BAC Information

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BAC

Clone NameB6Ng01-032A17
Chromosome1 (Build37)
Map Location 78,863,135 - 78,977,350
singlet/doubletdoublet
Overlap geneEG545332
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260
Downstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032A17.bB6Ng01-032A17.g
ACCDH861491DH861492
length7611,017
definitionDH861491|Mus musculus domesticus DNA, BAC clone: B6Ng01-032A17, 5' end.DH861492|Mus musculus domesticus DNA, BAC clone: B6Ng01-032A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,863,135 - 78,863,895)(78,976,317 - 78,977,350)
sequence
gaattcactgactgctgtactgagagtgaaaaccagaatggtttggacag
ctacagaagacacagatgggtgttcagtcaacaccgggcatgaaaaccat
aagacataactgtgtaacacacattgtttaccttggggagactggttgcc
tgtgagctgaggcttgttactatgactctagaattgctattgcatattgc
aagcccaagacaggatcagcattccagagtctagttgctactgaagtcat
atctctttttgttccagcatgaagtggaaaactatctgctaaatcatgac
atatcagggttggtctatgtttagaattatctctagaactaaaagtcaag
ttactgtcagccgtttcgctatttgggaattacacctacagcagaccagg
gggagtagaatccaggcagcgaggactccttcctagtgaaaggagagaca
gagaaaccaaaggattccaaaactgtaacagtctaagtcatgtgatgtca
ggaagggctggagtctcaggaatgttgttgagaagccctgaatcaccagg
cttctcaacatgccttcctacctgtttgctgtttggaaaggcagagaagt
gtgtagcactttaggaaaggtttcttatgttttaattagaagaacaagaa
aggttggttttcagcaagcgtagctttcagtaactaggagagcttgtgac
caacaacagtttcctgaagtaatttagaaataattttatattgcattaaa
agtaatgattt
gaattctgcttccagaattgagtctttatcttctctttgtcaaagtagga
tgtgtcacacacatccagtatttcatccaaatgggaatgtttgcagggaa
gagccttccattacacagctgacactggctttgaaggggctaattatgtt
taaagccagtctgaggcagaggaggccttggaccatgaaatatcttttca
ttaaaaaaaaaaaagaagaagatgtatcttgtaaaagcaaagaagctgaa
aaaaatctgtgtctctcattagaaatgtgtttcatgatgcagagatctaa
aattcctgatcataattattctgatgggccttaagagtcataatctgctc
ttccatccctgtgaagcaaaaacttaaaaatataatagataagtataggt
aataaattttgtaaactgcttaaaaacatatcctaagcacacccatgttc
atgaatggcagtctaacagattcatatcgttcccagggcagggcacaggc
ttgtgagcgctctggcgttggcatgacaacctaaggcaggatgagcaaca
ctcataggcagtgcactcagcgcttagatcttggaataatggctttcttc
cattctggatatgtgagtttaatgaaaaaaaattcactcatccaacactt
tacacagacaagaaagcaggtacaagatatgcagctccatccaactctaa
catgccagggccacatcaactctattgtggtgaggatgtgggtttcatac
aagaagatcctgtactggtttttgtttgtttgtttgtttgtttttgtttg
ttcgtttgtttttaagtaatgctcagcaagcagatgaaaggatttctctg
agagatgatgcccgcaagattagattagacccacaaaaagagatggcttc
cccaagcagtgggctgcaccactgaagacataaattgacaaagaatatag
gatgtggacttattgttttgccgagctggaatggtgcttctcctggtttg
cacatagagtctggttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_78863135_78863895
seq2: B6Ng01-032A17.b_42_802

seq1  GAATTCACTGACTGCTGTACTGAGAGTGAAAACCAGAATGGTTTGGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGACTGCTGTACTGAGAGTGAAAACCAGAATGGTTTGGACAG  50

seq1  CTACAGAAGACACAGATGGGTGTTCAGTCAACACCGGGCATGAAAACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAAGACACAGATGGGTGTTCAGTCAACACCGGGCATGAAAACCAT  100

