BAC Information

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BAC

Clone NameB6Ng01-029G09
Chromosome1 (Build37)
Map Location 175,239,932 - 175,382,112
singlet/doubletdoublet
Overlap geneDarc, Cadm3
Upstream geneIgsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403
Downstream geneAim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029G09.bB6Ng01-029G09.g
ACCDH859610DH859611
length1,1141,128
definitionDH859610|Mus musculus domesticus DNA, BAC clone: B6Ng01-029G09, 5' end.DH859611|Mus musculus domesticus DNA, BAC clone: B6Ng01-029G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(175,380,972 - 175,382,112)(175,239,932 - 175,241,092)
sequence
gaattctataaccccttcccccaggctagactgagcaactggaattgtgt
aagtcagtctgcatgctcacttcctctatctcttctccttggatctgggt
cagacagaaggatgagcagaaaggtctccacccacaggcaacatggccca
aatctagcccagaattctgctcactgcagtgggaagtagcaagaaacaga
aagtaacgccttttagacccaggccacatctcatagatgaaacctccctc
ccgacatacactagaactaagcaattgcctacatgccagtgggactgtct
caagcttgcttagatcgttaccagcctggcagtgagaaagggacacacac
cctactctgaccacatattttctctgcctgtgagtcccaggtgtgacaca
ggttagtgtcgcccttggtggaccctagatttgggtatcagctctcttca
ggttagtgttatcagacagatcatcaagcacaaattatcaagatcatttg
acatgacttaccaccaagcagggacttataccctactgggatgtcatatt
tgggcctgtttgtctactgggatggcatagacctgggtgcactcaccatg
aaattcagaaagagaaacaagaattcaaagctaactcactggccactgcc
aatagcagacctagcatccatgggaagtgggtgttgagggattgtagcaa
aggagaacacatgtttcagaagctaagaaaagatcactcttaaagttttt
tttttttttaagaatcaactgtgtctcttgtttgttttgctataaagcta
cctaaggtgaaggctacagatgtgtcatggggttagccatgtggggttac
gggtagcaagaagagcgacaaggaagtgggatggaagttcaacacaagtc
ttgctgtaaagggctagagaaatgtgataaaagacagggtaggagtggga
taggaatggagaaagtgacttaaattgcttcttgatctctttctaacatg
aaggatagtcttgcttatgctgatgaaatgtctacaaggggcaatctgtg
gtataaaacaagaaatgctcttggagtagctgggatgacctcttctggag
tacactcgaaacaa
gaattctctgattgactcatctagattctttactcctactcctgacagaa
tgggtcccattactgtgctgagcacattgcacatggtgcttttccagata
tgtctttgcctagaaacaatgattagttcagaaatgaacctggagcccaa
catggacagagttttccagggattgcatagttcctgaggtttgtctactg
taaaattgtcgatgctgaagaccatggaggcctggagatgccagaggctg
cttttgccattgactggaaagtgcttgaggagagaagaacatcagctgga
atataagagcaaagagattaaagacaccttatgatgatgctggagtcaca
gtagcgaccacacctactatgaaaccctgggctccatgaacaaggacatt
catttagtttcatcatttttcctgttacctagtccaggttgcatttgtgg
cattcacaatgaaagtactgcaaacaatatacagccttcttgcctgtctt
tggattttgttctttttgtttttcaggtcactgttctggcacaacttctc
cacccaagtccccacgacagcagataaaagactgaatagagatgacagta
ttttactgttacaagacacacacacacaaaaacttacttgactcccctgt
catttgtctcttggacttgtgttctgttgcgatcatggttacacgtgagg
aagtattagttcataaagttcaggtgctttgtccaatattaacagctaga
aagcagctgtagtgagattttcatcctggactgactgacacccaaaccta
actttgttacactgaccaaatcctcacttaagaaatgaaattattactgg
ctgttgtttttaagtgttcttgaccaagttttctcccactgtctatatct
ccacagctgctgaattctctcagctactcactgtagttccccttcacagc
tctcaaatgagatatgatctctcagtgtctgaaatcatttatatgagaat
gttcagattggcattcagactttttgtgctaggttagacctttctagtcc
ctccagcaggagccatgaacagagatagggtagttcgattgtgctacatg
gtgagatacggggttacagatttgagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175380972_175382112
seq2: B6Ng01-029G09.b_45_1158 (reverse)

