BAC Information

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BAC

Clone NameB6Ng01-029H15
Chromosome1 (Build37)
Map Location 95,545,404 - 95,689,633
singlet/doubletdoublet
Overlap geneBok, Thap4, Atg4b
Upstream geneOtos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25
Downstream geneDtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029H15.bB6Ng01-029H15.g
ACCDH859670DH859671
length1,043479
definitionDH859670|Mus musculus domesticus DNA, BAC clone: B6Ng01-029H15, 5' end.DH859671|Mus musculus domesticus DNA, BAC clone: B6Ng01-029H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,688,589 - 95,689,633)(95,545,404 - 95,545,888)
sequence
gaattcaggttggcttttgcagagccctggctcacctgatgtcaccacat
gcactgggaatagaaggacgtggtacagtgatcctttttctgctgtctcc
cctgtggtgataggtggttgatgcttccaaaagcattgaggaagtccata
aagaaatccgtgcacactctgaggacgccatccgaaacgctgcacagagg
ccactgggggagctatggaaataaatcagcttccattgccaatacaattt
tctggttctgcaagagactggtagaaggctcacatctctacactattcag
caggagctagttctcagcagaagagatctacaagacccctctcataacct
gagatttaagttgtgcagtatctctctttacctactgcttggctgtaaag
gtgtagcagtttccttgagatcaattggtgagaaatcacattttttttac
agaataaaaatttacccaaaaatatatctcacgagctttggttctgcccc
tatttatggtccttccaccatggatttgatcagttattaggtcccatgtt
ccaagcctgtgttcttgggtgttatctagtggcacagtgctcataattct
aagcccagtgataatgaccttgttggctgttagtgctacaggggcctttt
acactatcccctctgccacacccactccaaggaagtctgtggggcaagcc
caaaagcttggatgcagtcctgaggcaaaaagtttcacagacttagtctc
ctggactcttggcatcccatactatgaatgctccaaacttgtccctacat
cagtccgtgaatggatctgtgtggtttccttcaatattgttttgaaagat
tctgacagaagtcaccgaagccctgaaattggcaagatagatttcactgt
tagcagaactagcaacactgatttagaaaaatagagtgcacaatgctctg
gccactccttgaacccatgtgtgtgcccactgatgaagcccattgccagg
tgtttgtgatattggttgctgggatagagtcaaaaattctccc
tctgtgtagaccaggctggcctcgaactcagagatccacctgcctcctga
gtgcagagattagagccctgtaccgccaccacctggctgatcttccagtc
ttacctggaaaagcaaagagaagggaagtgggaccaagcgggaggcgtgg
agccagggaagcctcctggaggttttagtgccacagaatggctggagccc
ttcgttctgaaccaccaagaacataggtggccatgcaagctgtgcctccg
cctccgccacagccacagccgggcatgtcaaaggatgagagacacggcac
tgggatagtaagaatttctgagggttggaagggtcagaagaggactcatc
tgacagtgtgcttaccatgaagacctgagttcagatgccccgcacccaca
tgcaagtcaggaaaggcagagcagttctgtagtcctggtgctgggagaca
gagaccggcgggggtggggttggggttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_95688589_95689633
seq2: B6Ng01-029H15.b_37_1079 (reverse)

seq1  GGGAGATTTTCTGACTCTATCCCAGCAACCAATATCACAAACACCTGGCA  50
      |||||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAATTTTTGACTCTATCCCAGCAACCAATATCACAAACACCTGGCA  50

seq1  ATGGGCTTCATCAGTGGGCACACACATGGGTTCAAGGAGTGGCCAGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTTCATCAGTGGGCACACACATGGGTTCAAGGAGTGGCCAGAGCA  100

seq1  TTGTGCACCTCTATTTTTCTAAATCAGTGTTGCTAGTTCTGCTAACAGTG  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCA-CTCTATTTTTCTAAATCAGTGTTGCTAGTTCTGCTAACAGTG  149

seq1  AAATCTATCTTGCCAATTTCAGGGCTTCGGTGACCTTCTGTCAGAATCTT  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAATCTATCTTGCCAATTTCAGGGCTTCGGTGA-CTTCTGTCAGAATCTT  198

seq1  TCAAAACAATATTGAAGGAAACCACACAGATCCATTCACGGACTGATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACAATATTGAAGGAAACCACACAGATCCATTCACGGACTGATGTA  248

seq1  GGGACAAGTTTGGAGCATTCATAGTATGGGATGCCAAGAGTCCAGGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAGTTTGGAGCATTCATAGTATGGGATGCCAAGAGTCCAGGAGAC  298

seq1  TAAGTCTGTGAAACTTTTTGCCTCAGGACTGCATCCAAGCTTTTGGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTGTGAAACTTTTTGCCTCAGGACTGCATCCAAGCTTTTGGGCTT  348

seq1  GCCCCACAGACTTCCTTGGAGTGGGTGTGGCAGAGGGGATAGTGTAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACAGACTTCCTTGGAGTGGGTGTGGCAGAGGGGATAGTGTAAAAG  398

