BAC Information

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BAC

Clone NameB6Ng01-028F06
Chromosome1 (Build37)
Map Location 166,219,975 - 166,373,637
singlet/doubletdoublet
Overlap geneBlzf1, Nme7, Atp1b1
Upstream genePrrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik
Downstream geneLOC100040065, Dpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028F06.bB6Ng01-028F06.g
ACCDH858834DH858835
length1,132940
definitionDH858834|Mus musculus domesticus DNA, BAC clone: B6Ng01-028F06, 5' end.DH858835|Mus musculus domesticus DNA, BAC clone: B6Ng01-028F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,219,975 - 166,221,109)(166,372,693 - 166,373,637)
sequence
gaattccatacatagtgtcttctgaccacacctatctaatccctgtactg
catatgtctgaacccccttcacaagaccccccttccaactttatagactc
ttttttttgtttctgatcagaaagacaagtaggcatacaataggagtcac
tttgcaatatttcctactcattattgaaaaaaaaatcaatattctttagt
tttaaaacactttcctgcccttctccagaccctggtaccagtatttgccc
atttgtatctaacctagttcatgtaatattcatgtcaggcatcaagtgtg
cattttagaggttgaatgtattccttgtcatatggattttatttaatcat
tgattgatattaagattgtattttagcatccatgaacgacactgcttcaa
aaacttacacaaacatctatgacagtgcccaagttctcttggctataaac
ctagaatggtgggtcaggcaagatttttttctttttctttttttccttgg
aactggcgccatcttcaatgaaagctgctttccacatctgctggtaagca
gagcagttccagatttcaggcttgcctacagttgccatcttgcttttttg
ttaatagatactcaattttgttaatagtcatcttacctacatgaaaatgg
taatgatagcacttcactcattactgatgctgacaatcttctgatatgct
tctattcatgtgtatacacaaatatacatgtacattttaggtaactaata
atttgctcattttgcaagtatgtatggcacacatacacgttgagtgtgtg
cgcatacctgtcaaggacagaggcttatgcactgagtgtcttccttcatc
attttccaccttactgtctgagataggcaggagttaccacttagcttgaa
gctcatcaactcagccagagactgctcaatgaatgtcactcccccgtttg
tgctctaagtgtgctggctgggttatagatgtgtgctgctgcacccagtg
tttttgtgagtgcttggagatctgacttgggttctcatgttgtgtggcag
cattctaaaggactacagcatcctctcagcctctgcccactctaactggg
taggctactgtgtacctcaatgcatgatgctt
gaattcaccaggggagtggggatttaatccatcccgtgagccaagtggga
atgagtggcgagggaagcgtgtttgtgcggggaacgcctgcgtttggcgc
ctcccggtcgccttcctactaataatgaccgcctttctgactcttccctg
gcgtaggattgacacagattccccagatccagaagactgagatctccttc
cgtcctaatgaccccaagagctacgaggcctacgtgctaaacatcatcag
gttcctggaaaagtacaaggattcagcccagaaggacgacatgattttcg
aggactgtggcagtaagtgactggctcagggatggatgggtgcacgtggt
cccactattgagaaggacgggttgtcgtttggctccgttgctttagtagt
ttaaaggcaatgtcacggaattctcgttagaatttacacaaggttttcac
cttacttcacgacgatgagaaagggacgcatgataagcaaggagaaatca
tgaaggagaaatgagttaatgaaatagccattatgacaagaatagccata
cataatatcttagtcagggtttctattcctgcacaaaacatcatgaccga
gaagcaagttggggaggaaagggtttattcagcttacgtttccacattgc
tgttcatcaccaaaggaagtcaggactggaactcaagcacgtcagggagc
aggagctgatgcagaagccatggggggatgttcttactggcttgcttccc
ctggcttgctcatccttctctcttatagacccaagcctaccagcccaggg
atggcatcacgcacaagggccctccccccttgatcactaattgagaaaat
gccttacagttggatctatggaggcattttccaactgaagctcctttctc
tgtaatacttcagtctgtgtcaagttgaaacaaaattagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166219975_166221109
seq2: B6Ng01-028F06.b_44_1175

seq1  GAATTCCATACATAGTGTCTTCTGACCACACCTATCTAATCCCTGTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACATAGTGTCTTCTGACCACACCTATCTAATCCCTGTACTG  50

seq1  CATATGTCTGAACCCCCTTCACAAGACCCCCCTTCCAACTTTATAGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTCTGAACCCCCTTCACAAGACCCCCCTTCCAACTTTATAGACTC  100

