.g
ACCDH857758DH857759
length8391,012
definitionDH857758|Mus musculus domesticus DNA, BAC clone: B6Ng01-026N12, 5' end.DH857759|Mus musculus domesticus DNA, BAC clone: B6Ng01-026N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,239,325 - 134,240,163)(134,109,481 - 134,110,505)
sequence
gaattcatttaactcctaatacacctgccctcccaccccccgtcccccaa
tcaccattcccagtgttggctcctaggaatcgcccaagaggcctggtgtg
gtacagaacacctgtaaaccctgttcaggagggtccagagttccaggcca
gactggccagcacccaacagcttctcccagcttgtggtaggtatgggagg
agctaaaatagagaagctaggctgggcatggtagcacatgtctttaatgc
caacacttgggaggtagagacaggtggatctctgtgagtttgaggccaga
ctgatctacagagtgagtcccagcacagacaaggctacaaaaacaaccca
acaataagaaagctattaagttattcttattttaagtcattctccaagcc
agctaatttgttttatttatttatttatttatttatttatttatttattt
atttatttatttatttttgagacacagtttctctgtatagccttggttgt
cctggaactcaatctgtagaccaggttggtcttggattcatagagatctg
cttgcctctgcctcccaaggactgggattgaaggtgagctccaccacacc
cagtttagccagttaatttttactttactccacagagcaagcaagcagtg
tgggggacagaggcagcagctggagaggtacattggggtcaggtggtgac
cttttgactcctgtgcaggctggcctaggctgttggtacagcactctggt
ggcagaggtgtggggatggtggcaaattcaagtccagcccaggttgtggc
tgtttccagttgtttgagggttacctatccaaagatctg
gaattctatgtgggttggtcagcactggggtgggcctaacccttgggtca
gaaagcagcagaaaaaatgacttgctccccaatgtcaggcctgtagagaa
ttcatttttctctggaaagagaggggcccgtagatttgacactctcagga
tgcttctgtccctctcgctccctgctcaggggcaatgggatttgagacag
acgctggctggccctgctgccatcaatatgtgtcccagccctgtccaatg
tctgctctataatgagtagtgtttcggaatgtcacctccattaatgggga
agcgacacctgtgcacagccagaaccacctctctgtcttcattaggcagt
ccacagcctagctgcaggctgctctggctctgtgacagatgacaggcaga
ggagcgagagcagcaggctcctgctgtccaggattcattcgcagacaatg
accccgaatgccccctccccccaacaaacaccaaaatagacagctgagaa
aaatgtccttctggagcaaggcacagcaaggacagttaatagctagaaag
caggcttaaggaacagaggagcaagttcctgggacaagcgccttttcttg
tctctgatcgcctatttagggtgggttatggggtctctgcctctttagca
ttccaactgtcttcacaggccgcgttttttgttttttttgttttttcctc
ttctcataaatctgtttgtttgctatgcaagtcacagaatgagattagaa
ctgatgttctgactctagatttctgtccatcccgggcctgcacgtagtct
cccagtaacccctgttccctttaatactttacctcttgccctcctaacaa
aatggggcagcacatgagcagagccatagaatggctggagatatcgacat
ggcttccaggacccctatcctgtaaaatctgtctttaaaaaaggccagat
agccaggcagtgggggcgccacctttaatccagcacttgggagcgagcag
gtggatctctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_134239325_134240163
seq2: B6Ng01-026N12.b_48_886 (reverse)

seq1  CAGATCTTTGGATAGGTAAACACTCTAACAACTGGATAACAGCCACAGCC  50
      ||||||||||||||||| ||| ||| |||||||||| |||||||||| ||
seq2  CAGATCTTTGGATAGGT-AACCCTCAAACAACTGGA-AACAGCCACAACC  48

seq1  TGGGCTGGACTTGAATTTGCCACCATCCCCACACCTCTGCCACCAGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGGACTTGAATTTGCCACCATCCCCACACCTCTGCCACCAGAGTG  98

seq1  CTGTACCAACAGCCTAGGCCAGCCTGCACAGGAGTC-AAAGGTCACCACC  149
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGTACCAACAGCCTAGGCCAGCCTGCACAGGAGTCAAAAGGTCACCACC  148