seq1  AAGACATAACTGTGTAACACACATTGTTTACCTTGGGGAGACTGGTTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATAACTGTGTAACACACATTGTTTACCTTGGGGAGACTGGTTGCC  150

seq1  TGTGAGCTGAGGCTTGTTACTATGACTCTAGAATTGCTATTGCATATTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTGAGGCTTGTTACTATGACTCTAGAATTGCTATTGCATATTGC  200

seq1  AAGCCCAAGACAGGATCAGCATTCCAGAGTCTAGTTGCTACTGAAGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAAGACAGGATCAGCATTCCAGAGTCTAGTTGCTACTGAAGTCAT  250

seq1  ATCTCTTTTTGTTCCAGCATGAAGTGGAAAACTATCTGCTAAATCATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTTTGTTCCAGCATGAAGTGGAAAACTATCTGCTAAATCATGAC  300

seq1  ATATCAGGGTTGGTCTATGTTTAGAATTATCTCTAGAACTAAAAGTCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGGGTTGGTCTATGTTTAGAATTATCTCTAGAACTAAAAGTCAAG  350

seq1  TTACTGTCAGCCGTTTCGCTATTTGGGAATTACACCTACAGCAGACCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCAGCCGTTTCGCTATTTGGGAATTACACCTACAGCAGACCAGG  400

seq1  GGGAGTAGAATCCAGGCAGCGAGGACTCCTTCCTAGTGAAAGGAGAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTAGAATCCAGGCAGCGAGGACTCCTTCCTAGTGAAAGGAGAGACA  450

seq1  GAGAAACCAAAGGATTCCAAAACTGTAACAGTCTAAGTCATGTGATGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCAAAGGATTCCAAAACTGTAACAGTCTAAGTCATGTGATGTCA  500

seq1  GGAAGGGCTGGAGTCTCAGGAATGTTGTTGAGAAGCCCTGAATCACCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCTGGAGTCTCAGGAATGTTGTTGAGAAGCCCTGAATCACCAGG  550

seq1  CTTCTCAACATGCCTTCCTACCTGTTTGCTGTTTGGAAAGGCAGAGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAACATGCCTTCCTACCTGTTTGCTGTTTGGAAAGGCAGAGAAGT  600

seq1  GTGTAGCACTTTAGGAAAGGTTTCTTATGTTTTAATTAGAAGAACAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCACTTTAGGAAAGGTTTCTTATGTTTTAATTAGAAGAACAAGAA  650

seq1  AGGTTGGTTTTCAGCAAGCGTAGCTTTCAGTAACTAGGAGAGCTTGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGTTTTCAGCAAGCGTAGCTTTCAGTAACTAGGAGAGCTTGTGAC  700

seq1  CAACAACAGTTTCCTGAAGTAATTTAGAAATAATTTTATATTGCATTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAGTTTCCTGAAGTAATTTAGAAATAATTTTATATTGCATTAAA  750

seq1  AGTAATGATTT  761
      |||||||||||
seq2  AGTAATGATTT  761

seq1: chr1_78976317_78977350
seq2: B6Ng01-032A17.g_65_1081 (reverse)

seq1  GAACCAGAACACTAACGTGCAAACCAGGAGAAAGCACAGTCCCAGCTCCG  50
      ||||||| || || | |||||||||||||| ||||||  | |||||| ||
seq2  GAACCAG-ACTCT-ATGTGCAAACCAGGAG-AAGCACCATTCCAGCT-CG  46

seq1  GCAGAAACAATAAGTCCACCCTCCTATTATTCCTTTGTCCATTTATGTCT  100
      ||| |||||||||||||| | ||||| |||| ||||||| ||||||||||
seq2  GCA-AAACAATAAGTCCA-CATCCTA-TATT-CTTTGTCAATTTATGTCT  92

seq1  TCAGTGGTTGCAGCCCACCTGCCTTGGGGGAAGCCATCTCCTTTTTTGTG  150
      ||||||| ||||||||| ||||  | ||||||||||||||  ||||||||
seq2  TCAGTGG-TGCAGCCCA-CTGC--TTGGGGAAGCCATCTC--TTTTTGTG  136

