BAC Information

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BAC

Clone NameB6Ng01-030M20
Chromosome1 (Build37)
Map Location 94,004,523 - 94,147,525
singlet/doubletdoublet
Overlap geneHdac4
Upstream geneLrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2
Downstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030M20.bB6Ng01-030M20.g
ACCDH860596DH860597
length1,209989
definitionDH860596|Mus musculus domesticus DNA, BAC clone: B6Ng01-030M20, 5' end.DH860597|Mus musculus domesticus DNA, BAC clone: B6Ng01-030M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,004,523 - 94,005,743)(94,146,540 - 94,147,525)
sequence
gaattcacagtgatgctcctgcttcaacctcccaagtactgacttatttc
tttgtgacgcaaagcaagaaaggcatcttcagctgccaccatgctcctgg
atgtgtttactggacatccattagaagccttacaaaactactaacatcaa
ggagggtgtgtctaagcctgagggcaccagcctttcctaggcctctcagt
ctttcactgaggagtcaagagtgacaccctagccaaaaatcaccactgcc
aaatcagccagtaaacaccccgaactccagcttcccttcattcctattgg
atcctgaggctggaacccaaaacctgaattctgcttggacaagagtttgc
ccaaagagagtgtgtgatagacatgcagtggtcaaaacctagaccagtgt
cagccaaaggaagcagcagaggcttccatggaagtttgaacaagttcact
tcaaagtcaaaagcaaagcaaaattagcagcaacctcatctggcttctca
aatcaaagtggctaagtaatcttcctaggccaatcataaggtctgccaag
ctaggaaagaagagcagagctggttaaagagagccgccattcttcctcac
ccaccatggcttaggcagaagcaggtatggacaggagcagcttctcccac
aaaggaggagaattcaggaggtagcattcccagtgtcccacggttctcag
caggtatttccctctttccagctacaaagtagaagaaatcaagtaacttg
gtgacagtgtgcagacatggctctgctccaagcaagcccttgctgcaaga
ctgctagtaaagagcacagcactattttgtcttcccccagcctcagcctg
ttctgtgtaggcacagtcactgagtggcagtcaaggcatcatcttgtcac
ttatctctccagccctgtcccaaagactagcttcaagtcccgtatcaagt
cctacctataaactgaaaagaccagcagtactctagaaatgaactgtggc
ctgaatttccagcgtcctatctaaatcttcatcagtggaccccaacaata
agttagccttatgataaatgagacagaaactcaaacaagcctcagctaca
aatgctgcttctgtgtgccgtggcgtgtgtcaacagagacaaaactcatg
gttgcttgataacttttattccctacgtggagaccatgatagtcctgaac
tacaaggag
gaattctaagtacttggctttcaaatgctaggacatggaccagctcggcc
acgggccgaggggtctggagtagcctgctggttccctgcaacgtagacca
caggtgcttggaaactactctagcaggagaatgatggaactgctattgct
gccttccttgctgagccagacatagccagggacacgcggcaggcatccca
gtacccagcagccacagcctgccaaccaactgtccccagccttcacccag
ttccaggagcaggccatcccacctgggcaacagtgagactcagttctgag
gctgggactcagaatgagggctatactgctgctatgcctccttctcagat
cctgccttccgggtagacacctgctcttgacccttcccctcctgatgctt
tccactggtgtagcagtaagctgcgtgaatgctgagcctggtcacctcca
cccctttcctctaacactgccaatgcacagtgaataagccagggtgccct
gagagaggccagcccctgcctcaggaccctggaggaaagcctctggcaat
ccatcagtccacgctcccgttttaccattgggggtgggggtccagctgtg
agccaggcagatggtctatgcccacaatggctagaattctggaagagaga
caaagtctttctcatacaggagaaggaccactacactagcagcttggcct
gtttctttttgatgctggtcttggcccctcctgcacctcagcttaaatca
gtccttctcaatgcaaacctttgagttggccttaatggggtcagatccca
gaggaagtggccagttacaactactctaggtatattcttggcagaggctt
gggtctcccaagtgttctaagtatgggtttatactaataaaagcctgtct
ttgtcagaaagagaaaaggcaagatggtagctatgttggcctctcagggc
tgttctggcagcagatccctcggtgtctcaaccaatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_94004523_94005743
seq2: B6Ng01-030M20.b_45_1253

