BAC Information

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BAC

Clone NameB6Ng01-027A03
Chromosome1 (Build37)
Map Location 82,904,327 - 83,035,282
singlet/doubletdoublet
Overlap geneA030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196
Upstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb
Downstream geneLOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958, 5033414K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027A03.bB6Ng01-027A03.g
ACCDH857875DH857876
length1,011435
definitionDH857875|Mus musculus domesticus DNA, BAC clone: B6Ng01-027A03, 5' end.DH857876|Mus musculus domesticus DNA, BAC clone: B6Ng01-027A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,904,327 - 82,905,339)(83,034,842 - 83,035,282)
sequence
gaattctctttttttctctctctctttcaaaacttctgttttaatttaag
aataacttttgccatcaagttttacttctaaagataagttcagtgacatt
cagctagattttagcaagcatctagtctataaaaccacgtgatttttaac
ataatctgtgcaactataagcaattcaattcaatatgtttagcaactgaa
aatttcaggatgtcaaaatcaatctcttagcccatatcatgtcttcaact
gcagtctggggacttctaatgctccacatacacctctgcctgaggaatgc
cacatagcctcaattagattacaggatcatttcctttctcctgataaagt
ctgttcaggtagcccctgagatttctgaaatgctttcccatgctaatgag
gcatttcggtgccctaatccctcatccaatgacctttgcccattctaccc
tcagcccccccccccccaatgttataagccttcaatcacctttagtaaag
ttctctgcctcctaataatgggtatgatcgttctctgtaagtactcacag
ggcttccaagtcgtcaccaccccacctcctgccgtctctttccctactgc
cttcacggaccttgaggtcgacaatctatgatagcagggagacacgtgca
tgtaggtgcacatacccatgtgcccatgaatgcttgcatggagaccagaa
gaagatatttagtgccctcctcgctctacctcatccctttgtgacaaggg
tcttccactgaatctgggagtttgctctttctttctttctctttctttct
ttctttcttctttctttctttctttctttctttcttctttctttctttct
ttctttcttccttccttccttccttccttccttccttccttccttccttt
ctttttttttcccagctagactggctagccctggtgattctttgtccttc
aaccgcactcttctttactggggtggtaggaggcatgggaaagatccagc
ttgtgtgggtg
ataggaagagacaaatggagcagaggatcagacctggtttcccttcttct
tgccctactacgttgacgtggagagtcagcacattgcttgaggttgctct
cttcaggtactggcttcacttttttagcgctttacaaactggctgaggga
cctctgcttctagcctccggatcaaagacctgggggcttcattagcatat
gcaaagttgggcgcggctttggtcctgcgggactgacccggtgaccaagt
ccatctttacttgagatcgccgacccacatagctgaaagtgctacatatc
cgggacaagtgagcagcactagctttctataggtaagacctcccacggag
cgtagttaattaaagtccagaaaccctgggccgcccgcctttcctctccc
ctctctaatttggaggcggggtgggggtgggagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82904327_82905339
seq2: B6Ng01-027A03.b_45_1055

seq1  GAATTCTCTTTTTTTCTCTCTCTCTTTCAAAACTTCTGTTTTAATTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTTTTCTCTCTCTCTTTCAAAACTTCTGTTTTAATTTAAG  50

seq1  AATAACTTTTGCCATCAAGTTTTACTTCTAAAGATAAGTTCAGTGACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTTTGCCATCAAGTTTTACTTCTAAAGATAAGTTCAGTGACATT  100

seq1  CAGCTAGATTTTAGCAAGCATCTAGTCTATAAAACCACGTGATTTTTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGATTTTAGCAAGCATCTAGTCTATAAAACCACGTGATTTTTAAC  150

seq1  ATAATCTGTGCAACTATAAGCAATTCAATTCAATATGTTTAGCAACTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGTGCAACTATAAGCAATTCAATTCAATATGTTTAGCAACTGAA  200

seq1  AATTTCAGGATGTCAAAATCAATCTCTTAGCCCATATCATGTCTTCAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGGATGTCAAAATCAATCTCTTAGCCCATATCATGTCTTCAACT  250

seq1  GCAGTCTGGGGACTTCTAATGCTCCACATACACCTCTGCCTGAGGAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTGGGGACTTCTAATGCTCCACATACACCTCTGCCTGAGGAATGC  300

seq1  CACATAGCCTCAATTAGATTACAGGATCATTTCCTTTCTCCTGATAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGCCTCAATTAGATTACAGGATCATTTCCTTTCTCCTGATAAAGT  350

seq1  CTGTTCAGGTAGCCCCTGAGATTTCTGAAATGCTTTCCCATGCTAATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGGTAGCCCCTGAGATTTCTGAAATGCTTTCCCATGCTAATGAG  400

