BAC Information

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BAC

Clone NameB6Ng01-028A06
Chromosome1 (Build37)
Map Location 87,402,525 - 87,403,959
singlet/doubletsinglet
Overlap geneLOC100040213, LOC100039794
Upstream genenone
Downstream geneEG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028A06.bB6Ng01-028A06.g
ACCDH858606DH858607
length1,1731,221
definitionDH858606|Mus musculus domesticus DNA, BAC clone: B6Ng01-028A06, 5' end.DH858607|Mus musculus domesticus DNA, BAC clone: B6Ng01-028A06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagttcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccagaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaggtggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatatttgctccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctctttagatttgggaa
caaaacacccatggaaggagttacagagataaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccgaggcctagcaaac
acaaaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccaaggagctaaagggatctgcaaccct
atagatggaacacattatgaactaaccagtaccccggagctcttgactct
agctacatatatatcaaaagatggcctagtcgcatcactgtaaagagagg
ccatgacttgcaacttttatgctctagttcaggacacaaggtcaaaaagg
gaaggggtggcagggaatgggct
gaattcacattgcttagctcatctgctgtagtgacttttcatccttccct
tctgtgatacagggagtcacagctcttaactccagtcctgggctgagagc
tagagacaagcatgacgtaagatatactcacctgagaggtggtcccgcta
ctgtccactgtgctagaattccctacttcaccctattggtcattgtttaa
tttagatagcaactttgacaaaatacttggggtcagtcagggctactgtt
acaatcttctcttccagtcattgggcattctgtgtatactttgtaattaa
gcatcacacagacgagaaaataaggctttgcttgggaaaagagactctgg
gtatctcaatgcagacgtgatggttgtaatgagaatccaagactttctga
cacaaaccagtcatcaccagcaagtttaaacagtcctatcataagttgag
aagctggcatgtgatgctgactgtgacacagaaatttccagagtccacac
ttctgagcagatgaagctgggagacttgtaaaaatggaaatggatcttgg
attctgtttctctgggaattctgttcttacaaacagaaacacaaaataag
aggcaactgcctcttgttgctatgaaatactgcacccaagaattaaggat
ggtttcatcggctgaacagttctagcttgtttgagagacccagactgaga
tgctcttagcatgctggggaaggtagaggtactggcctttaaagtaattg
ttggacaggttatatcgtagcttccttctagaaaatggaatgggcaaaac
atcctggggattcagaattcaagcaagctagacaataatgccaaggacaa
attatacgatagcctggagttcagatttttaatgagctttgaagccagag
ttcagtgatatgtggcctgttgaagtctatgctaatagcatactaacttc
tccaacttaaagcagtcacattcaggagatgtagcccttcacacaaacaa
gatcatgggggaggaagacaaagctgaaaccagaaaagaggcgtaaggta
ggaatgagaggtgatgttaggatacaccattagcccatcagtagatgtct
ggtggaaatccacatggggagcctcaccctcttcttgcatgataccgtgg
aggatgggtgaaattctctcgcagataaggacctggaagtggatcgattc
aggtgtgagtgattcaacctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_87402525_87403959
seq2: B6Ng01-028A06.g_63_1283 (reverse)

seq1  AAGGTTGAATCAGTGATTGTAGGAAAACATTCTCAGAACTTAAGGAAGAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCAGCAGAGAAAGATGGATGTAAGGTGGGTCTTTCTAGCTGTCACAGGCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGTGATAGGTAACAAGAGGGAAATGGAGTCAGACAACTTGGGTCTGAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  CCAGGCAGAACTTTTGGAAGGAGGTTGGAAATGCAACTCATACCACTGAA  200
                           ||||||  |||   ||||| ||  |||||
seq2  --------------------AAGGTTG--AAT--CACTCACAC--CTGAA  24

seq1  ATACGGATACCTACATGCTCAGGTCCTTTTATCTTGCAGAGAAATTTTCT  250
         ||   | | || |   |||||||  ||||||   ||||||  |||| 
seq2  --TCG---ATCCACTT--CCAGGTCC--TTATCTGCGAGAGAA--TTTC-  62

seq1  ACCCAATCCTCCACGGATACATCTCAAAAGAAAAGAGGTGAGTGCTCACC  300
      |||| |||||||||||    |||    ||||| || |||||| |||| ||
seq2  ACCC-ATCCTCCACGG---TATCATGCAAGAAGAG-GGTGAG-GCTCCCC  106

seq1  ATGTGAGTTTTACACACAG-CATCTTACTGATGGCGCCTAAATTGGGTTG  349
      ||||| | ||| ||| ||| |||| ||||||||  | ||||  |||  ||
seq2  ATGTG-GATTTCCAC-CAGACATC-TACTGATG--GGCTAA--TGG--TG  147

seq1  TTATCCTTAACATCACCTCTCATTTCCTCCTCTACTGCCTTCTTTTCTGG  399
       ||||| ||||||||||||||| ||||| |  ||| ||| ||||||||||
seq2  -TATCC-TAACATCACCTCTCA-TTCCTACCTTAC-GCC-TCTTTTCTGG  192