seq1  TTTTTTTTGTTTCTGATCAGAAAGACAAGTAGGCATACAATAGGAGTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGTTTCTGATCAGAAAGACAAGTAGGCATACAATAGGAGTCAC  150

seq1  TTTGCAATATTTCCTACTCATTATTGAAAAAAAAATCAATATTCTTTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAATATTTCCTACTCATTATTGAAAAAAAAATCAATATTCTTTAGT  200

seq1  TTTAAAACACTTTCCTGCCCTTCTCCAGACCCTGGTACCAGTATTTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACACTTTCCTGCCCTTCTCCAGACCCTGGTACCAGTATTTGCCC  250

seq1  ATTTGTATCTAACCTAGTTCATGTAATATTCATGTCAGGCATCAAGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATCTAACCTAGTTCATGTAATATTCATGTCAGGCATCAAGTGTG  300

seq1  CATTTTAGAGGTTGAATGTATTCCTTGTCATATGGATTTTATTTAATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAGAGGTTGAATGTATTCCTTGTCATATGGATTTTATTTAATCAT  350

seq1  TGATTGATATTAAGATTGTATTTTAGCATCCATGAACGACACTGCTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGATATTAAGATTGTATTTTAGCATCCATGAACGACACTGCTTCAA  400

seq1  AAACTTACACAAACATCTATGACAGTGCCCAAGTTCTCTTGGCTATAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTACACAAACATCTATGACAGTGCCCAAGTTCTCTTGGCTATAAAC  450

seq1  CTAGAATGGTGGGTCAGGCAAGATTTTTTTCTTTTTCTTTTTTTCCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATGGTGGGTCAGGCAAGATTTTTTTCTTTTTCTTTTTTTCCTTGG  500

seq1  AACTGGCGCCATCTTCAATGAAAGCTGCTTTCCACATCTGCTGGTAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCGCCATCTTCAATGAAAGCTGCTTTCCACATCTGCTGGTAAGCA  550

seq1  GAGCAGTTCCAGATTTCAGGCTTGCCTACAGTTGCCATCTTGCTTTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTTCCAGATTTCAGGCTTGCCTACAGTTGCCATCTTGCTTTTTTG  600

seq1  TTAATAGATACTCAATTTTGTTAATAGTCATCTTACCTACATGAAAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGATACTCAATTTTGTTAATAGTCATCTTACCTACATGAAAATGG  650

seq1  TAATGATAGCACTTCACTCATTACTGATGCTGACAATCTTCTGATATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATAGCACTTCACTCATTACTGATGCTGACAATCTTCTGATATGCT  700

seq1  TCTATTCATGTGTATACACAAATATACATGTACATTTTAGGTAACTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCATGTGTATACACAAATATACATGTACATTTTAGGTAACTAATA  750

seq1  ATTTGCTCATTTTGCAAGTATGTATGGCACACATACACGTTGAGTGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTCATTTTGCAAGTATGTATGGCACACATACACGTTGAGTGTGTG  800

seq1  CGCATACCTGTCAAGGACAGAGGCTTATGCACTGAGTGTCTTCCTTCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATACCTGTCAAGGACAGAGGCTTATGCACTGAGTGTCTTCCTTCATC  850

seq1  ATTTTCCACCTTACTGTCTGAGATAGGCAGGAGTTACCACTTAGCTTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCACCTTACTGTCTGAGATAGGCAGGAGTTACCACTTAGCTTGAA  900

seq1  GCTCATCAACTCAGCCAGAGACTGCTCAATGAATGTCACTCCCCCGTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCAACTCAGCCAGAGACTGCTCAATGAATGTCACTCCCCCGTTTG  950

seq1  TGCTCTAAGTGTGCTGGCTGGGTTATAGATGTGTGCTGCTGCACCCAGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAAGTGTGCTGGCTGGGTTATAGATGTGTGCTGCTGCACCCAGTG  1000

seq1  TTTTTTGTGAGTGCTTGGAGATCTGGACTTGGGTTCTCATGTTGTGTGGC  1050
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  -TTTTTGTGAGTGCTTGGAGATCT-GACTTGGGTTCTCATGTTGTGTGGC  1048

seq1  AGCATTCTACA-GACTACAGCATCTCTTCAGCCTCTGCCCACTTCTAACT  1099
      ||||||||| | ||||||||||||   ||||||||||||||| |||||||
seq2  AGCATTCTAAAGGACTACAGCATCCTCTCAGCCTCTGCCCAC-TCTAACT  1097