seq1  GGTCTAAATGCTAATTCTTGCTGGCATCATCTCTCAGAGAAATCCTTTCA  200
      |||||||   |||| |||||| ||||||||||||||||||||||||||||
seq2  GGTCTAA--TCTAA-TCTTGCGGGCATCATCTCTCAGAGAAATCCTTTCA  183

seq1  TCTGCTTGCTGAGCATTACTTAAAAACAAACGAACAAACAAAAACAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGCTGAGCATTACTTAAAAACAAACGAACAAACAAAAACAAACA  233

seq1  AACAAACAAACAAAAACCAGTACAGGATCTTCTTGTATGAAACCCACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAAAACCAGTACAGGATCTTCTTGTATGAAACCCACATC  283

seq1  CTCACCACAATAGAGTTGATGTGGCCCTGGCATGTTAGAGTTGGATGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCACAATAGAGTTGATGTGGCCCTGGCATGTTAGAGTTGGATGGAG  333

seq1  CTGCATATCTTGTACCTGCTTTCTTGTCTGTGTAAAGTGTTGGATGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATATCTTGTACCTGCTTTCTTGTCTGTGTAAAGTGTTGGATGAGTG  383

seq1  AATTTTTTTTCATTAAACTCACATATCCAGAATGGAAGAAAGCCATTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTTCATTAAACTCACATATCCAGAATGGAAGAAAGCCATTATT  433

seq1  CCAAGATCTAAGCGCTGAGTGCACTGCCTATGAGTGTTGCTCATCCTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATCTAAGCGCTGAGTGCACTGCCTATGAGTGTTGCTCATCCTGCC  483

seq1  TTAGGTTGTCATGCCAACGCCAGAGCGCTCACAAGCCTGTGCCCTGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTGTCATGCCAACGCCAGAGCGCTCACAAGCCTGTGCCCTGCCCT  533

seq1  GGGAACGATATGAATCTGTTAGACTGCCATTCATGAACATGGGTGTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACGATATGAATCTGTTAGACTGCCATTCATGAACATGGGTGTGCTT  583

seq1  AGGATATGTTTTTAAGCAGTTTACAAAATTTATTACCTATACTTATCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGTTTTTAAGCAGTTTACAAAATTTATTACCTATACTTATCTAT  633

seq1  TATATTTTTAAGTTTTTGCTTCACAGGGATGGAAGAGCAGATTATGACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTAAGTTTTTGCTTCACAGGGATGGAAGAGCAGATTATGACTC  683

seq1  TTAAGGCCCATCAGAATAATTATGATCAGGAATTTTAGATCTCTGCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCCCATCAGAATAATTATGATCAGGAATTTTAGATCTCTGCATCA  733

seq1  TGAAACACATTTCTAATGAGAGACACAGATTTTTTTCAGCTTCTTTGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACACATTTCTAATGAGAGACACAGATTTTTTTCAGCTTCTTTGCTT  783

seq1  TTACAAGATACATCTTCTTCTTTTTTTTTTTTAATGAAAAGATATTTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGATACATCTTCTTCTTTTTTTTTTTTAATGAAAAGATATTTCAT  833

seq1  GGTCCAAGGCCTCCTCTGCCTCAGACTGGCTTTAAACATAATTAGCCCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAGGCCTCCTCTGCCTCAGACTGGCTTTAAACATAATTAGCCCCT  883

seq1  TCAAAGCCAGTGTCAGCTGTGTAATGGAAGGCTCTTCCCTGCAAACATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCCAGTGTCAGCTGTGTAATGGAAGGCTCTTCCCTGCAAACATTC  933

seq1  CCATTTGGATGAAATACTGGATGTGTGTGACACATCCTACTTTGACAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGGATGAAATACTGGATGTGTGTGACACATCCTACTTTGACAAAG  983

seq1  AGAAGATAAAGACTCAATTCTGGAAGCAGAATTC  1034
      ||||||||||||||||||||||||||||||||||
seq2  AGAAGATAAAGACTCAATTCTGGAAGCAGAATTC  1017