BAC Information

Click to search

BAC

Clone NameB6Ng01-028L02
Chromosome1 (Build37)
Map Location 72,530,409 - 72,666,370
singlet/doubletdoublet
Overlap geneMarch4, Smarcal1
Upstream geneLOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5
Downstream geneAnkar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028L02.bB6Ng01-028L02.g
ACCDH859105DH859106
length1,1331,111
definitionDH859105|Mus musculus domesticus DNA, BAC clone: B6Ng01-028L02, 5' end.DH859106|Mus musculus domesticus DNA, BAC clone: B6Ng01-028L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,665,230 - 72,666,370)(72,530,409 - 72,531,531)
sequence
gaattctctgtaagcaagagctctgtgtgtctctggttgctctgtgtctc
tggtatgttgctatgtgggattcatgtcatgtagtttactgaaatcatca
gctttcatgttagttgacactaccaatttaatctggtcttagttcaaacc
taaaagatgaggttaaaacattctctacacaaatccctgtaagctcaaca
ctgagaaataagtgataactgaggaaagacacttagcggcgactctcctc
ttcccctctactgagaccacagctggaagaaccaacggttagtgccgcag
accctctgggtccctgtgtctgcgtggaacggggtctctcgacgcgggtg
gacaaagtgtggacacacacacaggagagtttgtgtggattctgaatgta
attttttaaatcgaacatcagactttttatgcagaagacaacaaggtagt
tgggtgacatacccacaaggtacaaatgaggtaaccagatgcttaatgac
tcttacacagaacagaggaatgaaaacgcaaagactggcaggaactgggc
aataaaataactgagacaaagtcagccctatctaaggtcagctatagtct
tagaagccaggtgtgagaacttttcactcctagggcaagggctttcacac
ccaagccatggttctaactagggagttccgttctagctaaccatctcatg
aataatgcaatactctaaaaccacagccagatctagagcacgtggatcca
tacactagactaacgcgggaatggaacacgggaatgaaaaattactgtat
gggtagggaacgctagactccaggaggagagcttccttgaaactcttttg
cctcatgagtgacttttaagcctctcagcttgtccagttgactcaaccag
agagcgtagcagttagatcacggctaatggaggtttttcccagacaaggg
aacgtggtaggaggatccactggctggtcacccattaattactccctctt
tccactacgtatgtttgttttattttaattaatttcggttttttgagaca
gattctctgtgtagccctgccgtcctggaattcactctgtagaacaggct
ggcccgaactcagaattccctgctctgcctctg
gaattccagatcttacctatgtattctagattttttcgtattcattggtt
ttgagtctttcactgtgaaccaccttgtatatatccctggacgtttatgt
cccttgcacatggcgaatatttggctgacatgagagacacaggaatttct
ggattttaatgaacatagaccatgatcatgttgacattactaaggtatga
gataggagataagcaggatattaggtttttgttgttgtttttaaatatat
attttaaattcaaatataattgaatcagttcccacctcccctttcctccc
ttcaacacctttcctgtcctctccactcccatttttctttaatgttgcaa
gtatgtatgtatgtatgtaatgcataaatatataaatacaattcgcggtg
tccctttagtgttgctcctgtgtatgtgatttcagggatggccatttgaa
attggatgatcaattagggggtctcatccctgggacaactaattctccct
ccctgggcactccttagctgcctgtagctcttcgtcatttttttcccccc
acaagatgggttgtctctgtgtagccctggctgtcctggaacttactctg
cagaccagactggccttgaactcaagatccacctgcctgtcttccaagtg
ctgggattaaaggcgtgagccactacagcctggcctgtctattcttttaa
aataaaaaaagtcatatttgacaggaaagccctatctaaacaaaaacaaa
caaaataagtcatactttattgtaaagaattttgaaaaatattaacaaaa
aagtataatgtggtgaacattacagcattcagaaagcatgggcaagtaga
tctctcagttcaaggccagcctgatcgacatatcaagtgctaggccagcc
aagactatacagtaagaccccatctcaaaaccaaaacaaacaaaagtagg
ctgttagctctaaccctaccactagagattaaacagtggttatactttga
tatttttctaatcttttcttaaatgaaaaactaaaaatacaactggagtc
caactttggatcccttttatatttgggaggttccgatgtcacctgtagac
ctggaagcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_72665230_72666370
seq2: B6Ng01-028L02.b_41_1173 (reverse)

seq1  CAGAGGCAG---GGGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAG  47
      |||||||||    |||| ||||||||||| |||||||||| |||||||||
seq2  CAGAGGCAGAGCAGGGAATTCTGAGTTCG-GGCCAGCCTGTTCTACAGAG  49

seq1  TGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAA  97
      ||| ||||||||| | |||||||||||||||||   ||||||| ||||||
seq2  TGAATTCCAGGAC-GGCAGGGCTACACAGAGAA--TCTGTCTC-AAAAAA  95

seq1  CCAAAAATAAATAAAAAATAAAAACAAACATACGTAGTGGAAAGA-GGAG  146
      || ||| ||| |||||    ||||||||||||||||||||||||| ||||
seq2  CCGAAATTAATTAAAA---TAAAACAAACATACGTAGTGGAAAGAGGGAG  142

