BAC Information

Click to search

BAC

Clone NameB6Ng01-031A05
Chromosome1 (Build37)
Map Location 24,274,761 - 24,275,801
singlet/doubletsinglet
Overlap geneCol19a1
Upstream geneEG623356, Ogfrl1, LOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1
Downstream geneLOC100040475, LOC665829, Lmbrd1, 4930472D16Rik, LOC669171, Bai3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031A05.bB6Ng01-031A05.g
ACCDH860747DH860748
length1,0221,032
definitionDH860747|Mus musculus domesticus DNA, BAC clone: B6Ng01-031A05, 5' end.DH860748|Mus musculus domesticus DNA, BAC clone: B6Ng01-031A05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatgctttaagaccatttggctctgggcttttattggtttagag
aattttaatgacgacttctatttcactgggggttataattttgtttaaat
tgcttatcttatcttgatttaactttggtaagtagtctatatggagaaaa
ttacccccttcttttagatttttcaattgatggagtatacgtgttaaagc
atgtccttatgattctagggattttcttattatctgtttttatatccccc
atttttctctaattttgttaatttgtatattctttctcctctttgtggtt
aattggataaggggtgtgttagtcttactaatattctcaaagaatcacct
ttttgtttcatgggcttttttattggtttgtggattttgtttctatttta
ttgatttcagacccaagtttgtatattttgttttttatcatctattcctt
tagggtgtgatttctcgcattcgttctagagcttccaggtgtgctgttaa
gttacaagtacaaaatggctccaatttctttatatatgcactagtgctat
gaatttgccttttagaactgccttcatgtgtcccacaagcttgagtatgt
tgtatattcattctcactcaattctagagaatcactactttcattagtag
tgtcttggcacatttatttcagtcatccgtgagtttgcttcaatttctgt
aatcttgtaagcttctgctgtttccctttgtcgatgatgatatccagctt
taatccatggtggtctgataggatgcaaaatgttatgccaattttcttac
acttgttatgccatacactgggtctgagtatatgttcagttttggagaaa
gttccatacagtgctgaaaagaagtatattttatgtttgggtgaaatgtt
cagtggatgtccttaattccctgtgagttatgatggcagttagatccaca
tctctttgtgttagttatgttggaatgatctgctattgtggaaatcagtt
cacaactccctaacgagattcg
gaattccttcaaacttaagaatcacacctcagatctctcttataaacaat
agtctgtattgcacacatagcagtgggttaaccccacagaaatccattgc
aaaggggggaaggtcatgttttgatcagttgactcagtagcaaatataaa
ccttgtttttcaaagacctcactaatattgttgacttggtattgcctctg
actgagaacctttgtgatggacctccaaggcttgggatgatacctggagc
taggggcttatgtgggaaggtgactctgctctaaactctgttttaccacg
tcactgcaactttgcattttgtgtattctcttggactactgagatctgaa
ggatccatccatcgtttttttacttgaatcagcagggcttattcttcatg
tggttagagcgtcacatcttcagatggcttttaaaggcctttccagttct
caggccccctgacttcagaggagatccaatgaataaaaggtaataagcac
cttctgcacgggtgtatacatgcaccttctgcacgggtgtatacacgcac
cttctgcacgggcgtatacacacacctgcacaggtgtatacacacacctt
ctgaacgggtgtatacatgcaccttctgcacgggtgtatacacgcacctt
ctgcacgggcgtatacacacacctgcacaggtgtatacacacaccttctg
cacaggtgtatacatgcaccttctgcacaggtgtatatacacaccttctg
cacgggtgtatacacacaccttctgcacgggtgtatacacgcaccttctg
cacacaccttctctacccatcttctcctaccctatcaaccccctaatgtt
aggcaggagagaaaaacagattgaagggaatgacatatgttaggctattt
cctgctgaagagggcattgagctcctgggggcaagtttgatcacagtccg
gatatctacttctttttctcatctctcatgcatgactacctaacaactgc
aacaaaccacaaccaaagcacccacccaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_24274761_24275801
seq2: B6Ng01-031A05.g_69_1100

seq1  GAATTCCTTCAAACTTAAGAATCACACCTCAGATCTCTCTTATAAACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAAACTTAAGAATCACACCTCAGATCTCTCTTATAAACAAT  50

seq1  AGTCTGTATTGCACACATAGCAGTGGGTTAACCCCACAGAAATCCATTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTATTGCACACATAGCAGTGGGTTAACCCCACAGAAATCCATTGC  100