seq1  GGGTAGGCTACTGTGTACCTCAATGCATGAATGCTT  1135
      ||||||||||||||||||||||||||||| ||||||
seq2  GGGTAGGCTACTGTGTACCTCAATGCATG-ATGCTT  1132

seq1: chr1_166372693_166373637
seq2: B6Ng01-028F06.g_67_1006 (reverse)

seq1  GCTAGTTTTGTGTCAACTTGACACAGGCTGGAGTTATCACAGAGAAAGGA  50
      |||| |||||| |||||||||||||| ||| || ||| ||||||||||||
seq2  GCTAATTTTGTTTCAACTTGACACAGACTGAAG-TATTACAGAGAAAGGA  49

seq1  GCTTCAGTTGGGAAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCT  100
      ||||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  GCTTCAGTT-GGAAAATGCCTCCAT-AGATCCAACTGTAAGGCATTTTCT  97

seq1  CAATTAGTGATCAAGGGGGGAGGGCCCCTTGTGCGTGGTGCCATCCCTGG  150
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  CAATTAGTGATCAAGGGGGGAGGG-CCCTTGTGCGTGATGCCATCCCTGG  146

seq1  GCTGGTAGGCTTGGGTTCTATAAGAGAGAAGGATGAGCAAGCCAGGGGAA  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTGGTAGGCTTGGG-TCTATAAGAGAGAAGGATGAGCAAGCCAGGGGAA  195

seq1  GCAAGCCAGTAAGAACATCCCCCCATGGCTTCTGCATCAGCTCCTGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCAGTAAGAACATCCCCCCATGGCTTCTGCATCAGCTCCTGCTCC  245

seq1  CTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAAT  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACGTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAAT  295

seq1  GTGGAAACGTAAGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTCGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAACGTAAGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTCGGT  345

seq1  CATGATGTTTTGTGCAGGAATAGAAACCCTGACTAAGATATTATGTATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTTTTGTGCAGGAATAGAAACCCTGACTAAGATATTATGTATGG  395

seq1  CTATTCTTGTCATAATGGCTATTTCATTAACTCATTTCTCCTTCATGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTTGTCATAATGGCTATTTCATTAACTCATTTCTCCTTCATGATT  445

seq1  TCTCCTTGCTTATCATGCGTCCCTTTCTCATCGTCGTGAAGTAAGGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGCTTATCATGCGTCCCTTTCTCATCGTCGTGAAGTAAGGTGAA  495

seq1  AACCTTGTGTAAATTCTAACGAGAATTCCGTGACATTGCCTTTAAACTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGTGTAAATTCTAACGAGAATTCCGTGACATTGCCTTTAAACTAC  545

seq1  TAAAGCAACGGAGCCAAACGACAACCCGTCCTTCTCAATAGTGGGACCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAACGGAGCCAAACGACAACCCGTCCTTCTCAATAGTGGGACCAC  595

seq1  GTGCACCCATCCATCCCTGAGCCAGTCACTTACTGCCACAGTCCTCGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCCATCCATCCCTGAGCCAGTCACTTACTGCCACAGTCCTCGAAA  645

seq1  ATCATGTCGTCCTTCTGGGCTGAATCCTTGTACTTTTCCAGGAACCTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTCGTCCTTCTGGGCTGAATCCTTGTACTTTTCCAGGAACCTGAT  695

seq1  GATGTTTAGCACGTAGGCCTCGTAGCTCTTGGGGTCATTAGGACGGAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTAGCACGTAGGCCTCGTAGCTCTTGGGGTCATTAGGACGGAAGG  745

seq1  AGATCTCAGTCTTCTGGATCTGGGGAATCTGTGTCAATCCTACGCCAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCAGTCTTCTGGATCTGGGGAATCTGTGTCAATCCTACGCCAGGG  795

seq1  AAGAGTCAGAAAGGCGGTCATTATTAGTAGGAAGGCGACCGGGAGGCGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCAGAAAGGCGGTCATTATTAGTAGGAAGGCGACCGGGAGGCGCC  845

seq1  AAACGCAGGCGTTCCCCGCACAAACACGCTTCCCTCGCCACTCATTCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCAGGCGTTCCCCGCACAAACACGCTTCCCTCGCCACTCATTCCCA  895

seq1  CTTGGCTCACGGGATGGATTAAATCCCCACTCCCCTGGTGAATTC  945
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCACGGGATGGATTAAATCCCCACTCCCCTGGTGAATTC  940