BAC Information

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BAC

Clone NameB6Ng01-031N10
Chromosome1 (Build37)
Map Location 88,766,926 - 88,908,740
singlet/doubletdoublet
Overlap gene4930429A22Rik, EG620213
Upstream geneItm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc
Downstream geneLOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031N10.bB6Ng01-031N10.g
ACCDH861342DH861343
length1,0971,062
definitionDH861342|Mus musculus domesticus DNA, BAC clone: B6Ng01-031N10, 5' end.DH861343|Mus musculus domesticus DNA, BAC clone: B6Ng01-031N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,766,926 - 88,767,874)(88,907,674 - 88,908,740)
sequence
gaattcaacacaccactttcatcaatggacagatcctggaaacagaaact
aaacagggacacagtgaaactaacagaagttatgaaacaaatgtacttaa
cagatatctacagaacattttatcctaaaacaaaaggatataccttcttc
tcagcacctcatggtaccttctccaaaattgaccatataattggtcacaa
aacaggcctcaacagatacaaaaatattgaaattgtcccatgcatcctat
cagatcaccatggactaaggctgatcttcaataacaacataaataataga
aagccaacattcacgtggaaactgaaaaacactcttctcaatgatacctt
ggtcaaggaaggaataaagaaagaaattaaagactttttagagtttaatg
aaaatgaagccacaacatacccaaacttatgggacacaatgaaagcattt
ctaagaggaaaactcatagctctgagtgcctccaaaaagaaactagagag
agcacacactaactctgaaaccgaataactctcctagaatatgtttctct
ggcatttttctgtgttagttcttcctgagatgtgagctagcctgtcagaa
aaatctcaatttcttcttatttctggagcattgtcttagtaatatatttg
aaaatggtttctagtcctatctagaacctacctccagctatggcatggtt
agatccctttgatctgatctgatctgatctgatctgatctgatctgatct
gatctgatctgtgtattagttacttgcctcatttttgtgacaaaacagct
aaacaaaagaaaaacctgtgaaagcagctcacagtttaagggtgccgtcc
gtcagagtgagcaagaggtgacagataacactatattcacatcaggaagc
aagagtcatggatgcttgcgttcatctccttttccctttactcagtgaat
taaaaccatactaagtgtattaattatgctttcttcctcggcctgtccat
ggtgctgccaacaggagttaacatatctaattatcctcccagacagctca
gcaatgctttccccgctattatagtctccagaggacagcaagttacc
gaattccctgtcttgtccacaacagatgcaaactgacctctcataggcac
tagtgcctctgcgtgggcctggaaggggctagcaagtgagagggatggtc
tgagcaggcgatcttgaagcccaacccaggcttccctcccagggatgtaa
agacagagccagtggtgaaaggagcatagttttctggctaggactgctct
agttccgcccactttcttctcctggaggctgggcttgtttcagtttgcta
gcagttaggactcaggttcaagctcaggtcaaggagcagtctggcaagcc
tctcagcttcccatggttaaagctccctcagttcctgggtcttgcagggt
atctgactgctccttatgtggaaggcagccaatcctacacagggccaaca
ttttggggaatgccacttaacagcatacttgaaaaaaaaaaaaactgaaa
aggtcctcccacctgaagcttaggtttgaaaattgaaaaatcttattagg
agggaatcttcacattctttgaagtgatctttagttttccttcgttagtc
ttcattgtttggtttggatttcctaagcattatttctttttttccatctc
ctctttgctttcttttataagacaaagatgctgtgggctttgctttaact
tggttaacaacgattctatggcaatgtattaaatttctttctcctaagtc
cactgaagtctttttggacttgaagagctttttaagaaagaacttgctca
ttcagcaggattttcctccctgctccaagctctggttctgacctgggaaa
aaatagagtaagaaagagcaagagaatcctgcagtcctgacgctcaactt
cacaaaccacaaaaaaaggaccttgcctccagtaacgtaatcatgaagag
ttcctggcaaccttggtctttcaagaaaaaatacatccatctgctggcac
agggaccctctactaaatctgtcagcatggagttcccgattcgtaggttg
gagctacagcgaggctggcgctcccactggatgacgcctcctgcagtgca
gtcctgaaaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88766926_88767874
seq2: B6Ng01-031N10.b_214_1142

seq1  TTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATA  50

seq1  CAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGACTAA  100

seq1  GGCTGATCTTCAATAACAACATAAATAATAGAAAGCCAACATTCACGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATCTTCAATAACAACATAAATAATAGAAAGCCAACATTCACGTGG  150