seq1  TTGTTTCAGAAGGTGTACTCCAGAGGA-GTCATCCTCAGGCTCACTCCCA  49
      ||||||| ||  |||||||||||| || ||||||| || ||| ||| |||
seq2  TTGTTTC-GA--GTGTACTCCAGAAGAGGTCATCC-CA-GCT-ACT-CCA  43

seq1  GGAGCAATTTTCCTTTTGTTCTTCTATACCACAGCTCGCCCCCTTCTAGA  99
       |||||        ||| || || |||||||||| | | |||||| ||| 
seq2  AGAGCA--------TTTCTTGTTTTATACCACAGATTG-CCCCTTGTAG-  83

seq1  ACATTCTCATCAGCATGAAGCAAGACTGATTCCTCTCATGTTAGAAAAGA  149
      ||||| |||||||||| ||||||||||   |||| ||||||||| |||||
seq2  ACATT-TCATCAGCAT-AAGCAAGACT--ATCCT-TCATGTTAG-AAAGA  127

seq1  GATCAAGTGAGCAATTATAAGTCACTTTCTCCATTTCCTATCCCACCTCC  199
      |||||||  ||||||| |||||||||||||||| ||||||||||| ||||
seq2  GATCAAG-AAGCAATT-TAAGTCACTTTCTCCA-TTCCTATCCCA-CTCC  173

seq1  TACCCTGTCTTTTATCACATTTCTCTGGCCCTTTTACAGCAAGACTTGTG  249
      |||||||||||||||||||||||||| |||| ||||||||||||||||||
seq2  TACCCTGTCTTTTATCACATTTCTCTAGCCC-TTTACAGCAAGACTTGTG  222

seq1  TTGAACTTCCATCCCACTTCCTTGTCGCTCTTCTTGCTACCCGTAACCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTCCATCCCACTTCCTTGTCGCTCTTCTTGCTACCCGTAACCCC  272

seq1  ACATGGCTAACCCCATGACACATCTGTAGCCTTCACCTTAGGTAGCTTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTAACCCCATGACACATCTGTAGCCTTCACCTTAGGTAGCTTTA  322

seq1  TAGCAAAACAAACAAGAGACACAGTTGATTCTTAAAAAAAAAAAAAACTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAACAAACAAGAGACACAGTTGATTCTTAAAAAAAAAAAAAACTT  372

seq1  TAAGAGTGATCTTTTCTTAGCTTCTGAAACATGTGTTCTCCTTTGCTACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTGATCTTTTCTTAGCTTCTGAAACATGTGTTCTCCTTTGCTACA  422

seq1  ATCCCTCAACACCCACTTCCCATGGATGCTAGGTCTGCTATTGGCAGTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCAACACCCACTTCCCATGGATGCTAGGTCTGCTATTGGCAGTGG  472

seq1  CCAGTGAGTTAGCTTTGAATTCTTGTTTCTCTTTCTGAATTTCATGGTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAGTTAGCTTTGAATTCTTGTTTCTCTTTCTGAATTTCATGGTGA  522

seq1  GTGCACCCAGGTCTATGCCATCCCAGTAGACAAACAGGCCCAAATATGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCCAGGTCTATGCCATCCCAGTAGACAAACAGGCCCAAATATGAC  572

seq1  ATCCCAGTAGGGTATAAGTCCCTGCTTGGTGGTAAGTCATGTCAAATGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGTAGGGTATAAGTCCCTGCTTGGTGGTAAGTCATGTCAAATGAT  622