seq1  GAATTCACAGTGATGCTCCTGCTTCAACCTCCCAAGTACTGACTTATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTGATGCTCCTGCTTCAACCTCCCAAGTACTGACTTATTTC  50

seq1  TTTGTGACGCAAAGCAAGAAAGGCATCTTCAGCTGCCACCATGCTCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACGCAAAGCAAGAAAGGCATCTTCAGCTGCCACCATGCTCCTGG  100

seq1  ATGTGTTTACTGGACATCCATTAGAAGCCTTACAAAACTACTAACATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTACTGGACATCCATTAGAAGCCTTACAAAACTACTAACATCAA  150

seq1  GGAGGGTGTGTCTAAGCCTGAGGGCACCAGCCTTTCCTAGGCCTCTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTGTGTCTAAGCCTGAGGGCACCAGCCTTTCCTAGGCCTCTCAGT  200

seq1  CTTTCACTGAGGAGTCAAGAGTGACACCCTAGCCAAAAATCACCACTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTGAGGAGTCAAGAGTGACACCCTAGCCAAAAATCACCACTGCC  250

seq1  AAATCAGCCAGTAAACACCCCGAACTCCAGCTTCCCTTCATTCCTATTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCCAGTAAACACCCCGAACTCCAGCTTCCCTTCATTCCTATTGG  300

seq1  ATCCTGAGGCTGGAACCCAAAACCTGAATTCTGCTTGGACAAGAGTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAGGCTGGAACCCAAAACCTGAATTCTGCTTGGACAAGAGTTTGC  350

seq1  CCAAAGAGAGTGTGTGATAGACATGCAGTGGTCAAAACCTAGACCAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAGAGTGTGTGATAGACATGCAGTGGTCAAAACCTAGACCAGTGT  400

seq1  CAGCCAAAGGAAGCAGCAGAGGCTTCCATGGAAGTTTGAACAAGTTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAAGGAAGCAGCAGAGGCTTCCATGGAAGTTTGAACAAGTTCACT  450

seq1  TCAAAGTCAAAAGCAAAGCAAAATTAGCAGCAACCTCATCTGGCTTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCAAAAGCAAAGCAAAATTAGCAGCAACCTCATCTGGCTTCTCA  500

seq1  AATCAAAGTGGCTAAGTAATCTTCCTAGGCCAATCATAAGGTCTGCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGTGGCTAAGTAATCTTCCTAGGCCAATCATAAGGTCTGCCAAG  550

seq1  CTAGGAAAGAAGAGCAGAGCTGGTTAAAGAGAGCCGCCATTCTTCCTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAAGAAGAGCAGAGCTGGTTAAAGAGAGCCGCCATTCTTCCTCAC  600

seq1  CCACCATGGCTTAGGCAGAAGCAGGTATGGACAGGAGCAGCTTCTCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGGCTTAGGCAGAAGCAGGTATGGACAGGAGCAGCTTCTCCCAC  650

seq1  AAAGGAGGAGAATTCAGGAGGTAGCATTCCCAGTGTCCCACGGTTCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGGAGAATTCAGGAGGTAGCATTCCCAGTGTCCCACGGTTCTCAG  700

seq1  CAGGTATTTCCCTCTTTCCAGCTACAAAGTAGAAGAAATCAAGTAACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATTTCCCTCTTTCCAGCTACAAAGTAGAAGAAATCAAGTAACTTG  750

seq1  GTGACAGTGTGCAGACATGGCTCTGCTCCAAGCAAGCCCTTGCTGCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGTGTGCAGACATGGCTCTGCTCCAAGCAAGCCCTTGCTGCAAGA  800

