BAC Information

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BAC

Clone NameB6Ng01-031N04
Chromosome1 (Build37)
Map Location 132,103,465 - 132,212,889
singlet/doubletdoublet
Overlap geneThsd7b
Upstream geneLOC100042732, LOC100042745, LOC100042740
Downstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031N04.bB6Ng01-031N04.g
ACCDH861332DH861333
length1,1141,082
definitionDH861332|Mus musculus domesticus DNA, BAC clone: B6Ng01-031N04, 5' end.DH861333|Mus musculus domesticus DNA, BAC clone: B6Ng01-031N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,103,465 - 132,104,816)(132,211,789 - 132,212,889)
sequence
gaattccttaatctctaatctgtgaacatcatgaccaagaagcaagttgg
gaaggaaagggtttatttggcttacacttccatactgctgttcatcacca
aggatgtcaggactggaactcaagcaggtcaggaagcacagctgatgcag
atgtgtgctgtgacagcatgtattcgtgtgttttcacgtggtggggcaca
tgcacatggatttgtgtgtacatgtgaacagagattcaaggttgtcatca
agtgtctccctccattgctcttcttaaatattgcggtagtagagttagtg
gctctcagctggacatagagattgcaaatcagctagtctatctagccagc
ttgttctggggtctcctgattctgattttcgcacactgggattacagtca
gaccaccatggctgcctggcttttatgtgagtgctatgtgtctgaacttc
attcctcacacttatgtggtaagtgctgcagccacagaatggtctcccca
aaacatgtttcaacctgatgagtttaatggcaagagagcataatctgaaa
ccgctcctcaggggacacggagaccgttataatacatttagctgccacac
atttcaatctgaactgtccctcttaagaatccatcctgcacatacataca
cataagactacaaatggttcctgttacaaatgatgactgcttattttaac
aaatgaagagatgcatctgagattcccataaatggaatgttgtgaaaaca
tgaacatggttgaactgtgtgatgtgttctcagggatactttggaaagag
ggaaacctgcgtctgtaaactaggactatcagcaatccacccacgctggg
taataaaaacagggagttagcaactgaacatactcgtcatacagttttat
ttctaaagctatatttattcatgtgcttgtgtgtgtattcatgtgtgcat
tcggatgcctacccatctacatcaaactgaaacgatcacagatattggat
ggggatagcttccacagagagaggggtagagaagacatttcaactgtatc
ctttatagtttgactttagttattatcacttacaacggcatgtatataat
tatataattccacc
gaattctgaccatttacttttgcttcatctttcactgaaggctagacaga
gccctaatctgattcttttctaagcctacagaaagcattaaagggaggca
caaatgcttgtcctgggattccttagtactgaagttaaatgtgggcacta
agaattatgggtggaaaccaactatatctgctataagctgttaactgaaa
ttgtcccagataaaataggacatgcgctctccatgctaaagggttcgctt
ttaggaattcatgtttgtccatctctaccagagctgagtgtgaatctaga
gttcaaagcaaacattttaggaggagaagtaaaccctcttccatttttag
aattctaccaagatctctttgtatctccctcagacaattccaagtctctc
tgacagctcactggatcgctctgctcctccattcaattacatttcctcca
tctgcacttgattgtgaaaactctctaattatcaagcacacatttaatta
agcacctttttagtcacttagcatgaagttgtgaaagttgcaagagtgaa
aatcagtcatatgagacgaatagcaaaaagcataatagatccacctgttc
aaaattggtggaattaaatgactgtctagagcattaaatattctgtggag
catcttctactttattgtttttgcaaaatggctttggagtcatcattaat
gctctcagtaattaatgaacaccagatggaagatggaaccgacaggccac
atccatcaggaagtgttttctcagagttaaatgaggccgaactcgggaag
ttttcacctccctctagtcttggtttattgaaggccaaagttccaatttt
atggactgggtgggggaccgaatgcataccttagcctcatcatatccata
caagacacattccttccttcatctgtttctgttgaaaagaaacatatcct
accccaaatatcatcagtaatattattttcccactagctagaaaattatt
ttgatagtctataaaataggcgagaaagaggacactgtctctatactcct
ttggatgaatactaaatgaatgcagctattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_132103465_132104816
seq2: B6Ng01-031N04.b_43_1156