seq1  TTTTCAGCCTGTGTCTTCCTTCCCCCATGCTCTTGTATTGTGTGTAGAGC  449
       |||||| || |||||||| ||||||||| |||||| ||||||| || ||
seq2  -TTTCAG-CTTTGTCTTCC-TCCCCCATGATCTTGT-TTGTGTGAAGGGC  238

seq1  TACATCCTCCTTGAATGTTGACTGCTTTAAGTTGGAGAAGTTAGTATGCT  499
      ||||| |||| |||||| ||||||||||||||||||||||||||||||||
seq2  TACAT-CTCC-TGAATG-TGACTGCTTTAAGTTGGAGAAGTTAGTATGCT  285

seq1  ATTAGCATAGACTTCAACAGGCCACATATCACTGAACTCTGGCTTCAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATAGACTTCAACAGGCCACATATCACTGAACTCTGGCTTCAAAG  335

seq1  CTCACTAAAAATCTGAACTCCAGGCTATCGTATAATTTGTCCTTGGCATT  599
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAAAAATCTGAACTCCAGGCTATCGTATAATTTGTCCTTGGCATT  385

seq1  ATTGTCTAGCTTGCTTGAATTCTGAATCCCCAGGATGTTTTGCCCACTCC  649
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTGTCTAGCTTGCTTGAATTCTGAATCCCCAGGATGTTTTGCCCATTCC  435

seq1  ATTTTCTAGAAGGAAGCTACGATATAACCTGTCCAACAATTACTTTAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAGAAGGAAGCTACGATATAACCTGTCCAACAATTACTTTAAAG  485

seq1  GCCAGTACCTCTACCTTCCCCAGCATGCTAAGAGCATCTCAGTCTGGGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTACCTCTACCTTCCCCAGCATGCTAAGAGCATCTCAGTCTGGGTC  535

seq1  TCTCAAACAAGCTAGAACTGTTCAGCCGATGAAACCATCCTTAATTCTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACAAGCTAGAACTGTTCAGCCGATGAAACCATCCTTAATTCTTG  585

seq1  GGTGCAGTATTTCATAGCAACAAGAGGCAGTTGCCTCTTATTTTGTGTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGTATTTCATAGCAACAAGAGGCAGTTGCCTCTTATTTTGTGTTT  635

seq1  CTGTTTGTAAGAACAGAATTCCCAGAGAAACAGAATCCAAGATCCATTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTAAGAACAGAATTCCCAGAGAAACAGAATCCAAGATCCATTTC  685

seq1  CATTTTTACAAGTCCCCCAGCTTCATCTGCTCAGAAGTGTGGACTCTGGA  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATTTTTACAAGTCTCCCAGCTTCATCTGCTCAGAAGTGTGGACTCTGGA  735

seq1  AATTTCTGTGTCACAGTCAGCATCACATGCCAGCTTCTCAACTTATGATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGTGTCACAGTCAGCATCACATGCCAGCTTCTCAACTTATGATA  785

seq1  GGACTGTTTAAACTTGCTGGTGATGACTGGTTTGTGTCAGAATGTCTTGG  1049
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGACTGTTTAAACTTGCTGGTGATGACTGGTTTGTGTCAGAAAGTCTTGG  835

seq1  ATTCTCATTACAACCATCACGTCTGCATTGAGATACCCAGAGTCTCTTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCATTACAACCATCACGTCTGCATTGAGATACCCAGAGTCTCTTTT  885

seq1  CCCAAGCAAAGCCTTATTTTCTCGTCTGTGTGATGCTTAATTACAAAGTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCAAAGCCTTATTTTCTCGTCTGTGTGATGCTTAATTACAAAGTA  935

seq1  TACACAGAATGCCCAATGACTGGAAGAGAAGATTGTAACAGTAGCCCTGA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAATGCCCAATGACTGGAAGAGAAGATTGTAACAGTAGCCCTGA  985

seq1  CTGACCCCAAGTATTTTGTCAAAGTTGCTATCTACATTAAACAATGACCA  1249
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGACCCCAAGTATTTTGTCAAAGTTGCTATCTAAATTAAACAATGACCA  1035

seq1  ATAGGGTGAAGTAGGGAATTCTAGCACAGTGGACAGTAGCGGGACCACCT  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTGAAGTAGGGAATTCTAGCACAGTGGACAGTAGCGGGACCACCT  1085

seq1  CTCAGGTGAGTATATCTTACGTCATGCTTGTCTCTAGCTCTCAGCCCAGG  1349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGAGTATATCTTACGTCATGCTTGTCTCTAGCTCTCAGCCCAGG  1135

seq1  ACTGGAGTTAAGAGCTGTGACTCCCTGTATCACAGAAGGGAAGGATGAAA  1399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTTAAGAGCTGTGACTCCCTGTATCACAGAAGGGAAGGATGAAA  1185

seq1  AGTCACTACAGCAGATGAGCTAAGCAATGTGAATTC  1435
      ||||||||||||||||||||||||||||||||||||
seq2  AGTCACTACAGCAGATGAGCTAAGCAATGTGAATTC  1221