BAC Information

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BAC

Clone NameB6Ng01-027E24
Chromosome1 (Build37)
Map Location 183,153,414 - 183,268,424
singlet/doubletdoublet
Overlap geneLOC100042363, LOC666519
Upstream genePsen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26
Downstream geneCnih3, Ccdc121, A230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027E24.bB6Ng01-027E24.g
ACCDH858089DH858090
length568366
definitionDH858089|Mus musculus domesticus DNA, BAC clone: B6Ng01-027E24, 5' end.DH858090|Mus musculus domesticus DNA, BAC clone: B6Ng01-027E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(183,267,851 - 183,268,424)(183,153,414 - 183,153,785)
sequence
cctttcacatgaacaataaaaattctataaactgcacagacctagctttg
ttcttgttatataagatgcaagtctctagaaagacttcttgtctttcaac
aaactggcttccgagacgaacttagcttttaaattttaaaatctaatcta
gtttgagtgacctctgtgtcccaggctggctccacctttcctgtgtagct
gtccagagtaaccaagaactgggggcttcggagtgaagaccaggctgcag
tcaagcattgccagtaacagtggtccttgtgggctaagggagtggatgcg
tgaccccaggggctctgtgctctgtctgtctggagtcacaggatcagcgt
gacctagatgttcattacatgagggcccagtggctggggagctgggacaa
ccttcctgacaaatccttgaaaaataaatgtctgggattttttagaaagg
ggtgtggtggtttggatgacagtgacccccatagtctcatccatttgcat
gtttagtccgcagttgatgaactgtttgggggtgtgtccttgttggacga
ggtggtaagtgggtgtgt
tttttttttttttcttggtttttcgagacagggtttctctgtgtagccct
ggctgtcctggaactcatctgtagaccagactggcctcgaactcagaaat
ctgcctgcctctgtctcccaagtgctgggatcaaacgtgtgcaccaccat
gcccggcagatctcttgatgagttcttaattaagttcagttaatctcttg
ttcctataatggtttatgttttttatgtttcactttagaagacattgcta
tgtcctcaaagacatgaggacagcctgctacagtgtcctctgggctcagt
gttgtctccttttttgtctgcagcctttaaagactgacttttgggagaag
ggtggcggggggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_183267851_183268424
seq2: B6Ng01-027E24.b_39_612 (reverse)

seq1  ACACACCCACTTACCACCTCGTCCAACAAGGACACACCCCCAAACAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCCACTTACCACCTCGTCCAACAAGGACACACCCCCAAACAGTTC  50

seq1  ATCAACTGCGGACTAAACATGCAAATGGATGAGACTATGGGGGTCACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTGCGGACTAAACATGCAAATGGATGAGACTATGGGGGTCACTGT  100

seq1  CATCCAAACCACCACACCCCTTTCTAAAAAATCCCAGACATTTATTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAACCACCACACCCCTTTCTAAAAAATCCCAGACATTTATTTTTC  150

seq1  AAGGATTTGTCAGGAAGGTTGTCCCAGCTCCCCAGCCACTGGGCCCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTTGTCAGGAAGGTTGTCCCAGCTCCCCAGCCACTGGGCCCTCAT  200

seq1  GTAATGAACATCTAGGTCACGCTGATCCTGTGACTCCAGACAGACAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAACATCTAGGTCACGCTGATCCTGTGACTCCAGACAGACAGAGC  250

seq1  ACAGAGCCCCTGGGGTCACGCATCCACTCCCTTAGCCCACAAGGACCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCCCTGGGGTCACGCATCCACTCCCTTAGCCCACAAGGACCACT  300

seq1  GTTACTGGCAATGCTTGACTGCAGCCTGGTCTTCACTCCGAAGCCCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGGCAATGCTTGACTGCAGCCTGGTCTTCACTCCGAAGCCCCCAG  350

seq1  TTCTTGGTTACTCTGGACAGCTACACAGGAAAGGTGGAGCCAGCCTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTTACTCTGGACAGCTACACAGGAAAGGTGGAGCCAGCCTGGGA  400

seq1  CACAGAGGTCACTCAAACTAGATTAGATTTTAAAATTTAAAAGCTAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGTCACTCAAACTAGATTAGATTTTAAAATTTAAAAGCTAAGTT  450

seq1  CGTCTCGGAAGCCAGTTTGTTGAAAGACAAGAAGTCTTTCTAGAGACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCGGAAGCCAGTTTGTTGAAAGACAAGAAGTCTTTCTAGAGACTTG  500

seq1  CATCTTATATAACAAGAACAAAGCTAGGTCTGTGCAGTTTATAGAATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATATAACAAGAACAAAGCTAGGTCTGTGCAGTTTATAGAATTTT  550

seq1  TATTGTTCATGTGAAAGGGAATTC  574
      ||||||||||||||||||||||||
seq2  TATTGTTCATGTGAAAGGGAATTC  574

seq1: chr1_183153414_183153785
seq2: B6Ng01-027E24.g_66_437

seq1  GAATTCTTTTTTTTTTTTTCTTGGTTTTTCGAGACAGGGTTTCTCTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTTTTTCTTGGTTTTTCGAGACAGGGTTTCTCTGTGT  50

seq1  AGCCCTGGCTGTCCTGGAACTCATCTGTAGACCAGACTGGCCTCGAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGAACTCATCTGTAGACCAGACTGGCCTCGAACTC  100

seq1  AGAAATCTGCCTGCCTCTGTCTCCCAAGTGCTGGGATCAAACGTGTGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTGCCTGCCTCTGTCTCCCAAGTGCTGGGATCAAACGTGTGCAC  150

seq1  CACCATGCCCGGCAGATCTCTTGATGAGTTCTTAATTAAGTTCAGTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGCCCGGCAGATCTCTTGATGAGTTCTTAATTAAGTTCAGTTAAT  200

seq1  CTCTTGTTCCTATAATGGTTTATGTTTTTTATGTTTCACTTTAGAAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTCCTATAATGGTTTATGTTTTTTATGTTTCACTTTAGAAGACA  250

seq1  TTGCTATGTCCTCAAAGACATGAGGACAGCCTGCTACAGTGTCCTCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATGTCCTCAAAGACATGAGGACAGCCTGCTACAGTGTCCTCTGGG  300

seq1  CTCAGTGTTGTCTCCTTTTTTGTCTGCAGCCTTTAAAGACTGACTTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTTGTCTCCTTTTTTGTCTGCAGCCTTTAAAGACTGACTTTTGG  350

seq1  GAGAAGGGTGGCGGGGGGAGGG  372
      ||||||||||||||||||||||
seq2  GAGAAGGGTGGCGGGGGGAGGG  372