seq1  GAATTCCTTAATCTCTAATCTGTGAACATCATGACCAAGAAGCAAGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAATCTCTAATCTGTGAACATCATGACCAAGAAGCAAGTTGG  50

seq1  GAAGGAAAGGGTTTATTTGGCTTACACTTCCATACTGCTGTTCATCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAGGGTTTATTTGGCTTACACTTCCATACTGCTGTTCATCACCA  100

seq1  AGGATGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCACAGCTGATGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCACAGCTGATGCAG  150

seq1  ATGTGTGCTGTGACAGCATGTATTCGTGTGTTTTCACGTGGTGGGGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCTGTGACAGCATGTATTCGTGTGTTTTCACGTGGTGGGGCACA  200

seq1  TGCACATGGATTTGTGTGTACATGTGAACAGAGATTCAAGGTTGTCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGGATTTGTGTGTACATGTGAACAGAGATTCAAGGTTGTCATCA  250

seq1  AGTGTCTCCCTCCATTGCTCTTCTTAAATATTGCGGTAGTAGAGTTAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTCCCTCCATTGCTCTTCTTAAATATTGCGGTAGTAGAGTTAGTG  300

seq1  GCTCTCAGCTGGACATAGAGATTGCAAATCAGCTAGTCTATCTAGCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAGCTGGACATAGAGATTGCAAATCAGCTAGTCTATCTAGCCAGC  350

seq1  TTGTTCTGGGGTCTCCTGATTCTGATTTTCGCACACTGGGATTACAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGGGGTCTCCTGATTCTGATTTTCGCACACTGGGATTACAGTCA  400

seq1  GACCACCATGGCTGCCTGGCTTTTATGTGAGTGCTATGTGTCTGAACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCATGGCTGCCTGGCTTTTATGTGAGTGCTATGTGTCTGAACTTC  450

seq1  ATTCCTCACACTTATGTGGTAAGTGCTGCAGCCACAGAATGGTCTCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCACACTTATGTGGTAAGTGCTGCAGCCACAGAATGGTCTCCCCA  500

seq1  AAACATGTTTCAACCTGATGAGTTTAATGGCAAGAGAGCATAATCTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTTTCAACCTGATGAGTTTAATGGCAAGAGAGCATAATCTGAAA  550

seq1  CCGCTCCTCAGGGGACACGGAGACCGTTATAATACATTTAGCTGCCACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCCTCAGGGGACACGGAGACCGTTATAATACATTTAGCTGCCACAC  600

seq1  ATTTCAATCTGAACTGTCCCTCTTAAGAATCCATCCTGCACATACATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATCTGAACTGTCCCTCTTAAGAATCCATCCTGCACATACATACA  650

seq1  CATAAGACTACAAATGGTTCCTGTTACAAATGATGACTGCTTATTTTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGACTACAAATGGTTCCTGTTACAAATGATGACTGCTTATTTTAAC  700

seq1  AAATGAAGAGATGCATCTGAGATTCCCATAAATGGAATGTTGTGAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGAGATGCATCTGAGATTCCCATAAATGGAATGTTGTGAAAACA  750

seq1  TGAACATGGTTGAACTGTGTGATGTGTTCTCAGGGATACTTTGGAAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATGGTTGAACTGTGTGATGTGTTCTCAGGGATACTTTGGAAAGAG  800

seq1  GGAAACCTGCGTCTGTAAACTAGGACTATCAGCAATCCACCCACGCTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCTGCGTCTGTAAACTAGGACTATCAGCAATCCACCCACGCTGGG  850