seq1  AAACTGAAAAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAAAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAA  200

seq1  GAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACAT  250

seq1  ACCCAAACTTATGGGACACAATGAAAGCATTTCTAAGAGGAAAACTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAACTTATGGGACACAATGAAAGCATTTCTAAGAGGAAAACTCATA  300

seq1  GCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTAACTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTAACTCTGA  350

seq1  AACCGAATAACTCTCCTAGAATATGTTTCTCTGGCATTTTTCTGTGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAATAACTCTCCTAGAATATGTTTCTCTGGCATTTTTCTGTGTTAG  400

seq1  TTCTTCCTGAGATGTGAGCTAGCCTGTCAGAAAAATCTCAATTTCTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTGAGATGTGAGCTAGCCTGTCAGAAAAATCTCAATTTCTTCTT  450

seq1  ATTTCTGGAGCATTGTCTTAGTAATATATTTGAAAATGGTTTCTAGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGAGCATTGTCTTAGTAATATATTTGAAAATGGTTTCTAGTCCT  500

seq1  ATCTAGAACCTACCTCCAGCTATGGCATGGTTAGATCCCTTTGATCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAACCTACCTCCAGCTATGGCATGGTTAGATCCCTTTGATCTGAT  550

seq1  CTGATCTGATCTGATCTGATCTGATCTGATCTGATCTGATCTGTGTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTGATCTGATCTGATCTGATCTGATCTGATCTGATCTGTGTATTA  600

seq1  GTTACTTGCCTCATTTTTGTGACAAAACAGCTAAACAAAAGAAAAACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTGCCTCATTTTTGTGACAAAACAGCTAAACAAAAGAAAAACCTG  650

seq1  TGAAAAGCAGGCTCACAGTTTAAGGGTGCCGTCCGTCAGAGTGAGCAAGA  700
      || |||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TG-AAAGCA-GCTCACAGTTTAAGGGTGCCGTCCGTCAGAGTGAGCAAGA  698

seq1  GGTGACAGATAACACTATATCCACAATCAGGAAGCAAAGAGTCATGGATG  750
      |||||||||||||||||||| ||| |||||||||| ||||||||||||||
seq2  GGTGACAGATAACACTATATTCAC-ATCAGGAAGC-AAGAGTCATGGATG  746

seq1  CTTGCGTTCATCTCCTTTTCCCCTTTTACTCAGTGAATTAAAACCATACT  800
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  CTTGCGTTCATCTCCTTTTCCC--TTTACTCAGTGAATTAAAACCATACT  794

seq1  AAGTGTTATTAATTATGCTTTCTTCCTCGGCCTGTCCAATGGTGCTGCCA  850
      ||||| ||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGTG-TATTAATTATGCTTTCTTCCTCGGCCTGTCC-ATGGTGCTGCCA  842

seq1  ACAGGAGTTAACCATATCTAAATAATCCCTCCCAGACAGGCTCAGCAATG  900
      ||||||||||| ||||||||| ||   ||||||||||| |||||||||||
seq2  ACAGGAGTTAA-CATATCTAATTA--TCCTCCCAGACA-GCTCAGCAATG  888

seq1  CCTTTCCACGGCTATTATAAGTTCCTCCAAGAGGACAGCCAAGGTTACC  949
       |||||| | |||||||| |||  |||| ||||||||||  | ||||||
seq2  -CTTTCC-CCGCTATTAT-AGT--CTCC-AGAGGACAGC--AAGTTACC  929

seq1: chr1_88907674_88908740
seq2: B6Ng01-031N10.g_65_1126 (reverse)

seq1  GGGTTTCCAGACTCGCACTGCAGGGAGGCGTCATCCAGTGGGAGCGGCCA  50
      |||||||  |||| |||||||| |||||||||||||||||||||| ||||
seq2  GGGTTTCAGGACT-GCACTGCA-GGAGGCGTCATCCAGTGGGAGC-GCCA  47

seq1  GCCTCGCTGTAGACTTCCAACACTAACGAATCGGGAACTCCATGCTGAAC  100
      ||||||||||||   |||||| || |||||||||||||||||||||| ||
seq2  GCCTCGCTGTAG--CTCCAAC-CT-ACGAATCGGGAACTCCATGCTG-AC  92

seq1  AGGATTTAGTTAGAGGGTCCCTGTGCCAGCAGATGGATGTA-TTTTTCTT  149
      | ||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  A-GATTTAG-TAGAGGGTCCCTGTGCCAGCAGATGGATGTATTTTTTCTT  140

