BAC Information

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BAC

Clone NameB6Ng01-029J06
Chromosome1 (Build37)
Map Location 88,847,323 - 88,848,101
singlet/doubletsinglet
Overlap gene4930429A22Rik
Upstream geneGpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, EG620213
Downstream geneLOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029J06.bB6Ng01-029J06.g
ACCDH859742DH859743
length1,256786
definitionDH859742|Mus musculus domesticus DNA, BAC clone: B6Ng01-029J06, 5' end.DH859743|Mus musculus domesticus DNA, BAC clone: B6Ng01-029J06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccagaccttcaaagaagatctaataacagtactcttcaaact
attctacaaaatagaaacagaaggaactccacctgattcattctatgaag
ccaaagttactctgatacctaaaccacacaaagtcccaacaaagaacgag
aacttcagaccaattttgcttatgaatattgatgtaaaaatactcaaaat
tcttgaaaacaaaatgcaagaacacatcaaaaacatcatccatcatgatc
aagtaggctttatcccaggggatgcagggatggttcaatatatgaaaatg
catcaatgtaatccactatataaaaaatgcaaagaaaaagtcacatgatc
atctcattagatgctgaaagagcctttgacaaaatacaacactccttcat
gttaaaagtcttagagaaatcaggaattcatggcacatacaaaaaacaaa
gactattaatatctccctgttgtcatttctcagcatggagtatacccaaa
gtatatctttgggtttgatattgctagaatgcttgacttaaaaaaaattg
ttctttgagttttaaaaaaaaattaaatgaatttttcttgggattagtcc
ataattgtctccagtttttatattgcctttaaacgtattttaccatttta
taatatatattgctgagaagtagtgtattatataactagtattaatattt
atctcagtattagtaattataagatcaaaacattgatcaactgtgaaaaa
atattgaagttttatgtattttattagtatgtcctgtagcatctaagcat
ctaatattcagctgacttaattctttctataaaataaatatgcccatatc
aaagctttaataaaggataatgttatatgaatacctgacaatttctaaaa
aataaatttcatgccatgtgtgatggtatcagtttataatcctagcactc
tggaggctccagcaagctggttgttgcaagtttgagggcagcttggacta
catagtgggttcagtcagcttggctatgagtgaaattggtgtttcaaaaa
actgagaaaagaaaatgctttattgacatttactagtattgttattttaa
catcatcttgtactaagggtcattgaatgtgttgagtgaagacatgcaaa
agaaaagcctgaaacctgacttggctccatttcgctgttggggattggtc
aatggcagtgccagaacggacctggcttgcgatctttatgagaaattcat
tacagt
gaattcctgatcctcctacctcaagactcacaaaggcctgggattacagg
catgctccatcacactcagccttttgtagatttttttttctatttttttc
tattaagaatatataattattagtttctaaaagcaaaatttaaaagacac
ataattttatatatctcaaagaatatatgtatatttaaatgtctaggtac
tatatgttaactgtaattatctactgattaataaagtcttcctttcactt
gaaattaaaatttttgtttctcacttcaaattctgagaggcaaaagttca
tcactttatatcttagtgataaaaacttggaagggctctcattactcttt
ggggcgaggggctatttctagtaatgttaaatagctctcttttcagtcta
attactcaattttactcattcattcatttctttgcatgagggagaaacca
ttttctggcttttcagaagtagacaaagacaaaaaattatactcaattta
taaatgcaaaggatataaatctgctacaggaatagcatagcaactattct
ctctctctcttcccccctctctctgtgtgtatgtgtgtgtgtgtgtgtgt
atgtatgtgcacacatgtgtgcatgacaaaccctttcttctaaaagttac
cttttgctatggtattttatcacagcaataggcagtctagttttataaaa
tctttttttttttcttttttttgagatgggggtttcctgggggacctggt
ttgctttggtctcccaagggctaagattaaaggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88847323_88848101
seq2: B6Ng01-029J06.g_69_854 (reverse)

seq1  ATGCCTTTAATCCTAGCCC-TGGGAGACCAAGGC-AACCAGGT-CCCCAG  47
      |||||||||||| |||||| ||||||||||| || |||||||| ||||||
seq2  ATGCCTTTAATCTTAGCCCTTGGGAGACCAAAGCAAACCAGGTCCCCCAG  50

seq1  GAAACCCCCATCTCAAAAAAAAG-AAAAAAAAAAGA-TTTAT-AAACTAG  94
      ||||||||||||||||||||||| |||||||||||| ||||| |||||||
seq2  GAAACCCCCATCTCAAAAAAAAGAAAAAAAAAAAGATTTTATAAAACTAG  100

seq1  ACTGCCTATTGCTGTGATAAAATACCATAGC-AAAGGTAACTTTTAGAAG  143
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTGCCTATTGCTGTGATAAAATACCATAGCAAAAGGTAACTTTTAGAAG  150

seq1  AAAGGGTTTGTCATGCACACATGTGTGCACATACATACACACACACACAC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTTTGTCATGCACACATGTGTGCACATACATACACACACACACAC  200

seq1  ACACATACACACAGAGAGAGGGGGGAAGAGAGAGAGAGAATAGTTGCTAT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACACACAGAGAGAGGGGGGAAGAGAGAGAGAGAATAGTTGCTAT  250

seq1  GCTATTCCTGTAGCAGATTTATATCCTTTGCATTTATAAATTGAGTATAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCCTGTAGCAGATTTATATCCTTTGCATTTATAAATTGAGTATAA  300

seq1  TTTTTTGTCTTTGTCTACTTCTGAAAAGCCAGAAAATGGTTTCTCCCTCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTCTTTGTCTACTTCTGAAAAGCCAGAAAATGGTTTCTCCCTCA  350

seq1  TGCAAAGAAATGAATGAATGAGTAAAATTGAGTAATTAGACTGAAAAGAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGAAATGAATGAATGAGTAAAATTGAGTAATTAGACTGAAAAGAG  400

seq1  AGCTATTTAACATTACTAGAAATAGCCCCTCGCCCCAAAGAGTAATGAGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTAACATTACTAGAAATAGCCCCTCGCCCCAAAGAGTAATGAGA  450

seq1  GCCCTTCCAAGTTTTTATCACTAAGATATAAAGTGATGAACTTTTGCCTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCCAAGTTTTTATCACTAAGATATAAAGTGATGAACTTTTGCCTC  500

seq1  TCAGAATTTGAAGTGAGAAACAAAAATTTTAATTTCAAGTGAAAGGAAGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTTGAAGTGAGAAACAAAAATTTTAATTTCAAGTGAAAGGAAGA  550

seq1  CTTTATTAATCAGTAGATAATTACAGTTAACATATAGTACCTAGACATTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTAATCAGTAGATAATTACAGTTAACATATAGTACCTAGACATTT  600

seq1  AAATATACATATATTCTTTGAGATATATAAAATTATGTGTCTTTTAAATT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACATATATTCTTTGAGATATATAAAATTATGTGTCTTTTAAATT  650

seq1  TTGCTTTTAGAAACTAATAATTATATATTCTTAATAGAAAAAAATAGAAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTAGAAACTAATAATTATATATTCTTAATAGAAAAAAATAGAAA  700

seq1  AAAAAATCTACAAAAGGCTGAGTGTGATGGAGCATGCCTGTAATCCCAGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCTACAAAAGGCTGAGTGTGATGGAGCATGCCTGTAATCCCAGG  750

seq1  CCTTTGTGAGTCTTGAGGTAGGAGGATCAGGAATTC  779
      ||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGAGTCTTGAGGTAGGAGGATCAGGAATTC  786