BAC Information

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BAC

Clone NameB6Ng01-031C04
Chromosome6 (Build37)1 (Build37)
Map Location 18,835,442 - 18,835,96897,938,121 - 97,939,248
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031C04.bB6Ng01-031C04.g
ACCDH860835DH860836
length9191,094
definitionDH860835|Mus musculus domesticus DNA, BAC clone: B6Ng01-031C04, 5' end.DH860836|Mus musculus domesticus DNA, BAC clone: B6Ng01-031C04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(97,938,121 - 97,939,248)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgatagcaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaacaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
tttacaatgttgatcctgccaatccatgagcatgggagatctttccatct
tctgagatcttctttaatttctttcttcagagatttgaagttttatcata
tagatctttcacctcctta
gaattcagcatagtgacacactattggcttattcaaacatcagcagaaaa
attacatgtacgtgcagggtgtcagagttctgtgagttgttgactcagtt
cagatagccctgttatgtcctcacattcctctttatctttctggtcaaga
tgttcccaggaatgttttaactacagggcatacccgggtttgtttttact
ttgttctcagccccaggcaacctctaagctcacaaacaaccagcaatttc
tgagtactttatatgacttacaggtcttgaaatttcatctttctttcagc
agcaccaggaacttatctcacatgattaacaatttggtcacaattgcata
gggcaggaattaactaatagaaatataaatgatttctcataaaaaaattc
agggatgatgaaacctcccagccctgtgaggctgacaacttgaagccaat
ctctggtaagacagaatagatgctgaaatgttagcctccaacttccatat
ttggggttttcatatgaaggcttattacatccctttttctctccttccct
ccctcccttccctcatctctccttcctccatcccccatctctctcctctc
tctctctctctctctctctctctctcacacacacacacacacacacacac
acaaatgcacactaataacaatatttaagattaacacgagattaagtagg
caaacattgattactataattttagtcctacagtttctggtgagtatgcg
gtcatattattgttgtcaaactttactgtaaagcttactcatgttttttg
agagtgattactaaattgatctttagcgagtgagaccttaaaacaaaaac
aaaataagaaaggcagtaagtttgctattttgtcaaatttgtaattggaa
gtagttggctacccaatgtcagaataaaaatatgtgatatatgtatatca
aaggaaacatgaacacaatatgggtagaattattatataaaatatatgtt
caatgggttgtcattgtctggaattctgagctatgctagaaaaacctata
gatacggctagttaggtgaagctaacgttctctgaactagcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-031C04.b_45_572 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      ||||||||||| |||| |||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGCTATCGTGTAGAAGAATGCGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr1_97938121_97939248
seq2: B6Ng01-031C04.g_66_1159

seq1  GAATTCAGCATAGTGACACACTATTGGCTTATTCAAACATCAGCAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATAGTGACACACTATTGGCTTATTCAAACATCAGCAGAAAA  50

seq1  ATTACATGTACGTGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTACGTGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGTT  100

seq1  CAGATAGCCCTGTTATGTCCTCACATTCCTCTTTATCTTTCTGGTCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGCCCTGTTATGTCCTCACATTCCTCTTTATCTTTCTGGTCAAGA  150

seq1  TGTTCCCAGGAATGTTTTAACTACAGGGCATACCCGGGTTTGTTTTTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCAGGAATGTTTTAACTACAGGGCATACCCGGGTTTGTTTTTACT  200

seq1  TTGTTCTCAGCCCCAGGCAACCTCTAAGCTCACAAACAACCAGCAATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCAGCCCCAGGCAACCTCTAAGCTCACAAACAACCAGCAATTTC  250

seq1  TGAGTACTTTATATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACTTTATATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCAGC  300

seq1  AGCACCAGGAACTTATCTCACATGATTAACAATTTGGTCACAATTGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAGGAACTTATCTCACATGATTAACAATTTGGTCACAATTGCATA  350

seq1  GGGCAGGAATTAACTAATAGAAATATAAATGATTTCTCATAAAAAAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAATTAACTAATAGAAATATAAATGATTTCTCATAAAAAAATTC  400

seq1  AGGGATGATGAAACCTCCCAGCCCTGTGAGGCTGACAACTTGAAGCCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGATGAAACCTCCCAGCCCTGTGAGGCTGACAACTTGAAGCCAAT  450

seq1  CTCTGGTAAGACAGAATAGATGCTGAAATGTTAGCCTCCAACTTCCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTAAGACAGAATAGATGCTGAAATGTTAGCCTCCAACTTCCATAT  500

seq1  TTGGGGTTTTCATATGAAGGCTTATTACATCCCTTTTTCTCTCCTTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTTTTCATATGAAGGCTTATTACATCCCTTTTTCTCTCCTTCCCT  550

seq1  CCCTCCCTTCCCTCATCTCTCCTTCCTCCATCCCCCATCTCTCTCCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTTCCCTCATCTCTCCTTCCTCCATCCCCCATCTCTCTCCTCTC  600

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACAC  650

seq1  ACAAATGCACACTAATAACAATATTTAAGATTAACACGAGATTAAGTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCACACTAATAACAATATTTAAGATTAACACGAGATTAAGTAGG  700

seq1  CAAACATTGATTACTATAATTTTAGTCCTACAGTTTCTGGTGAGTATGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTGATTACTATAATTTTAGTCCTACAGTTTCTGGTGAGTATGCG  750

seq1  GTCATATTATTGTTGTCAAACTTTACTGTAAAGCTTACTCAGGTTTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTCATATTATTGTTGTCAAACTTTACTGTAAAGCTTACTCATGTTTTTTG  800

seq1  AGAGTGATTACTAAATTGATCTTTAGCGAGTGAGACCTTAAAAACAAAAA  850
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  AGAGTGATTACTAAATTGATCTTTAGCGAGTGAGACCTTAAAA--CAAAA  848

seq1  ACAAAATAAGAAAGGCAGTAAAGTTTGCTAATTTTGTCAAATTTGTAATT  900
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  ACAAAATAAGAAAGGCAGT-AAGTTTGCT-ATTTTGTCAAATTTGTAATT  896

seq1  GGAAGTTAGTTGGCTAACCCAATGTCAGAATAAAAAATATTGTGATATAT  950
      ||||| ||||||||| ||||||||||||||| ||||||| ||||||||||
seq2  GGAAG-TAGTTGGCT-ACCCAATGTCAGAAT-AAAAATA-TGTGATATAT  942

seq1  GTATAATCAAAGGAAACATGAACCACAATATGGGTCAGAATTATTTAATA  1000
      |||| ||||||||||||||||| |||||||||||| |||||||||  |||
seq2  GTAT-ATCAAAGGAAACATGAA-CACAATATGGGT-AGAATTATT--ATA  987

seq1  TAAAATATAATTGTATTCAAATGTGTTGTTCATTTGTTCTTGAAAATTTC  1050
      |||||||||    | ||| |||| |||| |||||   ||| |||   |||
seq2  TAAAATATA----TGTTC-AATGGGTTG-TCATT--GTCTGGAA---TTC  1026

seq1  TGAGCTATTGCTTAGAAAATACCTATAAGTAACGGCTAGTTAAGTTGAAG  1100
      ||||||| ||| ||||||| |||||| ||  |||||||||| || |||||
seq2  TGAGCTA-TGC-TAGAAAA-ACCTAT-AGATACGGCTAGTT-AGGTGAAG  1071

seq1  CATAAACGTTCCTCTTGAAACTAGCAGT  1128
      |   |||||| ||||   ||||||||||
seq2  C--TAACGTT-CTCT--GAACTAGCAGT  1094