seq1  TAATAAAAAACAGGGAGTTAGCAACTGAACAATACTCGTCATACAGTTTT  900
      |||| ||||||||||||||||||||||||| ||||||||||||||| |||
seq2  TAAT-AAAAACAGGGAGTTAGCAACTGAAC-ATACTCGTCATACAG-TTT  897

seq1  TATTTCTAAAGCTATATTTATTCATGTGCTTGTGTGTGTATTCATGTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAAAGCTATATTTATTCATGTGCTTGTGTGTGTATTCATGTGTG  947

seq1  CATTCGGATGCCTACCCATCTACATCAAAACTGAAACGATCCACAGATAT  1000
      |||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  CATTCGGATGCCTACCCATCTACATC-AAACTGAAACGAT-CACAGATAT  995

seq1  TGGAATGGGGATAGCTTCCACA-AGAGAAGGAAGGGGTTAGAGAAAGACA  1049
      ||| |||||||||||||||||| |||||      ||| ||||| ||||||
seq2  TGG-ATGGGGATAGCTTCCACAGAGAGA------GGGGTAGAG-AAGACA  1037

seq1  TTTTCAAACTGTATCCCTTTAAATAGTTTGAACTTTTAGTCTAATTAT-A  1098
      |||   |||||||||| ||   |||||||||   |||||  | ||||| |
seq2  TTT--CAACTGTATCCTTT---ATAGTTTGA--CTTTAG--TTATTATCA  1078

seq1  CTACTACAAACGTGCATGTATATATTAAATTAATTAT-TAAATTCACCCT  1147
      ||  ||| |||| |||||||||        ||||||| ||| | ||||  
seq2  CT--TAC-AACG-GCATGTATA--------TAATTATATAATTCCACC--  1114

seq1  AAAATAACCTTGTATCCCACCACGTTCATCTACAGTGAAATAAGCCATCT  1197
                                                        
seq2  --------------------------------------------------  1114

seq1  CGGGGTCTGAGTCCTGAAGTTCTATGTCAGGAACATTCTTGCTCAGATTG  1247
                                                        
seq2  --------------------------------------------------  1114

seq1  TCAATGAAAAAGCTCAGAATGGAGAACTTTATCACCAGTGTTTCAGAACA  1297
                                                        
seq2  --------------------------------------------------  1114

seq1  ATCATTCTCAGCCTTTTAAAAGATGTTTATGACCTCAGAAATATATAATT  1347
                                                        
seq2  --------------------------------------------------  1114

seq1  CCACC  1352
           
seq2  -----  1114

seq1: chr1_132211789_132212889
seq2: B6Ng01-031N04.g_66_1147 (reverse)

seq1  GGAATAGCTGGCATTCATTTTAGTAATTCATCCACAGGGAGTAATAGAGA  50
      ||||||||| ||||||| |||||| ||||||||| | ||||| |||||||
seq2  GGAATAGCT-GCATTCA-TTTAGT-ATTCATCCA-AAGGAGT-ATAGAGA  45

seq1  CAGTTGTCTTCTTTTCTCGCCTATTTTATAGACTATCAAAATTAATTTTT  100
      ||| |||| || ||||||||||||||||||||||||||||||  | ||||
seq2  CAG-TGTCCTC-TTTCTCGCCTATTTTATAGACTATCAAAAT--AATTTT  91

seq1  CTAGCTAGTTGGGAAAATTAATATTACCTGATGATATTTGGGGGTAAGGA  150
      |||||||| |||||||| |||||||| ||||||||||||||||   ||||
seq2  CTAGCTAG-TGGGAAAA-TAATATTA-CTGATGATATTTGGGG--TAGGA  136

seq1  TATGTTTCTTTTCAACAGAAACAGATGGAAGGAAGGAATTGTGTCTTGTA  200
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  TATGTTTCTTTTCAACAGAAACAGAT-GAAGGAAGGAA-TGTGTCTTGTA  184

seq1  TTGGATATTGATGAGGCTAAGGTATGCATTCGGTCCCCCACCCAGTCCAT  250
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  -TGGATA-TGATGAGGCTAAGGTATGCATTCGGTCCCCCACCCAGTCCAT  232