seq1  AAAGGGGGGAAGGTCATGTTTTGATCAGTTGACTCAGTAGCAAATATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGGGAAGGTCATGTTTTGATCAGTTGACTCAGTAGCAAATATAAA  150

seq1  CCTTGTTTTTCAAAGACCTCACTAATATTGTTGACTTGGTATTGCCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTTTCAAAGACCTCACTAATATTGTTGACTTGGTATTGCCTCTG  200

seq1  ACTGAGAACCTTTGTGATGGACCTCCAAGGCTTGGGATGATACCTGGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAACCTTTGTGATGGACCTCCAAGGCTTGGGATGATACCTGGAGC  250

seq1  TAGGGGCTTATGTGGGAAGGTGACTCTGCTCTAAACTCTGTTTTACCACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGCTTATGTGGGAAGGTGACTCTGCTCTAAACTCTGTTTTACCACG  300

seq1  TCACTGCAACTTTGCATTTTGTGTATTCTCTTGGACTACTGAGATCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCAACTTTGCATTTTGTGTATTCTCTTGGACTACTGAGATCTGAA  350

seq1  GGATCCATCCATCGTTTTTTTACTTGAATCAGCAGGGCTTATTCTTCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCATCCATCGTTTTTTTACTTGAATCAGCAGGGCTTATTCTTCATG  400

seq1  TGGTTAGAGCGTCACATCTTCAGATGGCTTTTAAAGGCCTTTCCAGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGAGCGTCACATCTTCAGATGGCTTTTAAAGGCCTTTCCAGTTCT  450

seq1  CAGGCCCCCTGACTTCAGAGGAGATCCAATGAATAAAAGGTAATAAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCCCTGACTTCAGAGGAGATCCAATGAATAAAAGGTAATAAGCAC  500

seq1  CTTCTGCACGGGTGTATACATGCACCTTCTGCACGGGTGTATACACGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCACGGGTGTATACATGCACCTTCTGCACGGGTGTATACACGCAC  550

seq1  CTTCTGCACGGGCGTATACACACACCTGCACAGGTGTATACACACACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCACGGGCGTATACACACACCTGCACAGGTGTATACACACACCTT  600

seq1  CTGAACGGGTGTATACATGCACCTTCTGCACGGGTGTATACACGCACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACGGGTGTATACATGCACCTTCTGCACGGGTGTATACACGCACCTT  650

seq1  CTGCACGGGCGTATACACACACCTGCACAGGTGTATACACACACCTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACGGGCGTATACACACACCTGCACAGGTGTATACACACACCTTCTG  700

seq1  CACAGGTGTATACATGCACCTTCTGCACAGGTGTATATACACACCTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGTATACATGCACCTTCTGCACAGGTGTATATACACACCTTCTG  750

seq1  CACGGGTGTATACACACACCTTCTGCACGGGTGTATACACGCACCTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGTGTATACACACACCTTCTGCACGGGTGTATACACGCACCTTCTG  800

seq1  CACACACCTTCTCTACCCATCTTCTCCTACCCTATCAACCCCCTAATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCTTCTCTACCCATCTTCTCCTACCCTATCAACCCCCTAATGTT  850

seq1  AGGCAGGAGAGAAAAAACAGATTGAAGGGAATGACAATATTGTTAGGCTA  900
      ||||||||||| ||||||||||||||||||||||| ||| ||||||||||
seq2  AGGCAGGAGAG-AAAAACAGATTGAAGGGAATGAC-ATA-TGTTAGGCTA  897

seq1  TTTCCTGCTGAAGAGGGGCATTGAGCTCCTTGGGGGCAAGTTTGATCACA  950
      |||||||||||||| |||||||||||||| ||||||||||||||||||||
seq2  TTTCCTGCTGAAGA-GGGCATTGAGCTCC-TGGGGGCAAGTTTGATCACA  945

seq1  GTCCGGATATCTAACTTCTTTTTCTCATCTCTTCATGCATGACTACCTAA  1000
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  GTCCGGATATCT-ACTTCTTTTTCTCATCTC-TCATGCATGACTACCTAA  993

seq1  CAAACTGCAACAAACCACAACCAAAAGCACCCACCCACCAA  1041
      | |||||||||||||||||||| ||||||||||||||||||
seq2  C-AACTGCAACAAACCACAACC-AAAGCACCCACCCACCAA  1032