seq1  GAAAGACCAAGG-TGCCA-GAACTCTTCATGATTACGTTACTGGA-GCAA  196
      |||||||||||| ||||| |||||||||||||||||||||||||| ||||
seq2  GAAAGACCAAGGTTGCCAGGAACTCTTCATGATTACGTTACTGGAGGCAA  190

seq1  GGTCC-TTTTTTGTGGTTTGTGAAGTTGAGCGTCAGGACTGCAGGATTCT  245
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTTTTTTGTGGTTTGTGAAGTTGAGCGTCAGGACTGCAGGATTCT  240

seq1  CTTGCTCTTTCTTACTCTTATTTTTTCCAGGTCAGAACCAGAGCTTGGAG  295
      ||||||||||||||||||  ||||| ||||||||||||||||||||||||
seq2  CTTGCTCTTTCTTACTCTATTTTTTCCCAGGTCAGAACCAGAGCTTGGAG  290

seq1  CAGGGAGGAAAATCCTGCTGAATGAGCAAGTTCTTTCTTAAAAAGCTCTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGGAAAATCCTGCTGAATGAGCAAGTTCTTTCTTAAAAAGCTCTT  340

seq1  CAAGTCCAAAAAGACTTCAGTGGACTTAGGAGAAAGAAATTTAATACATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCAAAAAGACTTCAGTGGACTTAGGAGAAAGAAATTTAATACATT  390

seq1  GCCATAGAATCGTTGTTAACCAAGTTAAAGCAAAGCCCACAGCATCTTTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGAATCGTTGTTAACCAAGTTAAAGCAAAGCCCACAGCATCTTTG  440

seq1  TCTTATAAAAGAAAGCAAAGAGGAGATGGAAAAAAAGAAATAATGCTTAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAAAAGAAAGCAAAGAGGAGATGGAAAAAAAGAAATAATGCTTAG  490

seq1  GAAATCCAAACCAAACAATGAAGACTAACGAAGGAAAACTAAAGATCACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCAAACCAAACAATGAAGACTAACGAAGGAAAACTAAAGATCACT  540

seq1  TCAAAGAATGTGAAGATTCCCTCCTAATAAGATTTTTCAATTTTCAAACC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAATGTGAAGATTCCCTCCTAATAAGATTTTTCAATTTTCAAACC  590

seq1  TAAGCTTCAGGTGGGAGGACCTTTTCAGTTTTTTTTTTTTTCAAGTATGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTCAGGTGGGAGGACCTTTTCAGTTTTTTTTTTTTTCAAGTATGC  640

seq1  TGTTAAGTGGCATTCCCCAAAATGTTGGCCCTGTGTAGGATTGGCTGCCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGTGGCATTCCCCAAAATGTTGGCCCTGTGTAGGATTGGCTGCCT  690

seq1  TCCACATAAGGAGCAGTCAGATACCCTGCAAGACCCAGGAACTGAGGGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATAAGGAGCAGTCAGATACCCTGCAAGACCCAGGAACTGAGGGAG  740

seq1  CTTTAACCATGGGAAGCTGAGAGGCTTGCCAGACTGCTCCTTGACCTGAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACCATGGGAAGCTGAGAGGCTTGCCAGACTGCTCCTTGACCTGAG  790

seq1  CTTGAACCTGAGTCCTAACTGCTAGCAAACTGAAACAAGCCCAGCCTCCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACCTGAGTCCTAACTGCTAGCAAACTGAAACAAGCCCAGCCTCCA  840

seq1  GGAGAAGAAAGTGGGCGGAACTAGAGCAGTCCTAGCCAGAAAACTATGCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAAAGTGGGCGGAACTAGAGCAGTCCTAGCCAGAAAACTATGCT  890

seq1  CCTTTCACCACTGGCTCTGTCTTTACATCCCTGGGAGGGAAGCCTGGGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACCACTGGCTCTGTCTTTACATCCCTGGGAGGGAAGCCTGGGTT  940

seq1  GGGCTTCAAGATCGCCTGCTCAGACCATCCCTCTCACTTGCTAGCCCCTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCAAGATCGCCTGCTCAGACCATCCCTCTCACTTGCTAGCCCCTT  990

seq1  CCAGGCCCACGCAGAGGCACTAGTGCCTATGAGAGGTCAGTTTGCATCTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCCACGCAGAGGCACTAGTGCCTATGAGAGGTCAGTTTGCATCTG  1040

seq1  TTGTGGACAAGACAGGGAATTC  1067
      ||||||||||||||||||||||
seq2  TTGTGGACAAGACAGGGAATTC  1062