seq1  TGACCCCAATGTACCTCTCCAGCTGCTGCCTCTGTCCCCCACACTGCTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCAATGTACCTCTCCAGCTGCTGCCTCTGTCCCCCACACTGCTTG  198

seq1  CTTGCTCTGTGGAGTAAAGT-AAAATTAACTGGCTAAACTGGGTGTGGTG  248
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTGCTCTGTGGAGTAAAGTAAAAATTAACTGGCTAAACTGGGTGTGGTG  248

seq1  GAGCTCACCTTCAATCCCAGTCCTTGGGAGGCAGAGGCAAGCAGATCTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCACCTTCAATCCCAGTCCTTGGGAGGCAGAGGCAAGCAGATCTCT  298

seq1  ATGAATCCAAGACCAACCTGGTCTACAGATTGAGTTCCAGGACAACCAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCCAAGACCAACCTGGTCTACAGATTGAGTTCCAGGACAACCAAG  348

seq1  GCTATACAGAGAAACTGTGTCTCAAAAATAAATAAATAAATAAATAAATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACAGAGAAACTGTGTCTCAAAAATAAATAAATAAATAAATAAATA  398

seq1  AATAAATAAATAAATAAATAAATAAATAAAACAAATTAGCTGGCTTGGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATAAATAAATAAATAAAACAAATTAGCTGGCTTGGAG  448

seq1  AATGACTTAAAATAAGAATAACTTAATAGCTTTCTTATTGTTGGGTTGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTAAAATAAGAATAACTTAATAGCTTTCTTATTGTTGGGTTGTT  498

seq1  TTTGTAGCCTTGTCTGTGCTGGGACTCACTCTGTAGATCAGTCTGGCCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGCCTTGTCTGTGCTGGGACTCACTCTGTAGATCAGTCTGGCCTC  548

seq1  AAACTCACAGAGATCCACCTGTCTCTACCTCCCAAGTGTTGGCATTAAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACAGAGATCCACCTGTCTCTACCTCCCAAGTGTTGGCATTAAAG  598

seq1  ACATGTGCTACCATGCCCAGCCTAGCTTCTCTATTTTAGCTCCTCCCATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGCTACCATGCCCAGCCTAGCTTCTCTATTTTAGCTCCTCCCATA  648

seq1  CCTACCACAAGCTGGGAGAAGCTGTTGGGTGCTGGCCAGTCTGGCCTGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCACAAGCTGGGAGAAGCTGTTGGGTGCTGGCCAGTCTGGCCTGGA  698

seq1  ACTCTGGACCCTCCTGAACAGGGTTTACAGGTGTTCTGTACCACACCAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGACCCTCCTGAACAGGGTTTACAGGTGTTCTGTACCACACCAGG  748

seq1  CCTCTTGGGCGATTCCTAGGAGCCAACACTGGGAATGGTGATTGGGGGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGGGCGATTCCTAGGAGCCAACACTGGGAATGGTGATTGGGGGAC  798

seq1  GGGGGGTGGGAGGGCAGGTGTATTAGGAGTTAAATGAATTC  839
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTGGGAGGGCAGGTGTATTAGGAGTTAAATGAATTC  839

seq1: chr1_134109481_134110505
seq2: B6Ng01-026N12.g_68_1079

seq1  GAATTCTATGTGGGTTGGTCAGCACTGGGGTGGGCCTAACCCTTGGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTGGGTTGGTCAGCACTGGGGTGGGCCTAACCCTTGGGTCA  50

seq1  GAAAGCAGCAGAAAAAATGACTTGCTCCCCAATGTCAGGCCTGTAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGCAGAAAAAATGACTTGCTCCCCAATGTCAGGCCTGTAGAGAA  100

seq1  TTCATTTTTCTCTGGAAAGAGAGGGGCCCGTAGATTTGACACTCTCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTCTCTGGAAAGAGAGGGGCCCGTAGATTTGACACTCTCAGGA  150

seq1  TGCTTCTGTCCCTCTCGCTCCCTGCTCAGGGGCAATGGGATTTGAGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGTCCCTCTCGCTCCCTGCTCAGGGGCAATGGGATTTGAGACAG  200