seq1  CTTGATAATTTGTGCTTGATGATCTGTCTGATAACACTAACCTGAAGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAATTTGTGCTTGATGATCTGTCTGATAACACTAACCTGAAGAGA  672

seq1  GCTGATACCCAAATCTAGGGTCCACCAAGGGCGACACTAACCTGTGTCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATACCCAAATCTAGGGTCCACCAAGGGCGACACTAACCTGTGTCAC  722

seq1  ACCTGGGACTCACAGGCAGAGAAAATATGTGGTCAGAGTAGGGTGTGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGACTCACAGGCAGAGAAAATATGTGGTCAGAGTAGGGTGTGTGT  772

seq1  CCCTTTCTCACTGCCAGGCTGGTAACGATCTAAGCAAGCTTGAGACAGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTCACTGCCAGGCTGGTAACGATCTAAGCAAGCTTGAGACAGTC  822

seq1  CCACTGGCATGTAGGCAATTGCTTAGTTCTAGTGTATGTCGGGAGGGAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGCATGTAGGCAATTGCTTAGTTCTAGTGTATGTCGGGAGGGAGG  872

seq1  TTTCATCTATGAGATGTGGCCTGGGTCTAAAAGGCGTTACTTTCTGTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTATGAGATGTGGCCTGGGTCTAAAAGGCGTTACTTTCTGTTTC  922

seq1  TTGCTACTTCCCACTGCAGTGAGCAGAATTCTGGGCTAGATTTGGGCCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACTTCCCACTGCAGTGAGCAGAATTCTGGGCTAGATTTGGGCCAT  972

seq1  GTTGCCTGTGGGTGGAGACCTTTCTGCTCATCCTTCTGTCTGACCCAGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTGTGGGTGGAGACCTTTCTGCTCATCCTTCTGTCTGACCCAGAT  1022

seq1  CCAAGGAGAAGAGATAGAGGAAGTGAGCATGCAGACTGACTTACACAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAGAAGAGATAGAGGAAGTGAGCATGCAGACTGACTTACACAATT  1072

seq1  CCAGTTGCTCAGTCTAGCCTGGGGGAAGGGGTTATAGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGCTCAGTCTAGCCTGGGGGAAGGGGTTATAGAATTC  1114

seq1: chr1_175239932_175241092
seq2: B6Ng01-029G09.g_65_1192

seq1  GAATTCTCTGATTGACTCATCTAGATTCTTTACTCCTACTCCTGACAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGATTGACTCATCTAGATTCTTTACTCCTACTCCTGACAGAA  50

seq1  TGGGTCCCATTACTGTGCTGAGCACATTGCACATGGTGCTTTTCCAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCCATTACTGTGCTGAGCACATTGCACATGGTGCTTTTCCAGATA  100

seq1  TGTCTTTGCCTAGAAACAATGATTAGTTCAGAAATGAACCTGGAGCCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGCCTAGAAACAATGATTAGTTCAGAAATGAACCTGGAGCCCAA  150

seq1  CATGGACAGAGTTTTCCAGGGATTGCATAGTTCCTGAGGTTTGTCTACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACAGAGTTTTCCAGGGATTGCATAGTTCCTGAGGTTTGTCTACTG  200

seq1  TAAAATTGTCGATGCTGAAGACCATGGAGGCCTGGAGATGCCAGAGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGTCGATGCTGAAGACCATGGAGGCCTGGAGATGCCAGAGGCTG  250

seq1  CTTTTGCCATTGACTGGAAAGTGCTTGAGGAGAGAAGAACATCAGCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCCATTGACTGGAAAGTGCTTGAGGAGAGAAGAACATCAGCTGGA  300

seq1  ATATAAGAGCAAAGAGATTAAAGACACCTTATGATGATGCTGGAGTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGAGCAAAGAGATTAAAGACACCTTATGATGATGCTGGAGTCACA  350

seq1  GTAGCGACCACACCTACTATGAAACCCTGGGCTCCATGAACAAGGACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCGACCACACCTACTATGAAACCCTGGGCTCCATGAACAAGGACATT  400