seq1  AAAATTGGAACTTTGGGCCTTCAATAAACCAAGACTAGAGGGAGGTGAAA  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAATTGGAACTTT-GGCCTTCAATAAACCAAGACTAGAGGGAGGTGAAA  281

seq1  ACTTCCCGAGTTCGGCCTCATTTAACTCTGAGAAAACACTTCCTGATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCGAGTTCGGCCTCATTTAACTCTGAGAAAACACTTCCTGATGGA  331

seq1  TGTGGCCTGTCGGTTCCATCTTCCATCTGGTGTTCATTAATTACTGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTGTCGGTTCCATCTTCCATCTGGTGTTCATTAATTACTGAGAG  381

seq1  CATTAATGATGACTCCAAAGCCATTTTGCAAAAACAATAAAGTAGAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATGATGACTCCAAAGCCATTTTGCAAAAACAATAAAGTAGAAGAT  431

seq1  GCTCCACAGAATATTTAATGCTCTAGACAGTCATTTAATTCCACCAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACAGAATATTTAATGCTCTAGACAGTCATTTAATTCCACCAATTT  481

seq1  TGAACAGGTGGATCTATTATGCTTTTTGCTATTCGTCTCATATGACTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGGTGGATCTATTATGCTTTTTGCTATTCGTCTCATATGACTGAT  531

seq1  TTTCACTCTTGCAACTTTCACAACTTCATGCTAAGTGACTAAAAAGGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTCTTGCAACTTTCACAACTTCATGCTAAGTGACTAAAAAGGTGC  581

seq1  TTAATTAAATGTGTGCTTGATAATTAGAGAGTTTTCACAATCAAGTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAAATGTGTGCTTGATAATTAGAGAGTTTTCACAATCAAGTGCAG  631

seq1  ATGGAGGAAATGTAATTGAATGGAGGAGCAGAGCGATCCAGTGAGCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAAATGTAATTGAATGGAGGAGCAGAGCGATCCAGTGAGCTGTC  681

seq1  AGAGAGACTTGGAATTGTCTGAGGGAGATACAAAGAGATCTTGGTAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACTTGGAATTGTCTGAGGGAGATACAAAGAGATCTTGGTAGAAT  731

seq1  TCTAAAAATGGAAGAGGGTTTACTTCTCCTCCTAAAATGTTTGCTTTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAATGGAAGAGGGTTTACTTCTCCTCCTAAAATGTTTGCTTTGAA  781

seq1  CTCTAGATTCACACTCAGCTCTGGTAGAGATGGACAAACATGAATTCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGATTCACACTCAGCTCTGGTAGAGATGGACAAACATGAATTCCTA  831

seq1  AAAGCGAACCCTTTAGCATGGAGAGCGCATGTCCTATTTTATCTGGGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGAACCCTTTAGCATGGAGAGCGCATGTCCTATTTTATCTGGGACA  881

seq1  ATTTCAGTTAACAGCTTATAGCAGATATAGTTGGTTTCCACCCATAATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTTAACAGCTTATAGCAGATATAGTTGGTTTCCACCCATAATTC  931

seq1  TTAGTGCCCACATTTAACTTCAGTACTAAGGAATCCCAGGACAAGCATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCCCACATTTAACTTCAGTACTAAGGAATCCCAGGACAAGCATTT  981

seq1  GTGCCTCCCTTTAATGCTTTCTGTAGGCTTAGAAAAGAATCAGATTAGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCCCTTTAATGCTTTCTGTAGGCTTAGAAAAGAATCAGATTAGGG  1031

seq1  CTCTGTCTAGCCTTCAGTGAAAGATGAAGCAAAAGTAAATGGTCAGAATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTAGCCTTCAGTGAAAGATGAAGCAAAAGTAAATGGTCAGAATT  1081

seq1  C  1101
      |
seq2  C  1082