seq1  ACGCTGGCTGGCCCTGCTGCCATCAATATGTGTCCCAGCCCTGTCCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGGCTGGCCCTGCTGCCATCAATATGTGTCCCAGCCCTGTCCAATG  250

seq1  TCTGCTCTATAATGAGTAGTGTTTCGGAATGTCACCTCCATTAATGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTATAATGAGTAGTGTTTCGGAATGTCACCTCCATTAATGGGGA  300

seq1  AGCGACACCTGTGCACAGCCAGAACCACCTCTCTGTCTTCATTAGGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGACACCTGTGCACAGCCAGAACCACCTCTCTGTCTTCATTAGGCAGT  350

seq1  CCACAGCCTAGCTGCAGGCTGCTCTGGCTCTGTGACAGATGACAGGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCCTAGCTGCAGGCTGCTCTGGCTCTGTGACAGATGACAGGCAGA  400

seq1  GGAGCGAGAGCAGCAGGCTCCTGCTGTCCAGGATTCATTCGCAGACAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGAGAGCAGCAGGCTCCTGCTGTCCAGGATTCATTCGCAGACAATG  450

seq1  ACCCCGAATGCCCCCTCCCCCCAACAAACACCAAAATAGACAGCTGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGAATGCCCCCTCCCCCCAACAAACACCAAAATAGACAGCTGAGAA  500

seq1  AAATGTCCTTCTGGAGCAAGGCACAGCAAGGACAGTTAATAGCTAGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCTTCTGGAGCAAGGCACAGCAAGGACAGTTAATAGCTAGAAAG  550

seq1  CAGGCTTAAGGAACAGAGGAGCAAGTTCCTGGGACAAGCGCCTTTTCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTAAGGAACAGAGGAGCAAGTTCCTGGGACAAGCGCCTTTTCTTG  600

seq1  TCTCTGATCGCCTATTTAGGGTGGGTTATGGGGTCTCTGCCTCTTTAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATCGCCTATTTAGGGTGGGTTATGGGGTCTCTGCCTCTTTAGCA  650

seq1  TTCCAACTGTCTTCACAGGCCGCGTTTTTTGTTTTTTTTGTTTTTTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACTGTCTTCACAGGCCGCGTTTTTTGTTTTTTTTGTTTTTTCCTC  700

seq1  TTCTCATAAATCTGTTTGTTTGCTATGCAAGTCACAGAATGAGATTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATAAATCTGTTTGTTTGCTATGCAAGTCACAGAATGAGATTAGAA  750

seq1  CTGATGTTCTGACTCTAGATTTCTGTCCATCCCGGGCCTGCACGTAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTCTGACTCTAGATTTCTGTCCATCCCGGGCCTGCACGTAGTCT  800

seq1  CCCAGTAAACCCCTGTTCCCTTTAATACTTTACCTTCTTGCCCTCCTAAC  850
      |||||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  CCCAGT-AACCCCTGTTCCCTTTAATACTTTACC-TCTTGCCCTCCTAAC  848

seq1  ATAATGGGGCAGCCACATGAGCAGAGCCATAGAATGGCTGGAGATATCGA  900
      | |||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGGCAG-CACATGAGCAGAGCCATAGAATGGCTGGAGATATCGA  897

seq1  CATGGCTTCACAGGACCCCTATTCCTGTAAAATCTGTCCTTTAAAAAAAG  950
      ||||||||| ||||||||||| ||||||||||||||||  || |||||||
seq2  CATGGCTTC-CAGGACCCCTA-TCCTGTAAAATCTGTC--TTTAAAAAAG  943

seq1  GCCAGAATAGCCAGGCAGTGGGGGCGCACACCTTTAATCCCAGCACTTGG  1000
      ||||| ||||||||||||||||||||| |||||||||| |||||||||||
seq2  GCCAG-ATAGCCAGGCAGTGGGGGCGC-CACCTTTAAT-CCAGCACTTGG  990

seq1  GAGGCAGAGGCAGGTGGATCTCTGA  1025
      |||  |   ||||||||||||||||
seq2  GAGCGA---GCAGGTGGATCTCTGA  1012