seq1  TAAATTAATGGGTGACCAAGCCAGTGGATCCTCCTACCACGTTCCCTTGT  196
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  T-AATTAATGGGTGACC-AGCCAGTGGATCCTCCTACCACGTTCCCTTGT  190

seq1  CTGGGAAAAAACCTCCATTAGCCCTGATCTAACCTGCTACGCTCTCTGGT  246
      ||||| ||||||||||||||||| |||||||| |||||||||||||||||
seq2  CTGGG-AAAAACCTCCATTAGCCGTGATCTAA-CTGCTACGCTCTCTGGT  238

seq1  TGAGTCAACTGGACAAGCTGAGAGGCTTAAAAGTCACTCATGAGGCAAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAACTGGACAAGCTGAGAGGCTTAAAAGTCACTCATGAGGCAAAA  288

seq1  GAGTTTCAAGGAAGCTCTCCTCCTGGAGTCTAGCGTTCCCTACCCATACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCAAGGAAGCTCTCCTCCTGGAGTCTAGCGTTCCCTACCCATACA  338

seq1  GTAATTTTTCATTCCCGTGTTCCATTCCCGCGTTAGTCTAGTGTATGGAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTTCATTCCCGTGTTCCATTCCCGCGTTAGTCTAGTGTATGGAT  388

seq1  CCACGTGCTCTAGATCTGGCTGTGGTTTTAGAGTATTGCATTATTCATGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGCTCTAGATCTGGCTGTGGTTTTAGAGTATTGCATTATTCATGA  438

seq1  GATGGTTAGCTAGAACGGAACTCCCTAGTTAGAACCATGGCTTGGGTGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTAGCTAGAACGGAACTCCCTAGTTAGAACCATGGCTTGGGTGTG  488

seq1  AAAGCCCTTGCCCTAGGAGTGAAAAGTTCTCACACCTGGCTTCTAAGACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTTGCCCTAGGAGTGAAAAGTTCTCACACCTGGCTTCTAAGACT  538

seq1  ATAGCTGACCTTAGATAGGGCTGACTTTGTCTCAGTTATTTTATTGCCCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGACCTTAGATAGGGCTGACTTTGTCTCAGTTATTTTATTGCCCA  588

seq1  GTTCCTGCCAGTCTTTGCGTTTTCATTCCTCTGTTCTGTGTAAGAGTCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGCCAGTCTTTGCGTTTTCATTCCTCTGTTCTGTGTAAGAGTCAT  638

seq1  TAAGCATCTGGTTACCTCATTTGTACCTTGTGGGTATGTCACCCAACTAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATCTGGTTACCTCATTTGTACCTTGTGGGTATGTCACCCAACTAC  688

seq1  CTTGTTGTCTTCTGCATAAAAAGTCTGATGTTCGATTTAAAAAATTACAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGTCTTCTGCATAAAAAGTCTGATGTTCGATTTAAAAAATTACAT  738

seq1  TCAGAATCCACACAAACTCTCCTGTGTGTGTGTCCACACTTTGTCCACCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATCCACACAAACTCTCCTGTGTGTGTGTCCACACTTTGTCCACCC  788

seq1  GCGTCGAGAGACCCCGTTCCACGCAGACACAGGGACCCAGAGGGTCTGCG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCGAGAGACCCCGTTCCACGCAGACACAGGGACCCAGAGGGTCTGCG  838

seq1  GCACTAACCGTTGGTTCTTCCAGCTGTGGTCTCAGTAGAGGGGAAGAGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAACCGTTGGTTCTTCCAGCTGTGGTCTCAGTAGAGGGGAAGAGGA  888

seq1  GAGTCGCCGCTAAGTGTCTTTCCTCAGTTATCACTTATTTCTCAGTGTTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCGCCGCTAAGTGTCTTTCCTCAGTTATCACTTATTTCTCAGTGTTG  938

seq1  AGCTTACAGGGATTTGTGTAGAGAATGTTTTAACCTCATCTTTTAGGTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACAGGGATTTGTGTAGAGAATGTTTTAACCTCATCTTTTAGGTTT  988

seq1  GAACTAAGACCAGATTAAATTGGTAGTGTCAACTAACATGAAAGCTGATG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAGACCAGATTAAATTGGTAGTGTCAACTAACATGAAAGCTGATG  1038

seq1  ATTTCAGTAAACTACATGACATGAATCCCACATAGCAACATACCAGAGAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTAAACTACATGACATGAATCCCACATAGCAACATACCAGAGAC  1088

seq1  ACAGAGCAACCAGAGACACACAGAGCTCTTGCTTACAGAGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCAACCAGAGACACACAGAGCTCTTGCTTACAGAGAATTC  1133

seq1: chr1_72530409_72531531
seq2: B6Ng01-028L02.g_67_1177

seq1  GAATTCCAGATCTTACCTATGTATTCTAGATTTTTTCGTATTCATTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATCTTACCTATGTATTCTAGATTTTTTCGTATTCATTGGTT  50