seq1  GCATTTCGGTGCCCTAATCCCTCATCCAATGACCTTTGCCCATTCTACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCGGTGCCCTAATCCCTCATCCAATGACCTTTGCCCATTCTACCC  450

seq1  TCAGCCCCCCCCCCCCCAATGTTATAAGCCTTCAATCACCTTTAGTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCCCCCCCCCCCAATGTTATAAGCCTTCAATCACCTTTAGTAAAG  500

seq1  TTCTCTGCCTCCTAATAATGGGTATGATCGTTCTCTGTAAGTACTCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCCTCCTAATAATGGGTATGATCGTTCTCTGTAAGTACTCACAG  550

seq1  GGCTTCCAAGTCGTCACCACCCCACCTCCTGCCGTCTCTTTCCCTACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCAAGTCGTCACCACCCCACCTCCTGCCGTCTCTTTCCCTACTGC  600

seq1  CTTCACGGACCTTGAGGTCGACAATCTATGATAGCAGGGAGACACGTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACGGACCTTGAGGTCGACAATCTATGATAGCAGGGAGACACGTGCA  650

seq1  TGTAGGTGCACATACCCATGTGCCCATGAATGCTTGCATGGAGACCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGCACATACCCATGTGCCCATGAATGCTTGCATGGAGACCAGAA  700

seq1  GAAGATATTTAGTGCCCTCCTCGCTCTACCTCATCCCTTTGTGACAA-GG  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAGATATTTAGTGCCCTCCTCGCTCTACCTCATCCCTTTGTGACAAGGG  750

seq1  TCTTCCACTGAATCT-GGAGTTTGCTCTTTCTTTCTTTCTCTTTCTTTCT  798
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTTCCACTGAATCTGGGAGTTTGCTCTTTCTTTCTTTCTCTTTCTTTCT  800

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  848
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCTTTC-TTCTTTCTTTCTTTCTTTCTTTCTTTC-TTCTTTCTTTCTTT  848

seq1  CTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  898

seq1  TTCTTTTTTTTTTTCCCAGCTAGACTGGCTAGCCCT-GTGATTCTTTGGC  947
      |||  ||||||||||||||||||||||||||||||| ||||||||||| |
seq2  TTC--TTTTTTTTTCCCAGCTAGACTGGCTAGCCCTGGTGATTCTTTGTC  946

seq1  CTTCAACCGCACTCTCCTATACTGGGGTTGTAGGTGCCCATGGGAATGCT  997
      ||||||||||||||| || ||||||||| ||||| |  |||||||| | |
seq2  CTTCAACCGCACTCTTCTTTACTGGGGTGGTAGGAG-GCATGGGAAAGAT  995

seq1  -CAGCTTTGTGTGGGTG  1013
       |||| |||||||||||
seq2  CCAGC-TTGTGTGGGTG  1011

seq1: chr1_83034842_83035282
seq2: B6Ng01-027A03.g_67_507 (reverse)

seq1  GTCTCCCACCCCCACCCCGCCTCCAAATTAGAGAGGGGAGAGGAAAGGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCACCCCCACCCCGCCTCCAAATTAGAGAGGGGAGAGGAAAGGCG  50

seq1  GGCGGCCCAGGGTTTCTGGACTTTAATTAACTACGCTCCGTGGGAGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCCCAGGGTTTCTGGACTTTAATTAACTACGCTCCGTGGGAGGTCT  100

seq1  TACCTATAGAAAGCTAGTGCTGCTCACTTGTCCCGGATATGTAGCACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATAGAAAGCTAGTGCTGCTCACTTGTCCCGGATATGTAGCACTTT  150

seq1  CAGCTATGTGGGTCGGCGATCTCAAGTAAAGATGGACTTGGTCACCGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATGTGGGTCGGCGATCTCAAGTAAAGATGGACTTGGTCACCGGGT  200

seq1  CAGTCCCGCAGGACCAAAGCCGCGCCCAACTTTGCATATGCTAATGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCGCAGGACCAAAGCCGCGCCCAACTTTGCATATGCTAATGAAGC  250

seq1  CCCCAGGTCTTTGATCCGGAGGCTAGAAGCAGAGGTCCCTCAGCCAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGTCTTTGATCCGGAGGCTAGAAGCAGAGGTCCCTCAGCCAGTTT  300

seq1  GTAAAGCGCTAAAAAAGTGAAGCCAGTACCTGAAGAGAGCAACCTCAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCGCTAAAAAAGTGAAGCCAGTACCTGAAGAGAGCAACCTCAAGC  350

seq1  AATGTGCTGACTCTCCACGTCAACGTAGTAGGGCAAGAAGAAGGGAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTGACTCTCCACGTCAACGTAGTAGGGCAAGAAGAAGGGAAACC  400

seq1  AGGTCTGATCCTCTGCTCCATTTGTCTCTTCCTATGAATTC  441
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGATCCTCTGCTCCATTTGTCTCTTCCTATGAATTC  441