seq1  GCCCCTGTAGCACTAACAGCCAACAAGGTCATTATCACTGGGCTTAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGTAGCACTAACAGCCAACAAGGTCATTATCACTGGGCTTAGAAT  448

seq1  TATGAGCACTGTGCCACTAGATAACACCCAAGAACACAGGCTTGGAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCACTGTGCCACTAGATAACACCCAAGAACACAGGCTTGGAACAT  498

seq1  GGGACCTAATAACTGATCAAATCCATGGTGGAAGGACCATAAATAGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTAATAACTGATCAAATCCATGGTGGAAGGACCATAAATAGGGGC  548

seq1  AGAACCAAAGCTCGTGAGATATATTTTTGGGTAAATTTTTATTCTGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAAAGCTCGTGAGATATATTTTTGGGTAAATTTTTATTCTGTAAA  598

seq1  AAAAATGTGATTTCTCACCAATTGATCTCAAGGAAACTGCTACACCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTGATTTCTCACCAATTGATCTCAAGGAAACTGCTACACCTTTA  648

seq1  CAGCCAAGCAGTAGGTAAAGAGAGATACTGCACAACTTAAATCTCAGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAGCAGTAGGTAAAGAGAGATACTGCACAACTTAAATCTCAGGTT  698

seq1  ATGAGAGGGGTCTTGTAGATCTCTTCTGCTGAGAACTAGCTCCTGCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGGGGTCTTGTAGATCTCTTCTGCTGAGAACTAGCTCCTGCTGAA  748

seq1  TAGTGTAGAGATGTGAGCCTTCTACCAGTCTCTTGCAGAACCAGAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTAGAGATGTGAGCCTTCTACCAGTCTCTTGCAGAACCAGAAAATT  798

seq1  GTATTGGCAATGGAAGCTGATTTATTTCCATAGCTCCCCCAGTGGCCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGCAATGGAAGCTGATTTATTTCCATAGCTCCCCCAGTGGCCTCT  848

seq1  GTGCAGCGTTTCGGATGGCGTCCTCAGAGTGTGCACGGATTTCTTTATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCGTTTCGGATGGCGTCCTCAGAGTGTGCACGGATTTCTTTATGG  898

seq1  ACTTCCTCAATGCTTTTGGAAGCATCAACCACCTATCACCACAGGGGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCAATGCTTTTGGAAGCATCAACCACCTATCACCACAGGGGAGA  948

seq1  CAGCAGAAAAAGGATCACTGTACCACGTCCTTCTATTCCCAGTGCATGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAAAAAGGATCACTGTACCACGTCCTTCTATTCCCAGTGCATGTG  998

seq1  GTGACATCAGGTGAGCCAGGGCTCTGCAAAAGCCAACCTGAATTC  1045
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCAGGTGAGCCAGGGCTCTGCAAAAGCCAACCTGAATTC  1043

seq1: chr1_95545404_95545888
seq2: B6Ng01-029H15.g_68_552

seq1  GAATTCTCTGTGTAGACCAGGCTGGCCTCGAACTCAGAGATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGTAGACCAGGCTGGCCTCGAACTCAGAGATCCACCTGCC  50

seq1  TCCTGAGTGCAGAGATTAGAGCCCTGTACCGCCACCACCTGGCTGATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTGCAGAGATTAGAGCCCTGTACCGCCACCACCTGGCTGATCTT  100

seq1  CCAGTCTTACCTGGAAAAGCAAAGAGAAGGGAAGTGGGACCAAGCGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTTACCTGGAAAAGCAAAGAGAAGGGAAGTGGGACCAAGCGGGAG  150

seq1  GCGTGGAGCCAGGGAAGCCTCCTGGAGGTTTTAGTGCCACAGAATGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGAGCCAGGGAAGCCTCCTGGAGGTTTTAGTGCCACAGAATGGCTG  200

seq1  GAGCCCTTCGTTCTGAACCACCAAGAACATAGGTGGCCATGCAAGCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTTCGTTCTGAACCACCAAGAACATAGGTGGCCATGCAAGCTGTG  250

seq1  CCTCCGCCTCCGCCACAGCCACAGCCGGGCATGTCAAAGGATGAGAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGCCTCCGCCACAGCCACAGCCGGGCATGTCAAAGGATGAGAGACA  300

seq1  CGGCACTGGGATAGTAAGAATTTCTGAGGGTTGGAAGGGTCAGAAGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCACTGGGATAGTAAGAATTTCTGAGGGTTGGAAGGGTCAGAAGAGGA  350

seq1  CTCATCTGACAGTGTGCTTACCATGAAGACCTGAGTTCAGATGCCCCGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGACAGTGTGCTTACCATGAAGACCTGAGTTCAGATGCCCCGCA  400

seq1  CCCACATGCAAGTCAGGAAAGGCAGAGCAGTTCTGTAGTCCTGGTGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATGCAAGTCAGGAAAGGCAGAGCAGTTCTGTAGTCCTGGTGCTGG  450

seq1  GAGACAGAGACCGGCGGGGGTGGGGTTGGGGTTGG  485
      |||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGACCGGCGGGGGTGGGGTTGGGGTTGG  485