seq1  TTGAGTCTTTCACTGTGAACCACCTTGTATATATCCCTGGACGTTTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCTTTCACTGTGAACCACCTTGTATATATCCCTGGACGTTTATGT  100

seq1  CCCTTGCACATGGCGAATATTTGGCTGACATGAGAGACACAGGAATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCACATGGCGAATATTTGGCTGACATGAGAGACACAGGAATTTCT  150

seq1  GGATTTTAATGAACATAGACCATGATCATGTTGACATTACTAAGGTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTAATGAACATAGACCATGATCATGTTGACATTACTAAGGTATGA  200

seq1  GATAGGAGATAAGCAGGATATTAGGTTTTTGTTGTTGTTTTTAAATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAGATAAGCAGGATATTAGGTTTTTGTTGTTGTTTTTAAATATAT  250

seq1  ATTTTAAATTCAAATATAATTGAATCAGTTCCCACCTCCCCTTTCCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATTCAAATATAATTGAATCAGTTCCCACCTCCCCTTTCCTCCC  300

seq1  TTCAACACCTTTCCTGTCCTCTCCACTCCCATTTTTCTTTAATGTTGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACCTTTCCTGTCCTCTCCACTCCCATTTTTCTTTAATGTTGCAA  350

seq1  GTATGTATGTATGTATGTAATGCATAAATATATAAATACAATTCGCGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATGTATGTATGTAATGCATAAATATATAAATACAATTCGCGGTG  400

seq1  TCCCTTTAGTGTTGCTCCTGTGTATGTGATTTCAGGGATGGCCATTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTAGTGTTGCTCCTGTGTATGTGATTTCAGGGATGGCCATTTGAA  450

seq1  ATTGGATGATCAATTAGGGGGTCTCATCCCTGGGACAACTAATTCTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATGATCAATTAGGGGGTCTCATCCCTGGGACAACTAATTCTCCCT  500

seq1  CCCTGGGCACTCCTTAGCTGCCTGTAGCTCTTCGTCATTTTTTTCCCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGCACTCCTTAGCTGCCTGTAGCTCTTCGTCATTTTTTTCCCCCC  550

seq1  ACAAGATGGGTTGTCTCTGTGTAGCCCTGGCTGTCCTGGAACTTACTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATGGGTTGTCTCTGTGTAGCCCTGGCTGTCCTGGAACTTACTCTG  600

seq1  CAGACCAGACTGGCCTTGAACTCAAGATCCACCTGCCTGTCTTCCAAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAGACTGGCCTTGAACTCAAGATCCACCTGCCTGTCTTCCAAGTG  650

seq1  CTGGGATTAAAGGCGTGAGCCACTACAGCCTGGCCTGTCTATTCTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAGGCGTGAGCCACTACAGCCTGGCCTGTCTATTCTTTTAA  700

seq1  AATAAAAAAAGTCATATTTGACAGGAAAGCCCTATCTAAACAAAAACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAAAGTCATATTTGACAGGAAAGCCCTATCTAAACAAAAACAAA  750

seq1  CAAAATAAGTCATACTTTATTGTAAAGAA-TTTGAAAAATATTAACAAAA  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAAAATAAGTCATACTTTATTGTAAAGAATTTTGAAAAATATTAACAAAA  800

seq1  AAGTATAATGTGGTGAACATTACAGCATTCAGAAAGCATGGGCAAGTAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAATGTGGTGAACATTACAGCATTCAGAAAGCATGGGCAAGTAGA  850

seq1  TCTCTCAGTTCAAGGCCAGCCTGATCGACATATCAAGTGCTAGGCCAGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAGTTCAAGGCCAGCCTGATCGACATATCAAGTGCTAGGCCAGCC  900

seq1  AAGACTATACAGTAAGACCCCATCTCAAAACCAAAACAAAACAAAAGGTA  949
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  AAGACTATACAGTAAGACCCCATCTCAAAACCAAAAC-AAACAAAA-GTA  948

seq1  GGCTGTTTAGCTCTAACCCTACCACCTAGAGA-TAAACAGTGTTAATACT  998
      ||||| |||||||||||||||||| ||||||| ||||||||| | |||||
seq2  GGCTG-TTAGCTCTAACCCTACCA-CTAGAGATTAAACAGTGGTTATACT  996

seq1  TTGATATTTTTCTTAAAATCTTTTCTTTAAATGAAATACTTAAAAATACA  1048
      |||||||||||||   ||||||||| |||||||||| || ||||||||| 
seq2  TTGATATTTTTCT---AATCTTTTC-TTAAATGAAAAAC-TAAAAATAC-  1040

seq1  AACTGGAGTCAAACTTTGGATCCCTTTTATATTTGGGAGGGTATCCGATG  1098
      |||||||||| |||||||||||||||||||||||||||||   |||||||
seq2  AACTGGAGTCCAACTTTGGATCCCTTTTATATTTGGGAGG--TTCCGATG  1088

seq1  TCACTATGTAGCACCTGGAAGCATG  1123
      ||||  ||||| |||||||||||||
seq2  TCAC-CTGTAG-ACCTGGAAGCATG  1111