seq1  CTGCTAGTAAAGAGCACAGCACTATTTTGTCTTCCCCCAGCCTCAGCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGTAAAGAGCACAGCACTATTTTGTCTTCCCCCAGCCTCAGCCTG  850

seq1  TTCTGTGTAGGCACAGTCACTGAGTGGCAGTCAAGGCATCATCTTGTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCTGTGTAGGCACAGTCACTGAGTGGCAGTCAAGGCATCATCTTGT-CA  899

seq1  CTTATCTCTCCCAGCCCTGTCCCAAAGACTAGCTTCTAGGTCCCGTATCA  950
      ||||||||| |||||||||||||||||||||||||| | |||||||||||
seq2  CTTATCTCT-CCAGCCCTGTCCCAAAGACTAGCTTC-AAGTCCCGTATCA  947

seq1  GGTCCTACCTATAAACTTGAAAGACCAGCAGGTACTCTAGAAATGAACTG  1000
       ||||||||||||||||  ||||||||||| |||||||||||||||||||
seq2  AGTCCTACCTATAAACTGAAAAGACCAGCA-GTACTCTAGAAATGAACTG  996

seq1  TGG-CTGCATTTCCAGCGTCCTATCTACATCTACATCAGTGGACCCCAAC  1049
      ||| ||| ||||||||||||||||||| |||| |||||||||||||||| 
seq2  TGGCCTGAATTTCCAGCGTCCTATCTAAATCTTCATCAGTGGACCCCAA-  1045

seq1  CAGTAGTTTAGCCTTATGTATAAAATGAAGACAGAAAACTCAAACAAGCC  1099
      || ||  ||||||||||| || ||||| |||||| ||||||||||||| |
seq2  CAATAAGTTAGCCTTATG-AT-AAATG-AGACAG-AAACTCAAACAAG-C  1090

seq1  CTCAGCTAC-AATGCTGCTTCTGTGTGCGTGTGCGTGTGTGTCACACAGG  1148
      ||||||||| ||||||||||||||||||  ||| | |||||||| |||| 
seq2  CTCAGCTACAAATGCTGCTTCTGTGTGC-CGTG-GCGTGTGTCA-ACAGA  1137

seq1  AGCAAAAC---TTGTTGC-TGATAACTTTTATTCCCTACTTGAAGGACCA  1194
        ||||||   | ||||| |||||||||||||||||||| || | |||  
seq2  GACAAAACTCATGGTTGCTTGATAACTTTTATTCCCTACGTGGA-GAC--  1184

seq1  CATAAAATAAGCCCTG-ACTACAAGGAG  1221
      ||| |    || |||| |||||||||||
seq2  CATGA---TAGTCCTGAACTACAAGGAG  1209

seq1: chr1_94146540_94147525
seq2: B6Ng01-030M20.g_69_1057 (reverse)

seq1  TCCACTGGTTGAGACACCGAGGGATCTGGCTGCCAGAACAGCCACTGAGA  50
      |||| |||||||||||||||||||||| ||||||||||||||| ||||||
seq2  TCCATTGGTTGAGACACCGAGGGATCT-GCTGCCAGAACAGCC-CTGAGA  48

seq1  GG-CAACATAGCTACCATCTTGCCTTTTCTCTTTCTGACAAAAGACAGGC  99
      || |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGCCAACATAGCTACCATCTTGCCTTTTCTCTTTCTGAC-AAAGACAGGC  97

seq1  TTTTATTAGTATACACCCATACTTAG-ACACCTGGGAGACC--AGCCTCT  146
      ||||||||||||| |||||||||||| |||| |||||||||  |||||||
seq2  TTTTATTAGTATAAACCCATACTTAGAACACTTGGGAGACCCAAGCCTCT  147