seq1  CATTTAGTTTCATCATTTTTCCTGTTACCTAGTCCAGGTTGCATTTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGTTTCATCATTTTTCCTGTTACCTAGTCCAGGTTGCATTTGTGG  450

seq1  CATTCACAATGAAAGTACTGCAAACAATATACAGCCTTCTTGCCTGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACAATGAAAGTACTGCAAACAATATACAGCCTTCTTGCCTGTCTT  500

seq1  TGGATTTTGTTCTTTTTGTTTTTCAGGTCACTGTTCTGGCACAACTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTGTTCTTTTTGTTTTTCAGGTCACTGTTCTGGCACAACTTCTC  550

seq1  CACCCAAGTCCCCACGACAGCAGATAAAAGACTGAATAGAGATGACAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAGTCCCCACGACAGCAGATAAAAGACTGAATAGAGATGACAGTA  600

seq1  TTTTACTGTTACAAGACACACACACACAAAAACTTACTTGACTCCCCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGTTACAAGACACACACACACAAAAACTTACTTGACTCCCCTGT  650

seq1  CATTTGTCTCTTGGACTTGTGTTCTGTTGCGATCATGGTTACACGTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCTCTTGGACTTGTGTTCTGTTGCGATCATGGTTACACGTGAGG  700

seq1  AAGTATTAGTTCATAAAGTTCAGGTGCTTTGTCCAATATTAACAGCTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTAGTTCATAAAGTTCAGGTGCTTTGTCCAATATTAACAGCTAGA  750

seq1  AAGCAGCTGTAGTGAGATTTTCATCCTGGACTGACTGACACCCAAACCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTGTAGTGAGATTTTCATCCTGGACTGACTGACACCCAAACCTA  800

seq1  ACTTTGTTACACTGACCAAATCCTCACTTAAGAAATGAAATTATTACTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTACACTGACCAAATCCTCACTTAAGAAATGAAATTATTACTGG  850

seq1  CTGTTGTTTTTAAGTGTTCTTGACCAAGTTTTCTCCCCACTGTCTATATC  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGTTGTTTTTAAGTGTTCTTGACCAAGTTTTCT-CCCACTGTCTATATC  899

seq1  TCCACAGCTGCTGAATTCTCTCAGCTACCCACTGTAGTTCCCCCTTCACA  950
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  TCCACAGCTGCTGAATTCTCTCAGCTACTCACTGTAGTT-CCCCTTCACA  948

seq1  GCTCTCAAATGAGATTATTGATCTCCTCCAGTGTCTGAAAATCATTTTAA  1000
      |||||||||||||||   |||||||   ||||||||| |||||||||  |
seq2  GCTCTCAAATGAGAT--ATGATCTC--TCAGTGTCTG-AAATCATTT--A  991

seq1  TAATGAGAAATGTTCAGATTGGCATTTCAGACTTTTTGTGCTAAGTTTTA  1050
      | ||||| |||||||||||||||| |||||||||||||||||| |  |||
seq2  T-ATGAG-AATGTTCAGATTGGCA-TTCAGACTTTTTGTGCTAGG--TTA  1036

seq1  GAACTCTTCTTAGTCCCCCCAGCAGGAGGCATGAACAGAAGTATGGGGTG  1100
      || || ||| ||||||| |||||||||| ||||||||||   || |||| 
seq2  GACCT-TTC-TAGTCCCTCCAGCAGGAGCCATGAACAGA--GATAGGGT-  1081

seq1  AGTTACAGATGTGTGCTTACATGGTGAGGATACAGGGTGCGTTACAGGAT  1150
      ||||   ||| ||||| |||||||||| ||||| ||    |||||||   
seq2  AGTT--CGAT-TGTGC-TACATGGTGA-GATACGGG----GTTACAG---  1119

seq1  TATTTTGAGCC  1161
         ||||||||
seq2  --ATTTGAGCC  1128