seq1  GCC-AGAATATACCTAGAGTAGTTGT-ACTGGCCACTTCCTCTGGGATCT  194
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCCAAGAATATACCTAGAGTAGTTGTAACTGGCCACTTCCTCTGGGATCT  197

seq1  GACCCCCATTAAGGCCAACTCAAAGGTTTGCATTGAGAAGGACTGATTTA  244
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-CCCCATTAAGGCCAACTCAAAGGTTTGCATTGAGAAGGACTGATTTA  246

seq1  AGCTGAGGTGCAGGAGGGGCCAAGACCAGCATCAAAAAG-AACAGGCCAA  293
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCTGAGGTGCAGGAGGGGCCAAGACCAGCATCAAAAAGAAACAGGCCAA  296

seq1  GCTGCTAGTGTAGTGGTCCTTCTCCTGTATGAGAAAGACTTTGTCTCTCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTAGTGTAGTGGTCCTTCTCCTGTATGAGAAAGACTTTGTCTCTCT  346

seq1  TCCAGAATTCTAGCCATTGTGGGCATAGACCATCTGCCTGGCTCACAGCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAATTCTAGCCATTGTGGGCATAGACCATCTGCCTGGCTCACAGCT  396

seq1  GGACCCCCACCCCCAATGGTAAAACGGGAGCGTGGACTGATGGATTGCCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCCACCCCCAATGGTAAAACGGGAGCGTGGACTGATGGATTGCCA  446

seq1  GAGGCTTTCCTCCAGGGTCCTGAGGCAGGGGCTGGCCTCTCTCAGGGCAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTTCCTCCAGGGTCCTGAGGCAGGGGCTGGCCTCTCTCAGGGCAC  496

seq1  CCTGGCTTATTCACTGTGCATTGGCAGTGTTAGAGGAAAGGGGTGGAGGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTATTCACTGTGCATTGGCAGTGTTAGAGGAAAGGGGTGGAGGT  546

seq1  GACCAGGCTCAGCATTCACGCAGCTTACTGCTACACCAGTGGAAAGCATC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTCAGCATTCACGCAGCTTACTGCTACACCAGTGGAAAGCATC  596

seq1  AGGAGGGGAAGGGTCAAGAGCAGGTGTCTACCCGGAAGGCAGGATCTGAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGAAGGGTCAAGAGCAGGTGTCTACCCGGAAGGCAGGATCTGAG  646

seq1  AAGGAGGCATAGCAGCAGTATAGCCCTCATTCTGAGTCCCAGCCTCAGAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGCATAGCAGCAGTATAGCCCTCATTCTGAGTCCCAGCCTCAGAA  696

seq1  CTGAGTCTCACTGTTGCCCAGGTGGGATGGCCTGCTCCTGGAACTGGGTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCTCACTGTTGCCCAGGTGGGATGGCCTGCTCCTGGAACTGGGTG  746

seq1  AAGGCTGGGGACAGTTGGTTGGCAGGCTGTGGCTGCTGGGTACTGGGATG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGGGGACAGTTGGTTGGCAGGCTGTGGCTGCTGGGTACTGGGATG  796

seq1  CCTGCCGCGTGTCCCTGGCTATGTCTGGCTCAGCAAGGAAGGCAGCAATA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCGCGTGTCCCTGGCTATGTCTGGCTCAGCAAGGAAGGCAGCAATA  846

seq1  GCAGTTCCATCATTCTCCTGCTAGAGTAGTTTCCAAGCACCTGTGGTCTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCCATCATTCTCCTGCTAGAGTAGTTTCCAAGCACCTGTGGTCTA  896

seq1  CGTTGCAGGGAACCAGCAGGCTACTCCAGACCCCTCGGCCCGTGGCCGAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGCAGGGAACCAGCAGGCTACTCCAGACCCCTCGGCCCGTGGCCGAG  946

seq1  CTGGTCCATGTCCTAGCATTTGAAAGCCAAGTACTTAGAATTC  986
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCATGTCCTAGCATTTGAAAGCCAAGTACTTAGAATTC  989